Wall clock time and date at job start Tue Mar 31 2020 05:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31565 * 1 3 3 Si 1.86797 * 119.99784 * 2 1 4 4 H 1.48500 * 109.47236 * 240.00011 * 3 2 1 5 5 H 1.48507 * 109.47422 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47217 * 120.00064 * 3 2 1 7 7 C 1.38779 * 120.00242 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00338 * 179.97438 * 7 2 1 9 9 S 1.76204 * 119.99826 * 0.02562 * 7 2 1 10 10 C 1.76199 * 99.99914 * 179.97438 * 9 7 2 11 11 N 1.32621 * 119.14046 * 0.02562 * 10 9 7 12 12 C 1.32360 * 121.03973 * 180.02562 * 11 10 9 13 13 C 1.38328 * 119.31493 * 359.71532 * 12 11 10 14 14 C 1.40092 * 118.42175 * 0.52731 * 13 12 11 15 15 C 1.47588 * 120.53427 * 179.75512 * 14 13 12 16 16 C 1.35745 * 125.33789 * 179.72219 * 15 14 13 17 17 C 1.41304 * 106.85635 * 179.73562 * 16 15 14 18 18 C 1.39993 * 106.64152 * 359.97438 * 17 16 15 19 19 C 1.39898 * 119.89099 * 180.02562 * 18 17 16 20 20 C 1.35614 * 121.71257 * 359.97438 * 19 18 17 21 21 C 1.40840 * 121.13981 * 0.02667 * 20 19 18 22 22 C 1.40394 * 121.27901 * 179.97438 * 21 20 19 23 23 C 1.36251 * 119.69644 * 179.97438 * 22 21 20 24 24 C 1.39175 * 120.94380 * 359.97438 * 23 22 21 25 25 C 1.36409 * 120.84935 * 359.97438 * 24 23 22 26 26 C 1.39819 * 119.69482 * 359.97225 * 25 24 23 27 27 O 1.34859 * 125.33886 * 359.41218 * 15 14 13 28 28 N 1.32374 * 119.14011 * 179.97438 * 10 9 7 29 29 H 0.97004 * 120.00337 * 359.97438 * 1 2 3 30 30 H 1.08004 * 120.33599 * 179.97438 * 12 11 10 31 31 H 1.07999 * 120.78793 * 180.29818 * 13 12 11 32 32 H 1.07997 * 126.57129 * 359.74971 * 16 15 14 33 33 H 1.07999 * 119.13946 * 180.02562 * 19 18 17 34 34 H 1.08000 * 119.42658 * 180.02562 * 20 19 18 35 35 H 1.07998 * 120.15241 * 359.95330 * 22 21 20 36 36 H 1.08004 * 119.52966 * 180.02562 * 23 22 21 37 37 H 1.07994 * 119.57101 * 180.02562 * 24 23 22 38 38 H 1.08006 * 120.15122 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6965 -1.2125 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6965 1.2125 7 6 2.0096 -1.2018 0.0005 8 1 3.0895 -1.2019 0.0001 9 16 1.1286 -2.7278 0.0005 10 6 2.4784 -3.8604 0.0005 11 7 3.7177 -3.3881 0.0011 12 6 4.7593 -4.2048 0.0006 13 6 4.5480 -5.5718 0.0055 14 6 3.2286 -6.0427 -0.0005 15 6 2.9496 -7.4920 -0.0010 16 6 1.7139 -8.0536 -0.0012 17 6 1.9004 -9.4543 -0.0080 18 6 3.2829 -9.6746 -0.0123 19 6 3.7805 -10.9821 -0.0200 20 6 2.9558 -12.0587 -0.0229 21 6 1.5560 -11.9039 -0.0189 22 6 0.6995 -13.0163 -0.0224 23 6 -0.6501 -12.8292 -0.0178 24 6 -1.1950 -11.5486 -0.0091 25 6 -0.3912 -10.4464 -0.0044 26 6 0.9982 -10.6024 -0.0078 27 8 3.8825 -8.4659 -0.0074 28 7 2.2290 -5.1604 0.0011 29 1 -0.4851 0.8401 0.0004 30 1 5.7637 -3.8078 0.0006 31 1 5.3805 -6.2598 0.0100 32 1 0.7692 -7.5303 0.0028 33 1 4.8491 -11.1381 -0.0228 34 1 3.3799 -13.0519 -0.0284 35 1 1.1086 -14.0158 -0.0291 36 1 -1.3064 -13.6869 -0.0201 37 1 -2.2679 -11.4259 -0.0052 38 1 -0.8261 -9.4578 0.0028 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006283493.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:21 Heat of formation + Delta-G solvation = 91.028998 kcal Electronic energy + Delta-G solvation = -25097.289286 eV Core-core repulsion = 21383.066759 eV Total energy + Delta-G solvation = -3714.222527 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.067 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.71652 -40.04171 -39.69243 -35.95606 -33.95186 -33.19448 -32.76060 -31.78724 -30.91066 -30.10343 -28.43596 -25.89161 -24.69409 -24.06743 -23.36793 -23.06347 -21.67499 -20.88160 -18.79606 -18.52806 -17.80441 -16.86597 -16.51048 -16.35419 -16.02060 -15.52473 -15.16873 -15.09532 -14.89176 -14.24088 -14.20988 -13.71079 -13.55523 -13.52232 -13.34783 -13.27069 -13.03827 -12.68535 -12.31741 -11.46668 -11.37329 -11.35449 -11.19108 -11.18312 -11.04911 -10.75637 -10.41969 -10.36942 -9.93996 -9.92817 -9.28191 -9.03018 -8.99025 -8.58297 -8.53642 -7.73428 -6.97542 -6.55928 -4.27466 0.08014 0.78091 1.02250 1.51164 1.82819 2.28400 2.63445 2.75302 2.79227 3.15756 3.17305 3.22967 3.87021 3.92421 4.09344 4.33207 4.37586 4.52001 4.57997 4.71103 4.75229 4.82108 4.90113 4.97358 5.04106 5.10514 5.22960 5.27538 5.36470 5.50299 5.57180 5.60660 5.64507 5.75226 5.83908 5.92605 6.01098 6.09866 6.25764 6.28022 6.38958 6.42094 6.69065 6.78311 6.96711 7.48869 7.55990 8.31841 8.64317 8.95772 10.51163 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.020220 B = 0.002233 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.468821 B =12537.769198 C =13912.365772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.076 3.924 3 Si 0.934 3.066 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.547 4.547 8 H 0.111 0.889 9 S 0.188 5.812 10 C 0.275 3.725 11 N -0.516 5.516 12 C 0.168 3.832 13 C -0.269 4.269 14 C 0.248 3.752 15 C 0.067 3.933 16 C -0.135 4.135 17 C -0.122 4.122 18 C 0.042 3.958 19 C -0.085 4.085 20 C -0.086 4.086 21 C -0.065 4.065 22 C -0.100 4.100 23 C -0.123 4.123 24 C -0.111 4.111 25 C -0.103 4.103 26 C -0.002 4.002 27 O -0.164 6.164 28 N -0.509 5.509 29 H 0.277 0.723 30 H 0.160 0.840 31 H 0.136 0.864 32 H 0.168 0.832 33 H 0.133 0.867 34 H 0.139 0.861 35 H 0.128 0.872 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.567 -23.940 -0.033 24.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.134 4.134 3 Si 0.759 3.241 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.695 4.695 8 H 0.129 0.871 9 S 0.435 5.565 10 C -0.094 4.094 11 N -0.235 5.235 12 C -0.004 4.004 13 C -0.301 4.301 14 C 0.097 3.903 15 C 0.017 3.983 16 C -0.156 4.156 17 C -0.123 4.123 18 C -0.008 4.008 19 C -0.104 4.104 20 C -0.104 4.104 21 C -0.065 4.065 22 C -0.118 4.118 23 C -0.141 4.141 24 C -0.129 4.129 25 C -0.121 4.121 26 C -0.002 4.002 27 O -0.062 6.062 28 N -0.230 5.230 29 H 0.087 0.913 30 H 0.177 0.823 31 H 0.154 0.846 32 H 0.185 0.815 33 H 0.151 0.849 34 H 0.156 0.844 35 H 0.146 0.854 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.495 -23.050 -0.032 23.099 hybrid contribution 2.590 0.536 0.003 2.644 sum 4.084 -22.514 -0.029 22.882 Atomic orbital electron populations 1.69928 1.06230 1.28858 1.45373 1.25176 0.95148 0.99885 0.93225 0.85962 0.79125 0.79582 0.79436 1.19420 1.20719 1.19425 1.23538 0.98000 0.89905 1.58060 0.87117 1.83772 0.99236 0.94615 1.78902 1.26280 0.97230 0.91977 0.93885 1.68938 0.98949 1.38999 1.16649 1.23052 0.98538 0.89473 0.89345 1.22350 0.97228 0.98073 1.12415 1.18390 0.90229 0.87836 0.93858 1.19665 0.86022 0.86792 1.05804 1.21468 0.98789 0.91286 1.04055 1.19695 0.92829 0.93176 1.06584 1.19666 0.90685 0.85572 1.04837 1.19483 1.00842 0.86905 1.03123 1.20658 0.91763 0.98248 0.99718 1.17948 0.93630 0.92456 1.02451 1.20958 0.93411 0.97604 0.99858 1.20848 0.95257 0.97312 1.00671 1.20929 1.00152 0.92368 0.99486 1.20937 0.92049 0.99709 0.99432 1.18249 0.92636 0.90348 0.98998 1.84047 1.35291 1.13009 1.73818 1.68394 1.34276 1.02073 1.18260 0.91333 0.82261 0.84607 0.81457 0.84949 0.84357 0.85420 0.85911 0.85697 0.85148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.95 13.22 55.49 0.73 -23.22 16 2 C 0.08 2.02 5.49 -17.47 -0.10 1.92 16 3 Si 0.93 20.57 29.55 -169.99 -5.02 15.55 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 7 C -0.55 -14.85 9.24 30.93 0.29 -14.57 16 8 H 0.11 3.01 6.50 -52.49 -0.34 2.67 16 9 S 0.19 4.80 21.83 -107.50 -2.35 2.45 16 10 C 0.27 6.43 7.84 -90.94 -0.71 5.71 16 11 N -0.52 -11.54 8.44 -13.52 -0.11 -11.65 16 12 C 0.17 2.98 11.29 -17.29 -0.20 2.78 16 13 C -0.27 -4.48 9.84 -38.85 -0.38 -4.87 16 14 C 0.25 4.62 6.78 -82.71 -0.56 4.06 16 15 C 0.07 1.11 7.01 -36.66 -0.26 0.85 16 16 C -0.14 -2.09 10.52 -39.31 -0.41 -2.51 16 17 C -0.12 -1.72 6.23 -104.96 -0.65 -2.38 16 18 C 0.04 0.58 7.40 -38.30 -0.28 0.29 16 19 C -0.09 -0.87 9.91 -39.90 -0.40 -1.27 16 20 C -0.09 -0.76 9.68 -39.54 -0.38 -1.15 16 21 C -0.06 -0.68 5.74 -106.82 -0.61 -1.29 16 22 C -0.10 -0.83 9.77 -39.49 -0.39 -1.22 16 23 C -0.12 -0.98 9.95 -39.95 -0.40 -1.38 16 24 C -0.11 -1.00 9.96 -39.89 -0.40 -1.39 16 25 C -0.10 -1.14 9.76 -39.65 -0.39 -1.52 16 26 C 0.00 -0.03 5.89 -104.91 -0.62 -0.64 16 27 O -0.16 -2.47 10.43 2.41 0.03 -2.45 16 28 N -0.51 -10.90 10.10 -10.07 -0.10 -11.00 16 29 H 0.28 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.16 2.16 8.06 -52.48 -0.42 1.74 16 31 H 0.14 1.85 7.96 -52.49 -0.42 1.43 16 32 H 0.17 2.50 8.06 -52.49 -0.42 2.08 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 35 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 37 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.13 1.34 8.06 -52.48 -0.42 0.91 16 LS Contribution 354.40 15.07 5.34 5.34 Total: -1.00 -31.03 354.40 -11.61 -42.63 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -3.28 Total: 0.90 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -6.84 Total: -18.56 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: 0.52 Total: -45.86 kcal Atomic # 8 Polarization: -2.47 SS G_CDS: 0.03 Total: -2.45 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 4.80 SS G_CDS: -2.35 Total: 2.45 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.03 -11.61 -42.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006283493.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.664 kcal (2) G-P(sol) polarization free energy of solvation -31.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds