Wall clock time and date at job start Tue Mar 31 2020 06:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47232 * 2 1 4 4 H 1.09003 * 109.52307 * 305.08885 * 3 2 1 5 5 C 1.53141 * 109.50204 * 185.00104 * 3 2 1 6 6 C 1.53148 * 108.96608 * 169.33459 * 5 3 2 7 7 C 1.51501 * 108.70652 * 49.82610 * 6 5 3 8 8 S 1.75816 * 125.03462 * 163.88324 * 7 6 5 9 9 C 1.75702 * 91.21669 * 180.08328 * 8 7 6 10 10 C 1.47001 * 125.34119 * 179.91709 * 9 8 7 11 11 N 1.31791 * 126.48131 * 164.71678 * 10 9 8 12 12 N 1.28510 * 109.94603 * 179.97438 * 11 10 9 13 13 C 1.31548 * 110.10497 * 359.97438 * 12 11 10 14 14 S 1.76200 * 126.36763 * 180.26082 * 13 12 11 15 15 C 1.76188 * 100.00438 * 359.69047 * 14 13 12 16 16 H 1.08001 * 119.99986 * 0.02562 * 15 14 13 17 17 C 1.38526 * 120.00204 * 179.97438 * 15 14 13 18 18 N 1.31721 * 119.99935 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00032 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47354 * 59.99561 * 19 17 15 21 21 H 1.48497 * 109.47086 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46836 * 299.99833 * 19 17 15 23 23 N 1.36935 * 107.25542 * 0.02562 * 13 12 11 24 24 C 1.46504 * 127.17151 * 179.97438 * 23 13 12 25 25 C 1.35744 * 109.32348 * 359.65238 * 9 8 7 26 26 C 1.35029 * 124.65745 * 343.58253 * 7 6 5 27 27 C 1.52331 * 122.80688 * 0.02562 * 26 7 6 28 28 H 1.09002 * 109.46850 * 300.00218 * 1 2 3 29 29 H 1.09004 * 109.47025 * 59.99960 * 1 2 3 30 30 H 1.08993 * 109.47030 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46762 * 239.99920 * 2 1 3 32 32 H 1.08994 * 109.46996 * 120.00034 * 2 1 3 33 33 H 1.09003 * 109.55394 * 49.48419 * 5 3 2 34 34 H 1.09004 * 109.63816 * 289.23255 * 5 3 2 35 35 H 1.08995 * 109.59233 * 290.05751 * 6 5 3 36 36 H 1.09001 * 109.59548 * 169.59623 * 6 5 3 37 37 H 0.97002 * 120.00057 * 179.97438 * 18 17 15 38 38 H 1.09002 * 109.46768 * 89.97737 * 24 23 13 39 39 H 1.09000 * 109.46703 * 209.97573 * 24 23 13 40 40 H 1.08994 * 109.47338 * 329.97242 * 24 23 13 41 41 H 1.07999 * 122.39149 * 180.25037 * 25 9 8 42 42 H 1.08997 * 109.58364 * 102.34789 * 27 26 7 43 43 H 1.09003 * 109.57522 * 222.75256 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6047 1.9828 -0.8407 5 6 3.5663 1.4451 -0.1258 6 6 4.0413 2.8765 -0.3923 7 6 3.4038 3.7978 0.6275 8 16 3.9392 5.4343 0.9831 9 6 2.6744 5.6264 2.1875 10 6 2.4469 6.8324 2.9967 11 7 1.3638 7.1169 3.6916 12 7 1.5053 8.2510 4.2792 13 6 2.6847 8.7617 3.9985 14 16 3.3247 10.2960 4.5824 15 6 1.9645 10.8430 5.5596 16 1 1.0754 10.2346 5.6362 17 6 2.0358 12.0528 6.2305 18 7 3.1207 12.7941 6.1383 19 14 0.5939 12.6324 7.2671 20 1 0.3263 11.6420 8.3407 21 1 0.9192 13.9468 7.8767 22 1 -0.6099 12.7688 6.4083 23 7 3.3244 7.8765 3.1725 24 6 4.6643 8.0135 2.5959 25 6 1.9366 4.4887 2.2494 26 6 2.3365 3.4778 1.3901 27 6 1.6397 2.1256 1.3088 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8899 33 1 3.8653 0.8014 -0.9531 34 1 4.0109 1.0796 0.7999 35 1 3.7431 3.1797 -1.3959 36 1 5.1264 2.9246 -0.3008 37 1 3.1705 13.6415 6.6078 38 1 5.3974 7.5734 3.2720 39 1 4.7008 7.4993 1.6356 40 1 4.8914 9.0697 2.4514 41 1 1.0978 4.3789 2.9209 42 1 1.9442 1.5064 2.1525 43 1 0.5594 2.2696 1.3299 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005776397.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:08 Heat of formation + Delta-G solvation = 74.169612 kcal Electronic energy + Delta-G solvation = -24763.624600 eV Core-core repulsion = 21254.522130 eV Total energy + Delta-G solvation = -3509.102470 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 349.098 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.93654 -39.57494 -36.29688 -34.49227 -33.36641 -32.68826 -31.01626 -29.58295 -28.06446 -27.23247 -25.74593 -24.61137 -24.01917 -22.38715 -21.81078 -21.05116 -19.93564 -18.18377 -17.97579 -17.49967 -16.31908 -15.80245 -15.44738 -15.29451 -14.96077 -14.80561 -14.63232 -14.41967 -14.16953 -13.53363 -13.33560 -13.10798 -13.09147 -12.94656 -12.90262 -12.42842 -12.18966 -11.89502 -11.76395 -11.49233 -11.34736 -11.15346 -11.13532 -11.08301 -10.91203 -10.73169 -10.64998 -10.42795 -10.24506 -9.92112 -9.83776 -9.66517 -9.14902 -8.93167 -8.44049 -8.13512 -6.77062 -6.50540 -4.25383 0.62906 1.37804 1.84776 2.20606 2.36245 2.83387 3.20169 3.22030 3.22783 3.29520 3.62055 3.98173 4.29863 4.34879 4.48788 4.61760 4.74669 4.80785 4.88647 4.93617 4.98034 5.01313 5.11440 5.16872 5.24006 5.25733 5.28415 5.43523 5.49850 5.52287 5.58005 5.62655 5.68712 5.71039 5.73435 5.80885 5.85168 5.98204 6.12800 6.12874 6.29204 6.33485 6.52148 6.61146 7.22945 7.54031 8.33381 9.01504 9.34293 10.57545 Molecular weight = 349.10amu Principal moments of inertia in cm(-1) A = 0.024651 B = 0.002212 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.585107 B =12654.797221 C =13693.379190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C -0.088 4.088 4 H 0.074 0.926 5 C -0.109 4.109 6 C -0.044 4.044 7 C -0.191 4.191 8 S 0.115 5.885 9 C -0.093 4.093 10 C 0.196 3.804 11 N -0.260 5.260 12 N -0.302 5.302 13 C 0.177 3.823 14 S 0.146 5.854 15 C -0.533 4.533 16 H 0.106 0.894 17 C 0.076 3.924 18 N -0.878 5.878 19 Si 0.935 3.065 20 H -0.269 1.269 21 H -0.282 1.282 22 H -0.269 1.269 23 N -0.481 5.481 24 C 0.081 3.919 25 C -0.098 4.098 26 C -0.094 4.094 27 C -0.051 4.051 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.275 0.725 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.099 0.901 41 H 0.147 0.853 42 H 0.077 0.923 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.340 -22.038 -14.575 26.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C -0.107 4.107 4 H 0.092 0.908 5 C -0.148 4.148 6 C -0.084 4.084 7 C -0.309 4.309 8 S 0.382 5.618 9 C -0.213 4.213 10 C -0.071 4.071 11 N -0.103 5.103 12 N -0.148 5.148 13 C -0.193 4.193 14 S 0.378 5.622 15 C -0.682 4.682 16 H 0.124 0.876 17 C -0.134 4.134 18 N -0.513 5.513 19 Si 0.760 3.240 20 H -0.194 1.194 21 H -0.208 1.208 22 H -0.194 1.194 23 N -0.179 5.179 24 C -0.063 4.063 25 C -0.131 4.131 26 C -0.106 4.106 27 C -0.090 4.090 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.117 0.883 41 H 0.165 0.835 42 H 0.095 0.905 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.303 -20.372 -14.607 25.622 hybrid contribution -1.705 -0.742 0.828 2.036 sum 3.598 -21.114 -13.779 25.468 Atomic orbital electron populations 1.21831 0.95789 1.01530 1.02193 1.21576 0.96045 0.95952 1.02009 1.21212 0.95414 0.95918 0.98135 0.90754 1.21630 0.95554 0.95375 1.02282 1.20282 0.99399 0.92716 0.95954 1.25022 1.02208 0.98403 1.05260 1.83870 1.32270 1.10389 1.35264 1.21212 1.02892 0.94851 1.02314 1.21373 0.89919 0.90774 1.05074 1.74386 1.18589 1.09384 1.07939 1.74769 1.14368 1.03590 1.22094 1.28481 0.93521 1.01222 0.96053 1.83409 1.22330 1.02023 1.54393 1.23155 1.03407 1.08513 1.33122 0.87642 1.25066 0.97513 0.94911 0.95874 1.69970 1.26959 1.13011 1.41391 0.85941 0.80706 0.77660 0.79724 1.19388 1.20763 1.19387 1.46250 1.15358 1.16532 1.39735 1.22043 0.80876 1.04919 0.98475 1.20359 1.01261 0.90744 1.00769 1.19415 0.96643 0.97126 0.97425 1.20633 0.99624 0.91075 0.97653 0.92279 0.92737 0.92915 0.91972 0.91874 0.91192 0.91393 0.90372 0.90587 0.91523 0.89959 0.90412 0.88264 0.83511 0.90492 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 9.68 37.16 0.36 -0.57 16 2 C -0.12 -0.69 5.39 -26.73 -0.14 -0.83 16 3 C -0.09 -0.62 2.14 -90.56 -0.19 -0.81 16 4 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 5 C -0.11 -0.72 5.24 -26.58 -0.14 -0.86 16 6 C -0.04 -0.34 6.26 -27.41 -0.17 -0.51 16 7 C -0.19 -2.06 6.35 -35.05 -0.22 -2.28 16 8 S 0.12 1.40 20.17 -107.50 -2.17 -0.76 16 9 C -0.09 -1.49 6.38 -36.93 -0.24 -1.72 16 10 C 0.20 3.91 7.87 -153.75 -1.21 2.70 16 11 N -0.26 -6.07 12.22 32.47 0.40 -5.67 16 12 N -0.30 -7.76 11.02 30.80 0.34 -7.42 16 13 C 0.18 4.19 8.06 -87.74 -0.71 3.48 16 14 S 0.15 3.61 21.39 -107.50 -2.30 1.31 16 15 C -0.53 -14.92 9.36 30.84 0.29 -14.63 16 16 H 0.11 3.05 6.92 -52.49 -0.36 2.69 16 17 C 0.08 2.05 5.49 -17.49 -0.10 1.96 16 18 N -0.88 -24.32 13.22 55.48 0.73 -23.58 16 19 Si 0.93 21.30 29.55 -169.99 -5.02 16.28 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 N -0.48 -9.47 3.24 -121.50 -0.39 -9.87 16 24 C 0.08 1.15 10.67 59.85 0.64 1.79 16 25 C -0.10 -1.40 9.95 -40.35 -0.40 -1.80 16 26 C -0.09 -1.09 5.76 -104.83 -0.60 -1.69 16 27 C -0.05 -0.44 4.95 -27.09 -0.13 -0.57 16 28 H 0.06 0.37 6.79 -51.93 -0.35 0.02 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.32 8.11 -51.93 -0.42 -0.10 16 32 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 33 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 34 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.28 7.12 8.32 -40.82 -0.34 6.78 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.08 0.95 5.16 -45.17 -0.23 0.71 16 40 H 0.10 1.34 7.87 -51.93 -0.41 0.93 16 41 H 0.15 2.12 8.06 -52.49 -0.42 1.69 16 42 H 0.08 0.63 8.12 -51.93 -0.42 0.21 16 43 H 0.08 0.66 7.04 -51.93 -0.37 0.30 16 LS Contribution 375.19 15.07 5.65 5.65 Total: -1.00 -32.04 375.19 -11.66 -43.70 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -5.92 Total: -3.28 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -2.97 Total: -16.35 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: 1.08 Total: -46.54 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 5.02 SS G_CDS: -4.47 Total: 0.55 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.04 -11.66 -43.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005776397.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.867 kcal (2) G-P(sol) polarization free energy of solvation -32.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds