Wall clock time and date at job start Tue Mar 31 2020 06:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86803 * 119.99687 * 2 1 4 4 H 1.48499 * 109.46904 * 274.98806 * 3 2 1 5 5 H 1.48504 * 109.47078 * 34.98664 * 3 2 1 6 6 H 1.48500 * 109.47201 * 154.98670 * 3 2 1 7 7 C 1.39897 * 120.00201 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00257 * 147.61399 * 7 2 1 9 9 C 1.41156 * 120.00339 * 327.61481 * 7 2 1 10 10 C 1.40868 * 120.16599 * 157.95181 * 9 7 2 11 11 C 1.36373 * 119.83073 * 180.02562 * 10 9 7 12 12 C 1.39485 * 120.16688 * 359.97438 * 11 10 9 13 13 N 1.39238 * 119.83326 * 179.97438 * 12 11 10 14 14 C 1.34768 * 120.00110 * 37.75903 * 13 12 11 15 15 O 1.21287 * 120.00111 * 356.70035 * 14 13 12 16 16 C 1.50698 * 120.00140 * 176.70121 * 14 13 12 17 17 S 1.81403 * 109.47412 * 179.97438 * 16 14 13 18 18 C 1.76199 * 102.99929 * 180.02562 * 17 16 14 19 19 C 1.38961 * 120.04299 * 180.02562 * 18 17 16 20 20 C 1.38115 * 119.98958 * 179.97438 * 19 18 17 21 21 C 1.38426 * 120.07824 * 359.97438 * 20 19 18 22 22 F 1.35100 * 119.95342 * 179.97438 * 21 20 19 23 23 C 1.38681 * 120.09256 * 0.02562 * 21 20 19 24 24 F 1.35093 * 119.99617 * 180.02562 * 23 21 20 25 25 C 1.38304 * 120.00691 * 359.74412 * 23 21 20 26 26 C 1.39485 * 120.33142 * 0.25362 * 12 11 10 27 27 C 1.36373 * 120.17022 * 359.48670 * 26 12 11 28 28 H 0.96996 * 120.00393 * 359.97438 * 1 2 3 29 29 H 1.08007 * 120.08498 * 359.97438 * 10 9 7 30 30 H 1.07998 * 119.92207 * 179.97438 * 11 10 9 31 31 H 0.97000 * 119.99472 * 217.76364 * 13 12 11 32 32 H 1.09001 * 109.47221 * 59.99970 * 16 14 13 33 33 H 1.09000 * 109.47007 * 300.00099 * 16 14 13 34 34 H 1.08001 * 120.00758 * 359.97438 * 19 18 17 35 35 H 1.07999 * 119.95896 * 179.97438 * 20 19 18 36 36 H 1.08003 * 120.04181 * 180.27613 * 25 23 21 37 37 H 1.08001 * 119.91004 * 179.74413 * 26 12 11 38 38 H 1.08001 * 120.08990 * 180.25018 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.3847 2.1073 -1.3948 5 1 1.4967 2.6200 0.8028 6 1 3.5890 1.4122 0.5920 7 6 2.0083 -1.2115 0.0005 8 1 2.9623 -1.2845 -0.5004 9 6 1.4672 -2.3387 0.6558 10 6 1.8855 -3.6349 0.2963 11 6 1.3579 -4.7191 0.9334 12 6 0.4069 -4.5469 1.9392 13 7 -0.1276 -5.6588 2.5848 14 6 0.6573 -6.7183 2.8632 15 8 1.8141 -6.7285 2.4987 16 6 0.0979 -7.8903 3.6276 17 16 1.3900 -9.1456 3.8409 18 6 0.5636 -10.4164 4.7391 19 6 1.2471 -11.5719 5.0978 20 6 0.5984 -12.5671 5.8023 21 6 -0.7322 -12.4149 6.1523 22 9 -1.3644 -13.3902 6.8409 23 6 -1.4175 -11.2630 5.7960 24 9 -2.7159 -11.1162 6.1390 25 6 -0.7702 -10.2621 5.0946 26 6 -0.0157 -3.2668 2.2974 27 6 0.5067 -2.1728 1.6728 28 1 -0.4850 0.8400 0.0004 29 1 2.6215 -3.7698 -0.4826 30 1 1.6772 -5.7135 0.6587 31 1 -1.0650 -5.6707 2.8340 32 1 -0.7374 -8.3196 3.0743 33 1 -0.2481 -7.5547 4.6052 34 1 2.2853 -11.6918 4.8257 35 1 1.1299 -13.4651 6.0805 36 1 -1.3021 -9.3629 4.8208 37 1 -0.7555 -3.1415 3.0742 38 1 0.1816 -1.1820 1.9540 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005565421.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:32 Heat of formation + Delta-G solvation = -89.720459 kcal Electronic energy + Delta-G solvation = -25463.376426 eV Core-core repulsion = 21225.200917 eV Total energy + Delta-G solvation = -4238.175509 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 349.069 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.55641 -49.63374 -41.19143 -39.79656 -39.06604 -36.23690 -34.86559 -32.65845 -31.65273 -31.44359 -31.41515 -30.14005 -26.66852 -24.44529 -24.15454 -23.50656 -22.64175 -21.40430 -19.67102 -19.30596 -18.75683 -18.41591 -18.11346 -17.87157 -17.40363 -17.09068 -16.94760 -16.70910 -16.05522 -15.81623 -15.77599 -15.42454 -15.34150 -15.13491 -14.86114 -14.43608 -14.19874 -14.04106 -13.96478 -13.82705 -13.51379 -13.33620 -13.20653 -12.83901 -12.69742 -12.42059 -12.31616 -11.93337 -11.60351 -11.36457 -11.20391 -10.86934 -10.69727 -10.51150 -10.13286 -9.49038 -9.04117 -8.75060 -8.50813 -6.24992 -0.30063 -0.11619 0.12759 0.79356 1.13060 1.18071 1.36001 1.41073 1.53506 1.70407 2.18284 2.19158 2.27341 2.62766 2.75707 3.23664 3.49653 3.62336 3.72093 3.85623 3.94002 3.95012 4.15151 4.33908 4.38455 4.48176 4.62436 4.78003 4.89583 4.91766 4.98491 5.09151 5.13940 5.25776 5.41602 5.58999 5.62921 5.84571 5.99984 6.06846 6.34173 6.58491 6.65195 6.87987 6.96901 7.31105 8.18788 Molecular weight = 349.07amu Principal moments of inertia in cm(-1) A = 0.033896 B = 0.001705 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.869373 B =16413.652455 C =17019.541136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.053 3.947 3 Si 0.970 3.030 4 H -0.260 1.260 5 H -0.260 1.260 6 H -0.262 1.262 7 C -0.504 4.504 8 H 0.075 0.925 9 C 0.084 3.916 10 C -0.246 4.246 11 C -0.074 4.074 12 C -0.010 4.010 13 N -0.633 5.633 14 C 0.515 3.485 15 O -0.560 6.560 16 C -0.143 4.143 17 S -0.037 6.037 18 C -0.083 4.083 19 C -0.079 4.079 20 C -0.092 4.092 21 C 0.042 3.958 22 F -0.138 7.138 23 C 0.074 3.926 24 F -0.137 7.137 25 C -0.147 4.147 26 C -0.097 4.097 27 C -0.191 4.191 28 H 0.295 0.705 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.419 0.581 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.165 0.835 35 H 0.179 0.821 36 H 0.162 0.838 37 H 0.126 0.874 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.214 -19.480 12.014 23.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.167 4.167 3 Si 0.790 3.210 4 H -0.184 1.184 5 H -0.184 1.184 6 H -0.186 1.186 7 C -0.532 4.532 8 H 0.093 0.907 9 C 0.081 3.919 10 C -0.266 4.266 11 C -0.094 4.094 12 C -0.103 4.103 13 N -0.279 5.279 14 C 0.301 3.699 15 O -0.439 6.439 16 C -0.293 4.293 17 S 0.208 5.792 18 C -0.197 4.197 19 C -0.103 4.103 20 C -0.112 4.112 21 C 0.018 3.982 22 F -0.117 7.117 23 C 0.052 3.948 24 F -0.115 7.115 25 C -0.172 4.172 26 C -0.117 4.117 27 C -0.211 4.211 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.122 0.878 31 H 0.257 0.743 32 H 0.168 0.832 33 H 0.167 0.833 34 H 0.183 0.817 35 H 0.197 0.803 36 H 0.180 0.820 37 H 0.143 0.857 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.563 -19.210 11.324 22.446 hybrid contribution -1.913 0.651 0.444 2.069 sum -4.475 -18.560 11.768 22.427 Atomic orbital electron populations 1.69931 1.09328 1.31514 1.31223 1.26709 0.95086 1.04404 0.90522 0.85387 0.79665 0.76226 0.79680 1.18439 1.18448 1.18580 1.19723 1.05764 0.95357 1.32315 0.90728 1.17928 0.90734 0.92403 0.90841 1.20725 1.07901 0.92794 1.05175 1.20420 0.97022 0.97515 0.94478 1.17043 1.06106 0.86127 1.01056 1.42655 1.13296 1.14542 1.57373 1.20180 0.85816 0.83924 0.79932 1.90751 1.19095 1.80255 1.53767 1.23862 1.02815 0.95870 1.06798 1.86711 1.15314 1.11131 1.66002 1.22063 0.96075 0.99743 1.01802 1.20976 1.01541 0.90608 0.97189 1.21291 0.90985 1.01453 0.97491 1.17930 0.92971 0.86666 1.00583 1.91511 1.82320 1.60661 1.77191 1.17704 0.79295 0.95665 1.02095 1.91518 1.33611 1.95893 1.90502 1.21231 0.94313 1.00206 1.01475 1.20446 1.00641 0.90880 0.99713 1.20654 1.03288 0.97268 0.99852 0.89429 0.89083 0.87848 0.74296 0.83249 0.83299 0.81728 0.80320 0.82013 0.85664 0.88387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.77 11.78 21.82 0.26 -39.51 16 2 C 0.05 2.58 4.77 85.24 0.41 2.98 16 3 Si 0.97 36.82 29.66 68.60 2.03 38.86 16 4 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 5 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 6 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 7 C -0.50 -27.15 8.94 23.39 0.21 -26.94 16 8 H 0.07 3.96 8.02 -2.91 -0.02 3.93 16 9 C 0.08 4.53 5.57 -21.27 -0.12 4.41 16 10 C -0.25 -12.73 9.74 22.48 0.22 -12.51 16 11 C -0.07 -3.51 8.59 22.14 0.19 -3.32 16 12 C -0.01 -0.42 6.25 38.57 0.24 -0.17 16 13 N -0.63 -18.74 5.30 -303.11 -1.61 -20.35 16 14 C 0.51 14.94 7.66 87.66 0.67 15.62 16 15 O -0.56 -21.92 13.48 -3.05 -0.04 -21.96 16 16 C -0.14 -2.44 4.82 71.24 0.34 -2.09 16 17 S -0.04 -0.74 21.06 -56.49 -1.19 -1.93 16 18 C -0.08 -1.26 6.11 22.60 0.14 -1.13 16 19 C -0.08 -0.96 9.79 22.41 0.22 -0.74 16 20 C -0.09 -1.02 10.01 22.29 0.22 -0.80 16 21 C 0.04 0.67 7.30 22.42 0.16 0.83 16 22 F -0.14 -2.56 17.18 44.97 0.77 -1.79 16 23 C 0.07 1.28 7.30 22.39 0.16 1.44 16 24 F -0.14 -2.71 17.18 44.97 0.77 -1.93 16 25 C -0.15 -2.14 9.34 22.44 0.21 -1.93 16 26 C -0.10 -4.14 9.90 22.14 0.22 -3.92 16 27 C -0.19 -9.61 8.74 22.48 0.20 -9.41 16 28 H 0.29 13.03 8.30 -92.71 -0.77 12.26 16 29 H 0.09 4.59 8.06 -2.91 -0.02 4.57 16 30 H 0.10 4.80 6.45 -2.91 -0.02 4.79 16 31 H 0.42 8.59 8.82 -92.71 -0.82 7.77 16 32 H 0.15 1.64 7.76 -2.39 -0.02 1.62 16 33 H 0.15 1.67 7.74 -2.39 -0.02 1.66 16 34 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 35 H 0.18 0.93 8.06 -2.91 -0.02 0.90 16 36 H 0.16 1.68 5.88 -2.91 -0.02 1.67 16 37 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 38 H 0.10 5.03 6.53 -2.91 -0.02 5.02 16 Total: -1.00 -68.00 353.50 5.02 -62.98 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: 0.32 Total: 23.32 kcal Atomic # 6 Polarization: -41.38 SS G_CDS: 3.70 Total: -37.68 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: -1.35 Total: -59.86 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.04 Total: -21.96 kcal Atomic # 9 Polarization: -5.27 SS G_CDS: 1.54 Total: -3.73 kcal Atomic # 14 Polarization: 36.82 SS G_CDS: 2.03 Total: 38.86 kcal Atomic # 16 Polarization: -0.74 SS G_CDS: -1.19 Total: -1.93 kcal Total: -68.00 5.02 -62.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005565421.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.737 kcal (2) G-P(sol) polarization free energy of solvation -68.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds