Wall clock time and date at job start Tue Mar 31 2020 06:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47157 * 2 1 4 4 H 1.08999 * 109.50380 * 55.07262 * 3 2 1 5 5 C 1.53150 * 109.50467 * 175.18561 * 3 2 1 6 6 C 1.53286 * 108.83560 * 190.81105 * 5 3 2 7 7 C 1.51502 * 108.64160 * 309.88825 * 6 5 3 8 8 S 1.75819 * 125.04035 * 196.46926 * 7 6 5 9 9 C 1.75703 * 91.21888 * 180.25739 * 8 7 6 10 10 C 1.47008 * 125.34177 * 179.97438 * 9 8 7 11 11 N 1.31779 * 126.47931 * 195.04724 * 10 9 8 12 12 N 1.28510 * 109.95024 * 179.97438 * 11 10 9 13 13 C 1.31557 * 110.09941 * 0.02562 * 12 11 10 14 14 S 1.76201 * 126.37259 * 179.97438 * 13 12 11 15 15 C 1.76205 * 99.99771 * 359.97438 * 14 13 12 16 16 H 1.08001 * 119.99948 * 0.02562 * 15 14 13 17 17 C 1.38526 * 119.99637 * 179.97438 * 15 14 13 18 18 N 1.31722 * 119.99979 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99732 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46895 * 90.00495 * 19 17 15 21 21 H 1.48496 * 109.46997 * 209.99953 * 19 17 15 22 22 H 1.48494 * 109.47069 * 330.00684 * 19 17 15 23 23 N 1.36941 * 107.25323 * 359.73724 * 13 12 11 24 24 C 1.46495 * 127.17366 * 180.26401 * 23 13 12 25 25 C 1.35755 * 109.32264 * 0.02562 * 9 8 7 26 26 C 1.35025 * 124.65367 * 16.77269 * 7 6 5 27 27 C 1.52340 * 122.81045 * 359.76717 * 26 7 6 28 28 H 1.09006 * 109.47138 * 60.00253 * 1 2 3 29 29 H 1.08998 * 109.46996 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47423 * 300.00458 * 1 2 3 31 31 H 1.09009 * 109.47128 * 239.99812 * 2 1 3 32 32 H 1.08996 * 109.47264 * 120.00251 * 2 1 3 33 33 H 1.08999 * 109.55157 * 310.51876 * 5 3 2 34 34 H 1.09001 * 109.55353 * 70.71504 * 5 3 2 35 35 H 1.08998 * 109.54597 * 190.19532 * 6 5 3 36 36 H 1.09001 * 109.72049 * 69.68820 * 6 5 3 37 37 H 0.97004 * 119.99617 * 179.97438 * 18 17 15 38 38 H 1.09000 * 109.47467 * 270.17515 * 24 23 13 39 39 H 1.09002 * 109.47237 * 30.17663 * 24 23 13 40 40 H 1.09001 * 109.47315 * 150.17198 * 24 23 13 41 41 H 1.07994 * 122.38268 * 179.97438 * 25 9 8 42 42 H 1.08993 * 109.58186 * 137.26514 * 27 26 7 43 43 H 1.08996 * 109.57703 * 257.67943 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6067 1.9816 0.8424 5 6 3.5667 1.4450 0.1212 6 6 4.0392 2.8779 0.3915 7 6 3.4014 3.7988 -0.6285 8 16 3.9389 5.4338 -0.9878 9 6 2.6657 5.6299 -2.1827 10 6 2.4343 6.8376 -2.9884 11 7 1.3484 7.1230 -3.6783 12 7 1.4864 8.2589 -4.2632 13 6 2.6664 8.7701 -3.9854 14 16 3.3004 10.3094 -4.5624 15 6 1.9377 10.8556 -5.5369 16 1 1.0507 10.2445 -5.6154 17 6 2.0039 12.0692 -6.2015 18 7 3.0856 12.8147 -6.1053 19 14 0.5595 12.6479 -7.2352 20 1 -0.3666 13.4437 -6.3900 21 1 1.0566 13.4898 -8.3529 22 1 -0.1596 11.4703 -7.7841 23 7 3.3080 7.8856 -3.1599 24 6 4.6471 8.0254 -2.5825 25 6 1.9284 4.4917 -2.2444 26 6 2.3320 3.4795 -1.3884 27 6 1.6356 2.1270 -1.3069 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.8681 0.8004 0.9468 34 1 4.0069 1.0794 -0.8066 35 1 5.1243 2.9274 0.3006 36 1 3.7400 3.1807 1.3950 37 1 3.1320 13.6643 -6.5710 38 1 5.3821 7.5905 -3.2598 39 1 4.8703 9.0820 -2.4340 40 1 4.6853 7.5079 -1.6239 41 1 1.0874 4.3829 -2.9131 42 1 0.5554 2.2706 -1.3250 43 1 1.9384 1.5088 -2.1519 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005776400.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:11 Heat of formation + Delta-G solvation = 74.180344 kcal Electronic energy + Delta-G solvation = -24764.194608 eV Core-core repulsion = 21255.092604 eV Total energy + Delta-G solvation = -3509.102004 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 349.098 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.93729 -39.57287 -36.29597 -34.49372 -33.36106 -32.68867 -31.01278 -29.58097 -28.06420 -27.23340 -25.74734 -24.60984 -24.01825 -22.38914 -21.81145 -21.05048 -19.93527 -18.18529 -17.97700 -17.50009 -16.31926 -15.80381 -15.44471 -15.29451 -14.96153 -14.80562 -14.62836 -14.41986 -14.16676 -13.53443 -13.33816 -13.10957 -13.09229 -12.94415 -12.90231 -12.42639 -12.18942 -11.89399 -11.76708 -11.49541 -11.35039 -11.16556 -11.13434 -11.07267 -10.91291 -10.73352 -10.64980 -10.42371 -10.22907 -9.91233 -9.84776 -9.66674 -9.15764 -8.92499 -8.44089 -8.13483 -6.77050 -6.50814 -4.25521 0.62913 1.37801 1.84775 2.20620 2.36234 2.83251 3.18924 3.20301 3.23358 3.32293 3.62070 3.98002 4.30005 4.34938 4.48746 4.61668 4.74712 4.80668 4.88452 4.93470 4.98045 5.01261 5.11483 5.16915 5.24024 5.25612 5.28250 5.43520 5.49784 5.52247 5.57972 5.62603 5.68796 5.71008 5.73367 5.80876 5.85192 5.98229 6.12782 6.12862 6.29228 6.33467 6.52180 6.61109 7.22911 7.54022 8.33787 9.01470 9.34302 10.57336 Molecular weight = 349.10amu Principal moments of inertia in cm(-1) A = 0.024644 B = 0.002212 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.898254 B =12653.152306 C =13692.962921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C -0.089 4.089 4 H 0.074 0.926 5 C -0.109 4.109 6 C -0.044 4.044 7 C -0.191 4.191 8 S 0.115 5.885 9 C -0.093 4.093 10 C 0.196 3.804 11 N -0.260 5.260 12 N -0.302 5.302 13 C 0.177 3.823 14 S 0.145 5.855 15 C -0.532 4.532 16 H 0.106 0.894 17 C 0.075 3.925 18 N -0.878 5.878 19 Si 0.934 3.066 20 H -0.273 1.273 21 H -0.281 1.281 22 H -0.265 1.265 23 N -0.481 5.481 24 C 0.081 3.919 25 C -0.098 4.098 26 C -0.094 4.094 27 C -0.051 4.051 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.274 0.726 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.147 0.853 42 H 0.079 0.921 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.404 -22.087 14.502 26.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C -0.107 4.107 4 H 0.092 0.908 5 C -0.148 4.148 6 C -0.083 4.083 7 C -0.309 4.309 8 S 0.382 5.618 9 C -0.213 4.213 10 C -0.071 4.071 11 N -0.103 5.103 12 N -0.148 5.148 13 C -0.193 4.193 14 S 0.378 5.622 15 C -0.681 4.681 16 H 0.124 0.876 17 C -0.134 4.134 18 N -0.513 5.513 19 Si 0.759 3.241 20 H -0.199 1.199 21 H -0.206 1.206 22 H -0.190 1.190 23 N -0.179 5.179 24 C -0.063 4.063 25 C -0.131 4.131 26 C -0.106 4.106 27 C -0.090 4.090 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.117 0.883 40 H 0.096 0.904 41 H 0.165 0.835 42 H 0.097 0.903 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.366 -20.424 14.535 25.636 hybrid contribution -1.703 -0.727 -0.818 2.025 sum 3.663 -21.151 13.718 25.474 Atomic orbital electron populations 1.21830 0.95791 1.01530 1.02195 1.21577 0.96045 0.95958 1.02007 1.21216 0.95422 0.95911 0.98154 0.90757 1.21655 0.95550 0.95350 1.02273 1.20307 0.99401 0.92693 0.95941 1.25026 1.02179 0.98448 1.05249 1.83871 1.31660 1.10469 1.35798 1.21217 1.02746 0.94822 1.02488 1.21372 0.89971 0.90647 1.05136 1.74382 1.18478 1.09356 1.08089 1.74776 1.14355 1.03555 1.22115 1.28483 0.93482 1.01254 0.96053 1.83419 1.22549 1.01445 1.54818 1.23204 1.03427 1.08191 1.33283 0.87583 1.25070 0.97527 0.94927 0.95876 1.69981 1.27084 1.12705 1.41552 0.85895 0.80461 0.78839 0.78908 1.19883 1.20644 1.18957 1.46249 1.15499 1.16372 1.39756 1.22042 0.80906 1.04912 0.98462 1.20361 1.01295 0.90701 1.00777 1.19416 0.96632 0.97110 0.97451 1.20634 0.99620 0.91063 0.97668 0.92283 0.92917 0.92730 0.91878 0.91973 0.91206 0.91363 0.90608 0.90337 0.91582 0.89966 0.88256 0.90404 0.83510 0.90300 0.90494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 9.68 37.16 0.36 -0.57 16 2 C -0.12 -0.69 5.39 -26.73 -0.14 -0.83 16 3 C -0.09 -0.62 2.14 -90.56 -0.19 -0.81 16 4 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 5 C -0.11 -0.72 5.26 -26.51 -0.14 -0.86 16 6 C -0.04 -0.34 6.26 -27.34 -0.17 -0.51 16 7 C -0.19 -2.06 6.35 -35.06 -0.22 -2.28 16 8 S 0.12 1.40 20.15 -107.50 -2.17 -0.76 16 9 C -0.09 -1.49 6.38 -36.92 -0.24 -1.72 16 10 C 0.20 3.91 7.87 -153.76 -1.21 2.70 16 11 N -0.26 -6.07 12.22 32.47 0.40 -5.67 16 12 N -0.30 -7.76 11.02 30.80 0.34 -7.42 16 13 C 0.18 4.19 8.07 -87.73 -0.71 3.49 16 14 S 0.14 3.59 21.39 -107.50 -2.30 1.29 16 15 C -0.53 -14.89 9.36 30.84 0.29 -14.60 16 16 H 0.11 3.07 6.92 -52.49 -0.36 2.71 16 17 C 0.08 2.04 5.49 -17.49 -0.10 1.94 16 18 N -0.88 -24.31 13.22 55.48 0.73 -23.58 16 19 Si 0.93 21.28 29.55 -169.99 -5.02 16.26 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 23 N -0.48 -9.47 3.24 -121.51 -0.39 -9.86 16 24 C 0.08 1.15 10.66 59.84 0.64 1.79 16 25 C -0.10 -1.40 9.95 -40.35 -0.40 -1.80 16 26 C -0.09 -1.09 5.76 -104.83 -0.60 -1.69 16 27 C -0.05 -0.44 4.95 -27.08 -0.13 -0.57 16 28 H 0.06 0.37 6.78 -51.93 -0.35 0.02 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.36 8.13 -51.92 -0.42 -0.06 16 32 H 0.06 0.32 8.12 -51.93 -0.42 -0.10 16 33 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 34 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.27 7.08 8.32 -40.82 -0.34 6.74 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.10 1.34 7.87 -51.93 -0.41 0.93 16 40 H 0.08 0.95 5.16 -45.03 -0.23 0.71 16 41 H 0.15 2.12 8.06 -52.49 -0.42 1.69 16 42 H 0.08 0.66 7.04 -51.93 -0.37 0.30 16 43 H 0.08 0.63 8.12 -51.93 -0.42 0.21 16 LS Contribution 375.18 15.07 5.65 5.65 Total: -1.00 -32.07 375.18 -11.65 -43.73 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -5.92 Total: -3.30 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -2.97 Total: -16.34 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: 1.08 Total: -46.53 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 5.00 SS G_CDS: -4.47 Total: 0.53 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.07 -11.65 -43.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005776400.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.908 kcal (2) G-P(sol) polarization free energy of solvation -32.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds