Wall clock time and date at job start Tue Mar 31 2020 06:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86803 * 119.99687 * 2 1 4 4 H 1.48499 * 109.46904 * 274.98806 * 3 2 1 5 5 H 1.48504 * 109.47078 * 34.98664 * 3 2 1 6 6 H 1.48500 * 109.47201 * 154.98670 * 3 2 1 7 7 C 1.39897 * 120.00201 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00257 * 147.61399 * 7 2 1 9 9 C 1.41156 * 120.00339 * 327.61481 * 7 2 1 10 10 C 1.40868 * 120.16599 * 157.95181 * 9 7 2 11 11 C 1.36373 * 119.83073 * 180.02562 * 10 9 7 12 12 C 1.39485 * 120.16688 * 359.97438 * 11 10 9 13 13 N 1.39238 * 119.83326 * 179.97438 * 12 11 10 14 14 C 1.34768 * 120.00110 * 37.75903 * 13 12 11 15 15 O 1.21287 * 120.00111 * 356.70035 * 14 13 12 16 16 C 1.50698 * 120.00140 * 176.70121 * 14 13 12 17 17 S 1.81403 * 109.47412 * 179.97438 * 16 14 13 18 18 C 1.76199 * 102.99929 * 180.02562 * 17 16 14 19 19 C 1.38961 * 120.04299 * 180.02562 * 18 17 16 20 20 C 1.38115 * 119.98958 * 179.97438 * 19 18 17 21 21 C 1.38426 * 120.07824 * 359.97438 * 20 19 18 22 22 F 1.35100 * 119.95342 * 179.97438 * 21 20 19 23 23 C 1.38681 * 120.09256 * 0.02562 * 21 20 19 24 24 F 1.35093 * 119.99617 * 180.02562 * 23 21 20 25 25 C 1.38304 * 120.00691 * 359.74412 * 23 21 20 26 26 C 1.39485 * 120.33142 * 0.25362 * 12 11 10 27 27 C 1.36373 * 120.17022 * 359.48670 * 26 12 11 28 28 H 0.96996 * 120.00393 * 359.97438 * 1 2 3 29 29 H 1.08007 * 120.08498 * 359.97438 * 10 9 7 30 30 H 1.07998 * 119.92207 * 179.97438 * 11 10 9 31 31 H 0.97000 * 119.99472 * 217.76364 * 13 12 11 32 32 H 1.09001 * 109.47221 * 59.99970 * 16 14 13 33 33 H 1.09000 * 109.47007 * 300.00099 * 16 14 13 34 34 H 1.08001 * 120.00758 * 359.97438 * 19 18 17 35 35 H 1.07999 * 119.95896 * 179.97438 * 20 19 18 36 36 H 1.08003 * 120.04181 * 180.27613 * 25 23 21 37 37 H 1.08001 * 119.91004 * 179.74413 * 26 12 11 38 38 H 1.08001 * 120.08990 * 180.25018 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.3847 2.1073 -1.3948 5 1 1.4967 2.6200 0.8028 6 1 3.5890 1.4122 0.5920 7 6 2.0083 -1.2115 0.0005 8 1 2.9623 -1.2845 -0.5004 9 6 1.4672 -2.3387 0.6558 10 6 1.8855 -3.6349 0.2963 11 6 1.3579 -4.7191 0.9334 12 6 0.4069 -4.5469 1.9392 13 7 -0.1276 -5.6588 2.5848 14 6 0.6573 -6.7183 2.8632 15 8 1.8141 -6.7285 2.4987 16 6 0.0979 -7.8903 3.6276 17 16 1.3900 -9.1456 3.8409 18 6 0.5636 -10.4164 4.7391 19 6 1.2471 -11.5719 5.0978 20 6 0.5984 -12.5671 5.8023 21 6 -0.7322 -12.4149 6.1523 22 9 -1.3644 -13.3902 6.8409 23 6 -1.4175 -11.2630 5.7960 24 9 -2.7159 -11.1162 6.1390 25 6 -0.7702 -10.2621 5.0946 26 6 -0.0157 -3.2668 2.2974 27 6 0.5067 -2.1728 1.6728 28 1 -0.4850 0.8400 0.0004 29 1 2.6215 -3.7698 -0.4826 30 1 1.6772 -5.7135 0.6587 31 1 -1.0650 -5.6707 2.8340 32 1 -0.7374 -8.3196 3.0743 33 1 -0.2481 -7.5547 4.6052 34 1 2.2853 -11.6918 4.8257 35 1 1.1299 -13.4651 6.0805 36 1 -1.3021 -9.3629 4.8208 37 1 -0.7555 -3.1415 3.0742 38 1 0.1816 -1.1820 1.9540 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005565421.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:33 Heat of formation + Delta-G solvation = -74.584837 kcal Electronic energy + Delta-G solvation = -25462.720096 eV Core-core repulsion = 21225.200917 eV Total energy + Delta-G solvation = -4237.519179 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 349.069 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.83640 -48.90772 -39.75747 -39.16569 -37.34440 -34.60430 -33.20689 -31.90541 -30.80272 -30.42822 -29.62028 -28.63442 -24.94811 -23.80888 -23.41684 -21.86822 -20.91781 -19.95594 -18.86410 -17.97730 -17.61928 -17.45663 -16.90958 -16.69143 -16.65585 -16.15208 -15.58200 -15.31791 -15.30442 -15.01649 -14.66287 -14.47384 -14.08390 -13.76706 -13.62684 -13.36131 -13.06307 -12.81412 -12.67355 -12.55079 -12.17558 -12.04477 -11.78181 -11.50513 -11.20392 -11.02264 -10.61937 -10.58798 -10.28225 -10.02688 -9.85134 -9.63873 -9.49224 -9.20210 -8.81097 -7.73202 -7.63673 -7.25003 -6.97209 -4.35500 0.35517 0.49086 0.93458 1.94723 2.41446 2.80049 2.84207 3.00395 3.02143 3.06112 3.21425 3.37498 3.52265 3.83523 3.91015 4.06938 4.41307 4.43679 4.54321 4.67846 4.73135 4.91621 4.97002 5.24882 5.34672 5.48057 5.57686 5.59383 6.09938 6.21924 6.33001 6.64334 6.83325 6.92058 7.04020 7.18798 7.46763 7.55974 7.76561 7.93745 8.11905 8.17371 8.45040 8.56535 8.76018 8.89557 9.94139 Molecular weight = 349.07amu Principal moments of inertia in cm(-1) A = 0.033896 B = 0.001705 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.869373 B =16413.652455 C =17019.541136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.897 3.103 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.462 4.462 8 H 0.083 0.917 9 C 0.114 3.886 10 C -0.224 4.224 11 C -0.063 4.063 12 C -0.030 4.030 13 N -0.638 5.638 14 C 0.514 3.486 15 O -0.515 6.515 16 C -0.158 4.158 17 S 0.006 5.994 18 C -0.084 4.084 19 C -0.083 4.083 20 C -0.103 4.103 21 C 0.053 3.947 22 F -0.130 7.130 23 C 0.092 3.908 24 F -0.126 7.126 25 C -0.150 4.150 26 C -0.098 4.098 27 C -0.172 4.172 28 H 0.284 0.716 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.396 0.604 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.148 0.852 35 H 0.151 0.849 36 H 0.146 0.854 37 H 0.090 0.910 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.340 -18.530 10.490 21.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.490 4.490 8 H 0.101 0.899 9 C 0.111 3.889 10 C -0.244 4.244 11 C -0.083 4.083 12 C -0.121 4.121 13 N -0.281 5.281 14 C 0.298 3.702 15 O -0.391 6.391 16 C -0.309 4.309 17 S 0.252 5.748 18 C -0.198 4.198 19 C -0.107 4.107 20 C -0.123 4.123 21 C 0.029 3.971 22 F -0.108 7.108 23 C 0.070 3.930 24 F -0.105 7.105 25 C -0.176 4.176 26 C -0.118 4.118 27 C -0.192 4.192 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.121 0.879 31 H 0.230 0.770 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.165 0.835 35 H 0.169 0.831 36 H 0.164 0.836 37 H 0.108 0.892 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.639 -18.224 9.781 20.748 hybrid contribution -2.155 0.592 0.852 2.392 sum -3.794 -17.632 10.633 20.937 Atomic orbital electron populations 1.69937 1.08116 1.30021 1.30874 1.25963 0.94385 1.01627 0.91479 0.86489 0.81539 0.80681 0.79285 1.19385 1.19834 1.18017 1.19543 1.05376 0.93749 1.30309 0.89876 1.17617 0.89592 0.91883 0.89800 1.20598 1.07113 0.92273 1.04442 1.20294 0.96198 0.98060 0.93697 1.16999 1.08031 0.84523 1.02593 1.42758 1.11920 1.15742 1.57702 1.19374 0.86521 0.83357 0.80912 1.90756 1.16870 1.79281 1.52200 1.23966 1.02836 0.98441 1.05705 1.86482 1.13878 1.09605 1.64805 1.22180 0.96036 1.00035 1.01516 1.20686 1.00721 0.91241 0.98099 1.21027 0.91871 1.00743 0.98680 1.17636 0.92172 0.86866 1.00404 1.91532 1.82021 1.60341 1.76923 1.17515 0.79467 0.94953 1.01083 1.91546 1.32901 1.95784 1.90264 1.21093 0.94454 0.99904 1.02129 1.20152 1.00559 0.91502 0.99608 1.20622 1.02589 0.96661 0.99284 0.90487 0.88624 0.87919 0.77048 0.86508 0.86451 0.83468 0.83105 0.83637 0.89223 0.87418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.85 11.78 55.54 0.65 -18.19 16 2 C 0.09 2.11 4.77 -17.34 -0.08 2.03 16 3 Si 0.90 17.75 29.66 -169.99 -5.04 12.71 16 4 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 6 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.46 -11.92 8.94 -37.85 -0.34 -12.26 16 8 H 0.08 2.08 8.02 -52.49 -0.42 1.66 16 9 C 0.11 2.97 5.57 -106.80 -0.60 2.37 16 10 C -0.22 -5.56 9.74 -39.26 -0.38 -5.94 16 11 C -0.06 -1.46 8.59 -39.79 -0.34 -1.80 16 12 C -0.03 -0.63 6.25 -83.57 -0.52 -1.15 16 13 N -0.64 -10.27 5.30 -9.74 -0.05 -10.33 16 14 C 0.51 8.04 7.66 -10.99 -0.08 7.96 16 15 O -0.51 -10.26 13.48 5.55 0.07 -10.19 16 16 C -0.16 -1.62 4.82 36.00 0.17 -1.45 16 17 S 0.01 0.07 21.06 -107.50 -2.26 -2.20 16 18 C -0.08 -0.75 6.11 -39.07 -0.24 -0.99 16 19 C -0.08 -0.62 9.79 -39.36 -0.39 -1.00 16 20 C -0.10 -0.71 10.01 -39.56 -0.40 -1.11 16 21 C 0.05 0.48 7.30 -39.35 -0.29 0.19 16 22 F -0.13 -1.29 17.18 2.25 0.04 -1.26 16 23 C 0.09 0.88 7.30 -39.39 -0.29 0.59 16 24 F -0.13 -1.34 17.18 2.25 0.04 -1.30 16 25 C -0.15 -1.30 9.34 -39.31 -0.37 -1.67 16 26 C -0.10 -2.15 9.90 -39.79 -0.39 -2.54 16 27 C -0.17 -4.25 8.74 -39.26 -0.34 -4.60 16 28 H 0.28 6.27 8.30 -40.82 -0.34 5.93 16 29 H 0.10 2.26 8.06 -52.48 -0.42 1.84 16 30 H 0.10 2.34 6.45 -52.49 -0.34 2.00 16 31 H 0.40 4.81 8.82 -40.82 -0.36 4.45 16 32 H 0.12 0.91 7.76 -51.92 -0.40 0.50 16 33 H 0.12 0.93 7.74 -51.92 -0.40 0.53 16 34 H 0.15 0.84 8.06 -52.49 -0.42 0.41 16 35 H 0.15 0.66 8.06 -52.49 -0.42 0.23 16 36 H 0.15 1.03 5.88 -52.48 -0.31 0.72 16 37 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 38 H 0.11 2.71 6.53 -52.49 -0.34 2.36 16 LS Contribution 353.50 15.07 5.33 5.33 Total: -1.00 -29.80 353.50 -9.50 -39.30 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -3.40 Total: 7.50 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -4.87 Total: -21.37 kcal Atomic # 7 Polarization: -29.12 SS G_CDS: 0.60 Total: -28.52 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.07 Total: -10.19 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.08 Total: -2.56 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.04 Total: 12.71 kcal Atomic # 16 Polarization: 0.07 SS G_CDS: -2.26 Total: -2.20 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.80 -9.50 -39.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005565421.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.288 kcal (2) G-P(sol) polarization free energy of solvation -29.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds