Wall clock time and date at job start Tue Mar 31 2020 05:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38291 * 119.92328 * 2 1 4 4 C 1.38107 * 120.06760 * 180.30140 * 3 2 1 5 5 C 1.38895 * 119.92763 * 359.44741 * 4 3 2 6 6 N 1.39838 * 120.07116 * 180.29999 * 5 4 3 7 7 C 1.34775 * 119.99896 * 324.59729 * 6 5 4 8 8 O 1.21660 * 120.00247 * 3.82884 * 7 6 5 9 9 C 1.47088 * 119.99527 * 183.82694 * 7 6 5 10 10 C 1.43200 * 120.00395 * 352.27206 * 9 7 6 11 11 N 7.67595 * 172.18379 * 140.78504 * 2 1 3 12 12 C 1.37869 * 119.99555 * 172.27804 * 9 7 6 13 13 C 1.46383 * 120.00152 * 346.93267 * 12 9 7 14 14 C 1.40297 * 120.11856 * 317.97700 * 13 12 9 15 15 C 1.36541 * 119.87039 * 179.71394 * 14 13 12 16 16 C 1.39274 * 120.12354 * 0.55796 * 15 14 13 17 17 O 1.35503 * 119.87666 * 179.73300 * 16 15 14 18 18 C 1.34749 * 117.00045 * 186.41916 * 17 16 15 19 19 H 1.08006 * 119.99943 * 5.64738 * 18 17 16 20 20 C 1.38766 * 120.00107 * 185.63988 * 18 17 16 21 21 N 1.31468 * 120.00217 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00206 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46707 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47203 * 120.00199 * 22 20 18 25 25 H 1.48503 * 109.47363 * 240.00319 * 22 20 18 26 26 C 1.39274 * 120.24709 * 359.72332 * 16 15 14 27 27 C 1.36538 * 120.12472 * 359.97438 * 26 16 15 28 28 C 1.38896 * 119.85418 * 0.27410 * 5 4 3 29 29 C 1.38107 * 119.92616 * 0.02562 * 28 5 4 30 30 H 1.09006 * 109.47219 * 270.25846 * 1 2 3 31 31 H 1.08997 * 109.47204 * 30.25273 * 1 2 3 32 32 H 1.08993 * 109.47146 * 150.25579 * 1 2 3 33 33 H 1.08000 * 119.96546 * 0.02562 * 3 2 1 34 34 H 1.08002 * 120.03505 * 179.71742 * 4 3 2 35 35 H 0.96998 * 119.99962 * 144.60368 * 6 5 4 36 36 H 1.08007 * 119.99851 * 166.93466 * 12 9 7 37 37 H 1.08002 * 120.06721 * 0.02562 * 14 13 12 38 38 H 1.07997 * 119.93943 * 180.27686 * 15 14 13 39 39 H 0.97002 * 120.00420 * 179.97438 * 21 20 18 40 40 H 1.08003 * 119.94103 * 179.97438 * 26 16 15 41 41 H 1.07998 * 120.06264 * 180.02562 * 27 26 16 42 42 H 1.08000 * 120.03302 * 180.02562 * 28 5 4 43 43 H 1.08004 * 119.95910 * 180.02562 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1986 0.0000 4 6 3.5779 1.2020 -0.0063 5 6 4.2740 0.0001 -0.0010 6 7 5.6723 0.0002 -0.0010 7 6 6.3462 0.9486 -0.6814 8 8 5.7399 1.8447 -1.2377 9 6 7.8146 0.9002 -0.7512 10 6 8.5379 -0.0528 0.0358 11 7 9.1117 -0.8088 0.6600 12 6 8.4946 1.7724 -1.5744 13 6 7.7673 2.5439 -2.5837 14 6 6.7594 1.9333 -3.3451 15 6 6.0802 2.6592 -4.2811 16 6 6.3942 4.0002 -4.4887 17 8 5.7207 4.7144 -5.4227 18 6 6.1581 5.9648 -5.6694 19 1 7.0627 6.3229 -5.2004 20 6 5.4463 6.7924 -6.5262 21 7 4.3450 6.3567 -7.0968 22 14 6.0531 8.5256 -6.8689 23 1 7.3059 8.7704 -6.1102 24 1 6.3168 8.6795 -8.3222 25 1 5.0191 9.5045 -6.4471 26 6 7.3978 4.6098 -3.7397 27 6 8.0792 3.8951 -2.7968 28 6 3.5780 -1.2019 0.0048 29 6 2.1969 -1.1984 0.0048 30 1 -0.3634 0.0046 1.0277 31 1 -0.3633 0.8877 -0.5177 32 1 -0.3633 -0.8922 -0.5098 33 1 1.6551 2.1328 0.0004 34 1 4.1161 2.1384 -0.0109 35 1 6.1574 -0.6824 0.4886 36 1 9.5640 1.8865 -1.4746 37 1 6.5178 0.8925 -3.1878 38 1 5.3012 2.1916 -4.8648 39 1 3.8472 6.9354 -7.6955 40 1 7.6375 5.6498 -3.9051 41 1 8.8570 4.3689 -2.2163 42 1 4.1163 -2.1382 0.0094 43 1 1.6552 -2.1327 0.0098 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005751671.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:18 Heat of formation + Delta-G solvation = 46.681538 kcal Electronic energy + Delta-G solvation = -28512.273332 eV Core-core repulsion = 24489.207979 eV Total energy + Delta-G solvation = -4023.065354 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.126 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.65968 -39.31801 -38.66394 -36.89441 -36.62995 -34.99618 -33.31836 -32.44600 -31.57229 -30.92832 -30.47166 -28.76311 -26.58064 -25.70614 -23.88088 -22.99321 -22.11211 -21.99188 -20.85201 -20.27528 -18.74953 -18.22465 -17.60327 -17.11673 -15.62212 -15.53446 -15.36821 -15.22711 -14.78086 -14.63106 -14.38102 -14.12449 -13.84451 -13.81189 -13.62873 -13.54215 -13.48419 -13.32931 -13.04415 -12.85593 -12.69681 -12.47794 -12.35238 -12.14293 -11.88581 -11.74839 -11.51052 -11.20077 -11.09254 -11.07019 -10.74514 -10.55371 -10.17936 -9.72451 -9.63577 -9.35021 -8.92801 -8.90235 -8.28007 -7.96779 -7.10618 -6.70044 -4.21604 0.45358 1.28080 1.42272 2.28015 2.35939 2.56572 2.70834 3.01720 3.02432 3.04962 3.08465 3.57956 3.79053 3.82707 3.95316 4.47842 4.70696 4.81582 4.87599 4.92325 5.01696 5.07041 5.16989 5.24152 5.38625 5.47412 5.49842 5.55391 5.57954 5.72910 5.83437 5.85778 5.87718 6.03714 6.10381 6.29861 6.33094 6.37949 6.51814 6.53938 6.62901 6.81155 6.89775 7.06039 7.15265 7.20284 7.27654 7.35487 7.43677 7.68403 7.76592 8.19928 8.74513 9.43315 10.46215 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.009173 B = 0.002988 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3051.665532 B = 9368.928794 C =11948.081826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.106 4.106 3 C -0.101 4.101 4 C -0.112 4.112 5 C 0.146 3.854 6 N -0.678 5.678 7 C 0.570 3.430 8 O -0.484 6.484 9 C -0.210 4.210 10 C 0.263 3.737 11 N -0.442 5.442 12 C 0.130 3.870 13 C -0.219 4.219 14 C 0.022 3.978 15 C -0.202 4.202 16 C 0.180 3.820 17 O -0.156 6.156 18 C -0.389 4.389 19 H 0.099 0.901 20 C 0.041 3.959 21 N -0.846 5.846 22 Si 0.945 3.055 23 H -0.264 1.264 24 H -0.273 1.273 25 H -0.273 1.273 26 C -0.251 4.251 27 C -0.018 4.018 28 C -0.145 4.145 29 C -0.104 4.104 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.125 0.875 34 H 0.142 0.858 35 H 0.404 0.596 36 H 0.134 0.866 37 H 0.107 0.893 38 H 0.118 0.882 39 H 0.275 0.725 40 H 0.130 0.870 41 H 0.112 0.888 42 H 0.122 0.878 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.326 -10.113 12.214 15.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.107 4.107 3 C -0.119 4.119 4 C -0.132 4.132 5 C 0.052 3.948 6 N -0.323 5.323 7 C 0.359 3.641 8 O -0.358 6.358 9 C -0.218 4.218 10 C -0.050 4.050 11 N -0.119 5.119 12 C 0.107 3.893 13 C -0.221 4.221 14 C 0.004 3.996 15 C -0.221 4.221 16 C 0.123 3.877 17 O -0.056 6.056 18 C -0.464 4.464 19 H 0.117 0.883 20 C -0.166 4.166 21 N -0.478 5.478 22 Si 0.769 3.231 23 H -0.188 1.188 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.270 4.270 27 C -0.036 4.036 28 C -0.166 4.166 29 C -0.123 4.123 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.143 0.857 34 H 0.160 0.840 35 H 0.240 0.760 36 H 0.152 0.848 37 H 0.125 0.875 38 H 0.136 0.864 39 H 0.085 0.915 40 H 0.147 0.853 41 H 0.130 0.870 42 H 0.140 0.860 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.249 -10.550 12.400 16.283 hybrid contribution 0.358 0.724 -0.055 0.810 sum 0.109 -9.826 12.345 15.778 Atomic orbital electron populations 1.20753 0.91333 1.02754 1.01983 1.19902 0.96077 0.93182 1.01540 1.20987 0.93728 0.97654 0.99547 1.21338 0.94114 0.98015 0.99717 1.17701 0.82247 0.94072 1.00759 1.43483 1.04780 1.31880 1.52140 1.17734 0.86405 0.81725 0.78225 1.90995 1.68134 1.32965 1.43679 1.17700 0.91290 1.05244 1.07520 1.25665 0.93693 0.92970 0.92689 1.81258 1.08013 1.11521 1.11117 1.22978 0.98385 0.83857 0.84113 1.18115 1.05367 0.95212 1.03361 1.20351 0.90062 0.97945 0.91287 1.19797 1.05237 0.92186 1.04891 1.19688 0.89996 0.91251 0.86799 1.83892 1.49055 1.26307 1.46332 1.21587 1.09489 0.87345 1.27980 0.88323 1.25442 0.95280 1.00198 0.95647 1.70007 1.14252 1.36986 1.26525 0.85576 0.79013 0.79686 0.78816 1.18770 1.19869 1.19853 1.20754 1.02633 1.01512 1.02140 1.20582 0.96282 0.92379 0.94399 1.20861 0.94528 0.96361 1.04843 1.20747 0.93230 0.97530 1.00771 0.91504 0.91506 0.91763 0.85748 0.84008 0.76034 0.84809 0.87542 0.86429 0.91500 0.85262 0.86990 0.86024 0.85997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.01 36.01 0.36 -0.58 16 2 C -0.11 -1.17 5.88 -104.59 -0.62 -1.79 16 3 C -0.10 -1.25 9.69 -39.61 -0.38 -1.64 16 4 C -0.11 -1.56 8.69 -39.39 -0.34 -1.90 16 5 C 0.15 1.88 6.29 -83.72 -0.53 1.36 16 6 N -0.68 -8.22 5.29 -10.93 -0.06 -8.28 16 7 C 0.57 7.93 6.55 -12.67 -0.08 7.85 16 8 O -0.48 -8.25 9.94 5.22 0.05 -8.20 16 9 C -0.21 -2.58 5.71 -104.52 -0.60 -3.17 16 10 C 0.26 3.19 14.21 -22.47 -0.32 2.87 16 11 N -0.44 -5.99 18.54 41.84 0.78 -5.21 16 12 C 0.13 1.57 9.53 -36.44 -0.35 1.22 16 13 C -0.22 -3.43 4.59 -105.07 -0.48 -3.92 16 14 C 0.02 0.39 6.66 -39.42 -0.26 0.13 16 15 C -0.20 -4.13 9.93 -39.81 -0.40 -4.52 16 16 C 0.18 4.10 6.66 -38.81 -0.26 3.84 16 17 O -0.16 -4.19 9.74 1.04 0.01 -4.18 16 18 C -0.39 -10.12 9.43 30.93 0.29 -9.82 16 19 H 0.10 2.35 5.29 -52.48 -0.28 2.07 16 20 C 0.04 1.06 5.50 -17.51 -0.10 0.97 16 21 N -0.85 -23.35 13.67 55.48 0.76 -22.59 16 22 Si 0.95 19.09 29.55 -169.99 -5.02 14.07 16 23 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 24 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 25 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 26 C -0.25 -5.01 9.06 -39.81 -0.36 -5.37 16 27 C -0.02 -0.29 9.75 -39.42 -0.38 -0.68 16 28 C -0.15 -1.61 9.97 -39.39 -0.39 -2.00 16 29 C -0.10 -1.09 9.69 -39.62 -0.38 -1.47 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 32 H 0.06 0.47 8.08 -51.93 -0.42 0.06 16 33 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 34 H 0.14 2.19 6.27 -52.49 -0.33 1.87 16 35 H 0.40 4.13 7.72 -40.82 -0.32 3.81 16 36 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 37 H 0.11 1.71 7.00 -52.49 -0.37 1.34 16 38 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 39 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 40 H 0.13 2.56 5.71 -52.48 -0.30 2.26 16 41 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 42 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 LS Contribution 378.78 15.07 5.71 5.71 Total: -1.00 -30.06 378.78 -7.88 -37.94 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -4.52 Total: 9.39 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -5.58 Total: -18.63 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 1.48 Total: -36.08 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.06 Total: -12.39 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.07 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.06 -7.88 -37.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005751671.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.620 kcal (2) G-P(sol) polarization free energy of solvation -30.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds