Wall clock time and date at job start Tue Mar 31 2020 05:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33340 * 122.70255 * 2 1 4 4 S 1.76159 * 108.10389 * 179.74597 * 3 2 1 5 5 C 1.70966 * 90.35803 * 0.30126 * 4 3 2 6 6 S 1.76200 * 124.95284 * 179.97438 * 5 4 3 7 7 C 1.80996 * 100.00212 * 359.70147 * 6 5 4 8 8 C 1.50695 * 109.47478 * 179.97438 * 7 6 5 9 9 O 1.21292 * 119.99947 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00262 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99865 * 4.73543 * 10 8 7 12 12 C 1.50703 * 109.47394 * 269.99821 * 11 10 8 13 13 H 1.08002 * 119.99483 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00162 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99843 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99792 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47124 * 60.00297 * 16 14 12 18 18 H 1.48503 * 109.46822 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47085 * 299.99976 * 16 14 12 20 20 C 1.39932 * 120.00052 * 184.73665 * 10 8 7 21 21 C 1.38867 * 120.06969 * 67.89610 * 20 10 8 22 22 C 1.38113 * 119.93011 * 179.97438 * 21 20 10 23 23 C 1.38283 * 120.06773 * 359.97438 * 22 21 20 24 24 C 1.38283 * 120.14290 * 0.04580 * 23 22 21 25 25 C 1.38113 * 120.06820 * 359.94780 * 24 23 22 26 26 N 1.29756 * 110.09464 * 359.69642 * 5 4 3 27 27 H 1.08993 * 109.46878 * 269.99675 * 1 2 3 28 28 H 1.09003 * 109.47377 * 29.99974 * 1 2 3 29 29 H 1.08995 * 109.46903 * 149.99743 * 1 2 3 30 30 H 1.07999 * 125.94743 * 359.97438 * 3 2 1 31 31 H 1.08999 * 109.47456 * 59.99266 * 7 6 5 32 32 H 1.09000 * 109.47119 * 299.99628 * 7 6 5 33 33 H 1.08998 * 109.47091 * 29.99984 * 11 10 8 34 34 H 1.09009 * 109.47174 * 149.99994 * 11 10 8 35 35 H 0.97003 * 119.99857 * 180.02562 * 15 14 12 36 36 H 1.08001 * 120.03470 * 359.70272 * 21 20 10 37 37 H 1.08001 * 119.96462 * 179.97438 * 22 21 20 38 38 H 1.08001 * 119.92786 * 179.97438 * 23 22 21 39 39 H 1.08001 * 119.96455 * 179.97438 * 24 23 22 40 40 H 1.08005 * 120.03372 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2274 1.1220 0.0000 4 16 3.9321 0.6780 0.0074 5 6 3.5116 -0.9791 0.0008 6 16 4.6631 -2.3128 0.0024 7 6 6.2177 -1.3858 0.0029 8 6 7.3768 -2.3488 0.0049 9 8 7.1720 -3.5443 0.0064 10 7 8.6410 -1.8818 0.0051 11 6 8.8899 -0.4418 0.1081 12 6 8.9355 0.1602 -1.2728 13 1 8.7929 -0.4671 -2.1402 14 6 9.1581 1.5119 -1.4285 15 7 9.3312 2.2758 -0.3721 16 14 9.2139 2.2581 -3.1402 17 1 7.9157 2.0273 -3.8233 18 1 9.4663 3.7178 -3.0357 19 1 10.3047 1.6224 -3.9220 20 6 9.7160 -2.7723 -0.0931 21 6 9.9300 -3.4774 -1.2701 22 6 10.9922 -4.3552 -1.3641 23 6 11.8423 -4.5319 -0.2879 24 6 11.6316 -3.8315 0.8857 25 6 10.5713 -2.9521 0.9860 26 7 2.2208 -1.1114 0.0004 27 1 -0.3633 -0.0001 1.0276 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5139 30 1 1.8343 2.1279 -0.0004 31 1 6.2660 -0.7578 0.8925 32 1 6.2673 -0.7590 -0.8874 33 1 8.0893 0.0252 0.6817 34 1 9.8427 -0.2726 0.6098 35 1 9.4875 3.2269 -0.4817 36 1 9.2641 -3.3428 -2.1097 37 1 11.1589 -4.9042 -2.2791 38 1 12.6719 -5.2192 -0.3637 39 1 12.2971 -3.9720 1.7246 40 1 10.4075 -2.4051 1.9027 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005101604.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:03 Heat of formation + Delta-G solvation = 41.579405 kcal Electronic energy + Delta-G solvation = -24790.380223 eV Core-core repulsion = 21209.457352 eV Total energy + Delta-G solvation = -3580.922871 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.071 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.04338 -39.58000 -38.05593 -35.25524 -32.80598 -32.00924 -30.82711 -30.59432 -28.78447 -27.68575 -27.19320 -25.08459 -23.32883 -22.46864 -22.04708 -20.02255 -18.98640 -18.41612 -17.18311 -16.83985 -16.57531 -16.24151 -15.64779 -15.33162 -14.94766 -14.67435 -14.51915 -14.33686 -14.09000 -13.44105 -13.28387 -13.11282 -13.00110 -12.92150 -12.60574 -12.54147 -12.27479 -12.21570 -11.74509 -11.41403 -11.25473 -11.14610 -10.92448 -10.87644 -10.63057 -10.33074 -10.00768 -9.78499 -9.60011 -9.46640 -9.07822 -8.75552 -8.69702 -8.58699 -7.85469 -7.44490 -6.33434 -4.42066 0.64871 1.11091 1.18195 1.65359 1.75172 1.77911 2.42143 2.73022 2.92499 3.15754 3.21282 3.24360 3.55466 4.11472 4.22323 4.45284 4.89293 5.00017 5.09858 5.17872 5.21715 5.24074 5.27040 5.40284 5.46830 5.59144 5.60614 5.73192 5.73820 5.89111 5.93086 6.16081 6.32941 6.51741 6.71928 6.79989 6.81775 6.97867 7.11616 7.44064 7.60072 7.64388 7.83437 7.90733 8.50982 8.67933 9.26509 10.73409 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.009852 B = 0.003819 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.396371 B = 7330.653779 C = 9476.218245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.076 3.924 3 C -0.275 4.275 4 S 0.154 5.846 5 C 0.006 3.994 6 S 0.082 5.918 7 C -0.162 4.162 8 C 0.545 3.455 9 O -0.539 6.539 10 N -0.552 5.552 11 C 0.236 3.764 12 C -0.545 4.545 13 H 0.063 0.937 14 C 0.071 3.929 15 N -0.887 5.887 16 Si 0.894 3.106 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.274 1.274 20 C 0.172 3.828 21 C -0.105 4.105 22 C -0.113 4.113 23 C -0.132 4.132 24 C -0.114 4.114 25 C -0.121 4.121 26 N -0.461 5.461 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.176 0.824 31 H 0.123 0.877 32 H 0.137 0.863 33 H 0.042 0.958 34 H 0.044 0.956 35 H 0.268 0.732 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.575 -3.650 2.042 7.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.060 4.060 3 C -0.418 4.418 4 S 0.405 5.595 5 C -0.379 4.379 6 S 0.314 5.686 7 C -0.314 4.314 8 C 0.331 3.669 9 O -0.418 6.418 10 N -0.279 5.279 11 C 0.118 3.882 12 C -0.584 4.584 13 H 0.081 0.919 14 C -0.133 4.133 15 N -0.524 5.524 16 Si 0.721 3.279 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.199 1.199 20 C 0.081 3.919 21 C -0.124 4.124 22 C -0.132 4.132 23 C -0.151 4.151 24 C -0.132 4.132 25 C -0.141 4.141 26 N -0.181 5.181 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.193 0.807 31 H 0.141 0.859 32 H 0.155 0.845 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.036 -5.245 2.127 8.274 hybrid contribution -0.550 2.376 -0.978 2.628 sum -6.586 -2.869 1.148 7.275 Atomic orbital electron populations 1.20335 0.87091 1.03252 1.02864 1.20344 0.98144 0.86343 1.01119 1.26720 0.95552 1.03883 1.15621 1.84644 1.06728 0.99928 1.68159 1.28945 0.99315 1.02194 1.07484 1.86233 0.91739 1.00592 1.90080 1.24053 0.94528 1.02782 1.09992 1.19255 0.83292 0.87779 0.76553 1.90711 1.84609 1.15715 1.50737 1.45787 1.02621 1.09554 1.69961 1.19668 0.98636 0.71632 0.98269 1.21360 1.51518 0.93319 0.92159 0.91886 1.24889 0.94353 0.96814 0.97247 1.69894 1.47349 1.06164 1.29014 0.86595 0.79028 0.78163 0.84068 1.19879 1.20958 1.19924 1.17515 0.89274 0.91921 0.93151 1.21234 0.97721 0.96695 0.96785 1.20952 0.95077 0.98461 0.98689 1.21044 0.99767 1.00518 0.93742 1.20914 0.97514 0.96882 0.97920 1.21197 0.95987 0.99050 0.97877 1.66480 1.02470 1.30912 1.18229 0.90688 0.90761 0.90601 0.80658 0.85935 0.84482 0.94026 0.93774 0.92223 0.86167 0.86183 0.86414 0.86123 0.85962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.31 36.01 0.37 -0.36 16 2 C 0.08 1.03 6.74 -84.19 -0.57 0.46 16 3 C -0.27 -3.49 11.10 29.02 0.32 -3.16 16 4 S 0.15 2.27 21.54 -107.50 -2.32 -0.04 16 5 C 0.01 0.10 7.59 51.89 0.39 0.49 16 6 S 0.08 1.38 21.45 -107.50 -2.31 -0.92 16 7 C -0.16 -2.82 3.78 36.00 0.14 -2.68 16 8 C 0.54 10.78 7.54 -10.99 -0.08 10.69 16 9 O -0.54 -11.60 15.62 5.55 0.09 -11.52 16 10 N -0.55 -11.18 2.51 -114.74 -0.29 -11.47 16 11 C 0.24 5.23 4.88 -5.19 -0.03 5.20 16 12 C -0.55 -13.25 9.16 -34.44 -0.32 -13.57 16 13 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 14 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 15 N -0.89 -22.98 13.29 55.43 0.74 -22.25 16 16 Si 0.89 19.66 29.54 -169.99 -5.02 14.63 16 17 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 20 C 0.17 3.34 4.75 -83.69 -0.40 2.94 16 21 C -0.10 -1.91 9.55 -39.39 -0.38 -2.28 16 22 C -0.11 -1.71 10.04 -39.61 -0.40 -2.11 16 23 C -0.13 -1.84 10.04 -39.55 -0.40 -2.23 16 24 C -0.11 -1.65 10.04 -39.61 -0.40 -2.04 16 25 C -0.12 -2.08 9.69 -39.39 -0.38 -2.46 16 26 N -0.46 -7.53 10.59 -10.94 -0.12 -7.65 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.18 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.12 1.99 7.08 -51.92 -0.37 1.63 16 32 H 0.14 2.45 7.75 -51.92 -0.40 2.05 16 33 H 0.04 0.92 6.47 -51.93 -0.34 0.58 16 34 H 0.04 1.04 7.86 -51.92 -0.41 0.63 16 35 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 36 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 37 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 38 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 39 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.12 1.97 8.06 -52.48 -0.42 1.55 16 LS Contribution 374.55 15.07 5.64 5.64 Total: -1.00 -28.88 374.55 -10.65 -39.53 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -4.86 Total: 3.47 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -2.21 Total: -9.44 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 0.33 Total: -41.36 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.09 Total: -11.52 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.63 kcal Atomic # 16 Polarization: 3.65 SS G_CDS: -4.62 Total: -0.97 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -28.88 -10.65 -39.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005101604.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.111 kcal (2) G-P(sol) polarization free energy of solvation -28.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds