Wall clock time and date at job start Tue Mar 31 2020 06:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00122 * 2 1 4 4 H 1.48497 * 109.47401 * 270.00319 * 3 2 1 5 5 H 1.48499 * 109.47054 * 30.00371 * 3 2 1 6 6 H 1.48497 * 109.46811 * 150.00109 * 3 2 1 7 7 C 1.37879 * 119.99518 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00162 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99762 * 179.97438 * 7 2 1 10 10 S 1.80994 * 109.47017 * 179.97438 * 9 7 2 11 11 C 1.76203 * 100.00095 * 180.02562 * 10 9 7 12 12 N 1.32869 * 119.47743 * 0.02562 * 11 10 9 13 13 N 1.28693 * 121.61917 * 179.97438 * 12 11 10 14 14 C 1.32915 * 120.44515 * 0.02562 * 13 12 11 15 15 C 1.48158 * 120.52292 * 180.02562 * 14 13 12 16 16 C 1.39442 * 120.13145 * 144.70217 * 15 14 13 17 17 C 1.37996 * 119.86326 * 179.76490 * 16 15 14 18 18 C 1.38335 * 120.13588 * 0.48487 * 17 16 15 19 19 C 1.38338 * 120.26031 * 359.78501 * 18 17 16 20 20 C 1.37991 * 120.13772 * 359.95975 * 19 18 17 21 21 C 1.40905 * 118.95152 * 359.97438 * 14 13 12 22 22 C 1.48147 * 120.74472 * 179.97438 * 21 14 13 23 23 C 1.39455 * 120.12873 * 145.00179 * 22 21 14 24 24 C 1.37995 * 119.86491 * 179.97438 * 23 22 21 25 25 C 1.38335 * 120.13531 * 0.02562 * 24 23 22 26 26 C 1.38345 * 120.26502 * 359.97438 * 25 24 23 27 27 C 1.37988 * 120.13130 * 0.02562 * 26 25 24 28 28 N 1.32680 * 119.48189 * 180.27501 * 11 10 9 29 29 H 0.97009 * 119.99413 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47201 * 59.99670 * 9 7 2 31 31 H 1.08994 * 109.47189 * 300.00211 * 9 7 2 32 32 H 1.07997 * 120.07012 * 359.97438 * 16 15 14 33 33 H 1.08006 * 119.93106 * 180.25091 * 17 16 15 34 34 H 1.07999 * 119.87189 * 179.76497 * 18 17 16 35 35 H 1.08007 * 119.93157 * 179.97438 * 19 18 17 36 36 H 1.08001 * 120.07086 * 180.02562 * 20 19 18 37 37 H 1.07996 * 120.07013 * 0.02562 * 23 22 21 38 38 H 1.08003 * 119.92966 * 179.72624 * 24 23 22 39 39 H 1.08000 * 119.87187 * 180.02562 * 25 24 23 40 40 H 1.07997 * 119.93323 * 179.97438 * 26 25 24 41 41 H 1.08007 * 120.06742 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 16 4.1147 -2.9007 -0.0010 11 6 5.8527 -2.6108 -0.0009 12 7 6.3074 -1.3624 -0.0005 13 7 7.5680 -1.1034 0.0000 14 6 8.4583 -2.0903 -0.0003 15 6 9.9100 -1.7942 0.0008 16 6 10.7921 -2.6193 0.6975 17 6 12.1437 -2.3411 0.6908 18 6 12.6229 -1.2405 0.0033 19 6 11.7519 -0.4151 -0.6850 20 6 10.3988 -0.6859 -0.6901 21 6 7.9997 -3.4226 -0.0008 22 6 8.9571 -4.5532 -0.0018 23 6 8.6558 -5.7262 0.6895 24 6 9.5513 -6.7761 0.6845 25 6 10.7462 -6.6665 -0.0040 26 6 11.0506 -5.5053 -0.6917 27 6 10.1631 -4.4487 -0.6940 28 7 6.6868 -3.6427 -0.0064 29 1 -0.4850 0.8402 0.0004 30 1 3.8752 -0.6805 0.8888 31 1 3.8745 -0.6802 -0.8911 32 1 10.4188 -3.4763 1.2383 33 1 12.8285 -2.9818 1.2267 34 1 13.6811 -1.0246 0.0041 35 1 12.1317 0.4431 -1.2197 36 1 9.7198 -0.0410 -1.2282 37 1 7.7232 -5.8132 1.2271 38 1 9.3210 -7.6834 1.2232 39 1 11.4438 -7.4909 -0.0054 40 1 11.9851 -5.4254 -1.2270 41 1 10.4017 -3.5428 -1.2316 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005990108.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:28 Heat of formation + Delta-G solvation = 132.699039 kcal Electronic energy + Delta-G solvation = -26458.667764 eV Core-core repulsion = 22816.659369 eV Total energy + Delta-G solvation = -3642.008395 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 349.094 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.79494 -39.82022 -38.84500 -35.10775 -34.23705 -33.15137 -31.81109 -31.25944 -30.50678 -30.18817 -29.38680 -25.85896 -25.48973 -23.22851 -22.64136 -22.32428 -22.10291 -21.97451 -18.63365 -18.34530 -17.63361 -17.09494 -16.69337 -16.13359 -15.84955 -15.74187 -15.01482 -14.78849 -14.49837 -14.36543 -14.07315 -13.89013 -13.83507 -13.59110 -13.14818 -12.92680 -12.67510 -12.58203 -12.25880 -11.99136 -11.73241 -11.66158 -11.46369 -11.37573 -11.23927 -10.94314 -10.83583 -10.61610 -10.30982 -9.95113 -9.64721 -9.50643 -9.32098 -9.01986 -8.95734 -8.77941 -8.48073 -7.28058 -6.26368 -4.32174 -0.02017 0.43257 0.92539 1.25155 1.29857 1.35753 1.64699 2.95839 3.23078 3.24779 3.32291 3.39550 3.51564 3.55955 3.70421 3.85530 4.19920 4.29256 4.39648 4.62906 4.64344 4.69011 4.71793 4.80050 4.86953 5.03147 5.06535 5.10508 5.15641 5.25875 5.36111 5.40673 5.55605 5.69150 5.72438 5.78783 6.11000 6.14402 6.15907 6.19438 6.23714 6.26207 6.58249 6.58731 6.62157 6.64484 6.86812 7.28625 8.15524 8.46288 8.69839 9.28636 10.84542 Molecular weight = 349.09amu Principal moments of inertia in cm(-1) A = 0.013850 B = 0.003034 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.156809 B = 9227.308784 C =11055.732791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.088 3.912 3 Si 0.874 3.126 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.257 1.257 7 C -0.529 4.529 8 H 0.085 0.915 9 C 0.016 3.984 10 S 0.042 5.958 11 C 0.229 3.771 12 N -0.283 5.283 13 N -0.163 5.163 14 C 0.032 3.968 15 C -0.041 4.041 16 C -0.087 4.087 17 C -0.126 4.126 18 C -0.106 4.106 19 C -0.125 4.125 20 C -0.080 4.080 21 C 0.217 3.783 22 C -0.064 4.064 23 C -0.067 4.067 24 C -0.129 4.129 25 C -0.097 4.097 26 C -0.129 4.129 27 C -0.074 4.074 28 N -0.451 5.451 29 H 0.270 0.730 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.131 0.869 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.943 -9.660 0.046 30.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.118 4.118 3 Si 0.700 3.300 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.181 1.181 7 C -0.568 4.568 8 H 0.103 0.897 9 C -0.133 4.133 10 S 0.280 5.720 11 C -0.144 4.144 12 N -0.136 5.136 13 N -0.012 5.012 14 C -0.122 4.122 15 C -0.043 4.043 16 C -0.106 4.106 17 C -0.144 4.144 18 C -0.125 4.125 19 C -0.143 4.143 20 C -0.099 4.099 21 C 0.057 3.943 22 C -0.066 4.066 23 C -0.086 4.086 24 C -0.147 4.147 25 C -0.115 4.115 26 C -0.147 4.147 27 C -0.093 4.093 28 N -0.172 5.172 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.149 0.851 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.147 0.853 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 27.101 -9.761 0.043 28.806 hybrid contribution 1.469 1.469 -0.019 2.078 sum 28.571 -8.292 0.024 29.750 Atomic orbital electron populations 1.69857 1.06196 1.27643 1.48558 1.24774 0.94719 0.98819 0.93477 0.86837 0.80765 0.83155 0.79286 1.19649 1.20722 1.18145 1.20365 0.86275 0.95606 1.54541 0.89683 1.21856 1.00982 0.88577 1.01845 1.86032 0.83498 1.17368 1.85083 1.27438 1.04498 0.88562 0.93887 1.74358 1.06222 1.18193 1.14789 1.73757 0.96385 1.28105 1.03001 1.21791 0.95768 0.91469 1.03126 1.18071 0.88414 0.97181 1.00651 1.21432 0.93380 0.98246 0.97576 1.20995 0.94839 0.98079 1.00445 1.21277 0.99824 0.94714 0.96656 1.21110 0.92975 1.00048 1.00207 1.21293 0.95708 0.95225 0.97664 1.20968 0.91025 0.92371 0.89985 1.18206 0.93476 0.92721 1.02213 1.21325 0.99163 0.91181 0.96956 1.21133 0.94296 0.98868 1.00443 1.21339 0.96708 0.97599 0.95885 1.21016 0.99909 0.93134 1.00675 1.21466 0.92076 0.98899 0.96907 1.69326 1.01478 1.33418 1.13020 0.91975 0.92650 0.93134 0.85101 0.85584 0.85844 0.85555 0.85177 0.84917 0.85338 0.85662 0.85386 0.84824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.35 13.96 55.43 0.77 -25.57 16 2 C 0.09 2.50 5.47 -17.82 -0.10 2.40 16 3 Si 0.87 21.27 27.47 -169.99 -4.67 16.60 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 7 C -0.53 -14.73 9.68 -34.44 -0.33 -15.07 16 8 H 0.09 2.53 7.95 -52.49 -0.42 2.11 16 9 C 0.02 0.39 3.64 36.01 0.13 0.52 16 10 S 0.04 0.89 22.17 -107.50 -2.38 -1.49 16 11 C 0.23 4.65 7.91 -90.46 -0.72 3.93 16 12 N -0.28 -5.93 10.29 30.23 0.31 -5.62 16 13 N -0.16 -3.05 11.30 33.58 0.38 -2.67 16 14 C 0.03 0.50 6.54 -82.32 -0.54 -0.04 16 15 C -0.04 -0.50 4.07 -104.92 -0.43 -0.92 16 16 C -0.09 -0.87 5.96 -39.22 -0.23 -1.10 16 17 C -0.13 -0.97 10.03 -39.63 -0.40 -1.37 16 18 C -0.11 -0.78 10.04 -39.51 -0.40 -1.18 16 19 C -0.13 -1.07 10.03 -39.64 -0.40 -1.47 16 20 C -0.08 -0.88 9.61 -39.22 -0.38 -1.26 16 21 C 0.22 3.37 6.48 -82.23 -0.53 2.84 16 22 C -0.06 -0.77 4.09 -104.92 -0.43 -1.20 16 23 C -0.07 -0.72 9.61 -39.22 -0.38 -1.09 16 24 C -0.13 -1.05 10.03 -39.63 -0.40 -1.45 16 25 C -0.10 -0.67 10.04 -39.51 -0.40 -1.07 16 26 C -0.13 -0.96 10.03 -39.63 -0.40 -1.36 16 27 C -0.07 -0.72 5.97 -39.22 -0.23 -0.96 16 28 N -0.45 -8.16 10.21 -9.62 -0.10 -8.26 16 29 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.06 1.37 7.17 -51.91 -0.37 1.00 16 31 H 0.05 1.24 7.54 -51.92 -0.39 0.85 16 32 H 0.13 1.31 5.66 -52.49 -0.30 1.01 16 33 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 34 H 0.12 0.61 8.06 -52.49 -0.42 0.18 16 35 H 0.13 0.82 8.06 -52.48 -0.42 0.39 16 36 H 0.13 1.50 7.99 -52.49 -0.42 1.08 16 37 H 0.13 1.49 8.00 -52.49 -0.42 1.07 16 38 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 39 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 40 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.13 1.33 5.65 -52.48 -0.30 1.03 16 LS Contribution 362.03 15.07 5.46 5.46 Total: -1.00 -31.65 362.03 -11.10 -42.75 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -4.32 Total: -1.34 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -6.55 Total: -19.84 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: 1.37 Total: -42.12 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Atomic # 16 Polarization: 0.89 SS G_CDS: -2.38 Total: -1.49 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.65 -11.10 -42.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005990108.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.446 kcal (2) G-P(sol) polarization free energy of solvation -31.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds