Wall clock time and date at job start Tue Mar 31 2020 06:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47157 * 2 1 4 4 H 1.08999 * 109.50380 * 55.07262 * 3 2 1 5 5 C 1.53150 * 109.50467 * 175.18561 * 3 2 1 6 6 C 1.53286 * 108.83560 * 190.81105 * 5 3 2 7 7 C 1.51502 * 108.64160 * 309.88825 * 6 5 3 8 8 S 1.75819 * 125.04035 * 196.46926 * 7 6 5 9 9 C 1.75703 * 91.21888 * 180.25739 * 8 7 6 10 10 C 1.47008 * 125.34177 * 179.97438 * 9 8 7 11 11 N 1.31779 * 126.47931 * 195.04724 * 10 9 8 12 12 N 1.28510 * 109.95024 * 179.97438 * 11 10 9 13 13 C 1.31557 * 110.09941 * 0.02562 * 12 11 10 14 14 S 1.76201 * 126.37259 * 179.97438 * 13 12 11 15 15 C 1.76205 * 99.99771 * 359.97438 * 14 13 12 16 16 H 1.08001 * 119.99948 * 0.02562 * 15 14 13 17 17 C 1.38526 * 119.99637 * 179.97438 * 15 14 13 18 18 N 1.31722 * 119.99979 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99732 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46895 * 90.00495 * 19 17 15 21 21 H 1.48496 * 109.46997 * 209.99953 * 19 17 15 22 22 H 1.48494 * 109.47069 * 330.00684 * 19 17 15 23 23 N 1.36941 * 107.25323 * 359.73724 * 13 12 11 24 24 C 1.46495 * 127.17366 * 180.26401 * 23 13 12 25 25 C 1.35755 * 109.32264 * 0.02562 * 9 8 7 26 26 C 1.35025 * 124.65367 * 16.77269 * 7 6 5 27 27 C 1.52340 * 122.81045 * 359.76717 * 26 7 6 28 28 H 1.09006 * 109.47138 * 60.00253 * 1 2 3 29 29 H 1.08998 * 109.46996 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47423 * 300.00458 * 1 2 3 31 31 H 1.09009 * 109.47128 * 239.99812 * 2 1 3 32 32 H 1.08996 * 109.47264 * 120.00251 * 2 1 3 33 33 H 1.08999 * 109.55157 * 310.51876 * 5 3 2 34 34 H 1.09001 * 109.55353 * 70.71504 * 5 3 2 35 35 H 1.08998 * 109.54597 * 190.19532 * 6 5 3 36 36 H 1.09001 * 109.72049 * 69.68820 * 6 5 3 37 37 H 0.97004 * 119.99617 * 179.97438 * 18 17 15 38 38 H 1.09000 * 109.47467 * 270.17515 * 24 23 13 39 39 H 1.09002 * 109.47237 * 30.17663 * 24 23 13 40 40 H 1.09001 * 109.47315 * 150.17198 * 24 23 13 41 41 H 1.07994 * 122.38268 * 179.97438 * 25 9 8 42 42 H 1.08993 * 109.58186 * 137.26514 * 27 26 7 43 43 H 1.08996 * 109.57703 * 257.67943 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6067 1.9816 0.8424 5 6 3.5667 1.4450 0.1212 6 6 4.0392 2.8779 0.3915 7 6 3.4014 3.7988 -0.6285 8 16 3.9389 5.4338 -0.9878 9 6 2.6657 5.6299 -2.1827 10 6 2.4343 6.8376 -2.9884 11 7 1.3484 7.1230 -3.6783 12 7 1.4864 8.2589 -4.2632 13 6 2.6664 8.7701 -3.9854 14 16 3.3004 10.3094 -4.5624 15 6 1.9377 10.8556 -5.5369 16 1 1.0507 10.2445 -5.6154 17 6 2.0039 12.0692 -6.2015 18 7 3.0856 12.8147 -6.1053 19 14 0.5595 12.6479 -7.2352 20 1 -0.3666 13.4437 -6.3900 21 1 1.0566 13.4898 -8.3529 22 1 -0.1596 11.4703 -7.7841 23 7 3.3080 7.8856 -3.1599 24 6 4.6471 8.0254 -2.5825 25 6 1.9284 4.4917 -2.2444 26 6 2.3320 3.4795 -1.3884 27 6 1.6356 2.1270 -1.3069 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.8681 0.8004 0.9468 34 1 4.0069 1.0794 -0.8066 35 1 5.1243 2.9274 0.3006 36 1 3.7400 3.1807 1.3950 37 1 3.1320 13.6643 -6.5710 38 1 5.3821 7.5905 -3.2598 39 1 4.8703 9.0820 -2.4340 40 1 4.6853 7.5079 -1.6239 41 1 1.0874 4.3829 -2.9131 42 1 0.5554 2.2706 -1.3250 43 1 1.9384 1.5088 -2.1519 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005776400.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:10 Heat of formation + Delta-G solvation = 58.545919 kcal Electronic energy + Delta-G solvation = -24764.872568 eV Core-core repulsion = 21255.092604 eV Total energy + Delta-G solvation = -3509.779964 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 349.098 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.61788 -40.36329 -37.14333 -36.03626 -34.75543 -34.08245 -32.26746 -30.34333 -29.22374 -28.56407 -27.78417 -25.34709 -25.12963 -23.72389 -22.85040 -22.15946 -20.74553 -19.99592 -19.16530 -18.57012 -17.75664 -17.37273 -17.00302 -16.76368 -16.45344 -15.69205 -15.51923 -15.16195 -14.89827 -14.84738 -14.52773 -14.28679 -14.07303 -13.76300 -13.67839 -13.49820 -13.31450 -13.03069 -12.99845 -12.97519 -12.63765 -12.60282 -12.52899 -12.09243 -11.98009 -11.83119 -11.60653 -11.55529 -11.43711 -11.22897 -11.20397 -11.04091 -10.92030 -10.89519 -9.49489 -9.36470 -8.62451 -8.55161 -6.34144 -0.53154 0.30461 0.59989 0.81330 0.83248 1.35618 1.37967 1.51137 1.52047 1.66914 2.00085 2.10542 2.85729 2.97178 3.19954 3.59440 3.67410 3.79813 3.92598 4.07228 4.13152 4.14221 4.23964 4.38723 4.41211 4.52099 4.52764 4.62340 4.66252 4.67671 4.83405 4.88964 4.90506 4.93935 5.02997 5.07319 5.16743 5.22671 5.26267 5.28805 5.39961 5.44324 5.51595 5.59517 5.63478 5.74032 6.19003 6.92930 7.62243 8.54099 Molecular weight = 349.10amu Principal moments of inertia in cm(-1) A = 0.024644 B = 0.002212 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.898254 B =12653.152306 C =13692.962921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.114 4.114 3 C -0.085 4.085 4 H 0.071 0.929 5 C -0.107 4.107 6 C -0.048 4.048 7 C -0.165 4.165 8 S 0.155 5.845 9 C -0.155 4.155 10 C 0.227 3.773 11 N -0.309 5.309 12 N -0.343 5.343 13 C 0.161 3.839 14 S 0.136 5.864 15 C -0.562 4.562 16 H 0.084 0.916 17 C 0.034 3.966 18 N -0.902 5.902 19 Si 0.995 3.005 20 H -0.265 1.265 21 H -0.263 1.263 22 H -0.273 1.273 23 N -0.475 5.475 24 C 0.069 3.931 25 C -0.080 4.080 26 C -0.113 4.113 27 C -0.049 4.049 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.282 0.718 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.102 0.898 41 H 0.135 0.865 42 H 0.077 0.923 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.812 -24.619 16.696 30.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.151 4.151 3 C -0.103 4.103 4 H 0.089 0.911 5 C -0.145 4.145 6 C -0.087 4.087 7 C -0.283 4.283 8 S 0.423 5.577 9 C -0.274 4.274 10 C -0.041 4.041 11 N -0.151 5.151 12 N -0.188 5.188 13 C -0.212 4.212 14 S 0.367 5.633 15 C -0.710 4.710 16 H 0.103 0.897 17 C -0.173 4.173 18 N -0.537 5.537 19 Si 0.816 3.184 20 H -0.190 1.190 21 H -0.188 1.188 22 H -0.197 1.197 23 N -0.172 5.172 24 C -0.073 4.073 25 C -0.115 4.115 26 C -0.124 4.124 27 C -0.088 4.088 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.120 0.880 41 H 0.153 0.847 42 H 0.095 0.905 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.793 -22.976 16.754 29.236 hybrid contribution -2.070 -0.286 -1.262 2.442 sum 4.723 -23.262 15.492 28.345 Atomic orbital electron populations 1.21851 0.96222 1.01772 1.01759 1.21541 0.95629 0.95181 1.02756 1.21195 0.96058 0.96367 0.96723 0.91098 1.21678 0.94785 0.94804 1.03275 1.20570 1.00264 0.92501 0.95401 1.25661 1.00790 0.97791 1.04100 1.83605 1.29327 1.11191 1.33622 1.21286 1.06490 0.94143 1.05516 1.22026 0.88563 0.90941 1.02612 1.74279 1.20710 1.09393 1.10732 1.74635 1.15867 1.04823 1.23463 1.28189 0.93833 1.01568 0.97595 1.82987 1.21968 1.02688 1.55643 1.23303 1.03970 1.08857 1.34880 0.89747 1.25892 1.00083 0.94663 0.96644 1.70027 1.28406 1.13135 1.42177 0.85000 0.77377 0.78187 0.77788 1.19008 1.18771 1.19742 1.46522 1.16859 1.15240 1.38530 1.22477 0.78714 1.06164 0.99917 1.20579 0.99998 0.90951 0.99987 1.19615 0.97543 0.97830 0.97422 1.20706 0.99297 0.89675 0.99141 0.93006 0.92380 0.92924 0.91574 0.90738 0.88878 0.91384 0.88816 0.88729 0.90907 0.87732 0.87533 0.87991 0.84679 0.90500 0.89941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.68 71.98 0.70 -0.88 16 2 C -0.11 -0.97 5.39 30.59 0.16 -0.80 16 3 C -0.08 -0.91 2.14 -10.76 -0.02 -0.93 16 4 H 0.07 0.84 8.10 -2.39 -0.02 0.82 16 5 C -0.11 -0.92 5.26 30.74 0.16 -0.76 16 6 C -0.05 -0.52 6.26 30.20 0.19 -0.33 16 7 C -0.16 -3.02 6.35 25.20 0.16 -2.86 16 8 S 0.15 3.37 20.15 -56.49 -1.14 2.23 16 9 C -0.16 -4.88 6.38 23.99 0.15 -4.73 16 10 C 0.23 9.29 7.87 135.83 1.07 10.36 16 11 N -0.31 -15.19 12.22 -51.20 -0.63 -15.82 16 12 N -0.34 -18.63 11.02 -56.46 -0.62 -19.25 16 13 C 0.16 7.95 8.07 179.34 1.45 9.40 16 14 S 0.14 7.02 21.39 -56.49 -1.21 5.81 16 15 C -0.56 -32.81 9.36 67.89 0.64 -32.18 16 16 H 0.08 5.19 6.92 -2.91 -0.02 5.17 16 17 C 0.03 1.87 5.49 84.78 0.47 2.34 16 18 N -0.90 -50.68 13.22 21.60 0.29 -50.39 16 19 Si 0.99 44.42 29.55 68.60 2.03 46.45 16 20 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 21 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 22 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 23 N -0.48 -19.01 3.24 -538.33 -1.75 -20.75 16 24 C 0.07 1.89 10.66 127.77 1.36 3.25 16 25 C -0.08 -2.26 9.95 21.77 0.22 -2.04 16 26 C -0.11 -2.38 5.76 -20.00 -0.12 -2.49 16 27 C -0.05 -0.75 4.95 30.37 0.15 -0.60 16 28 H 0.05 0.58 6.78 -2.38 -0.02 0.56 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.55 8.13 -2.38 -0.02 0.53 16 32 H 0.07 0.49 8.12 -2.39 -0.02 0.47 16 33 H 0.09 0.46 8.09 -2.39 -0.02 0.44 16 34 H 0.07 0.64 8.11 -2.39 -0.02 0.62 16 35 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.28 14.58 8.32 -92.71 -0.77 13.81 16 38 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.11 2.81 7.87 -2.39 -0.02 2.79 16 40 H 0.10 2.27 5.16 -6.77 -0.03 2.24 16 41 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 42 H 0.08 1.20 7.04 -2.39 -0.02 1.18 16 43 H 0.08 1.17 8.12 -2.39 -0.02 1.15 16 Total: -1.00 -73.45 375.18 4.71 -68.74 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: 1.01 Total: 6.24 kcal Atomic # 6 Polarization: -29.99 SS G_CDS: 6.73 Total: -23.26 kcal Atomic # 7 Polarization: -103.51 SS G_CDS: -2.71 Total: -106.22 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: 10.38 SS G_CDS: -2.35 Total: 8.04 kcal Total: -73.45 4.71 -68.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005776400.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.291 kcal (2) G-P(sol) polarization free energy of solvation -73.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds