Wall clock time and date at job start Tue Mar 31 2020 05:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35977 * 116.99711 * 2 1 4 4 C 1.38715 * 119.98290 * 179.97438 * 3 2 1 5 5 C 1.38096 * 120.01696 * 179.97438 * 4 3 2 6 6 C 1.38850 * 119.98191 * 0.02562 * 5 4 3 7 7 N 1.40092 * 120.01430 * 179.97438 * 6 5 4 8 8 C 1.34780 * 120.00223 * 171.42879 * 7 6 5 9 9 S 1.71200 * 119.99766 * 108.11663 * 8 7 6 10 10 N 1.34775 * 119.99997 * 288.12175 * 8 7 6 11 11 C 1.46501 * 119.99914 * 184.43444 * 10 8 7 12 12 C 1.50705 * 109.46891 * 269.99780 * 11 10 8 13 13 H 1.08000 * 119.99932 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99772 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99953 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99847 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46968 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.46824 * 120.00148 * 16 14 12 19 19 H 1.48500 * 109.47140 * 240.00202 * 16 14 12 20 20 C 1.46496 * 120.00189 * 4.43233 * 10 8 7 21 21 C 1.53001 * 109.47058 * 238.66428 * 20 10 8 22 22 C 1.53004 * 109.47331 * 179.97438 * 21 20 10 23 23 C 1.53003 * 109.47129 * 59.99313 * 22 21 20 24 24 C 1.53001 * 109.47216 * 300.00644 * 23 22 21 25 25 C 1.52991 * 109.47426 * 59.99837 * 24 23 22 26 26 C 1.38848 * 119.97181 * 0.25295 * 6 5 4 27 27 C 1.38099 * 119.97880 * 359.51040 * 26 6 5 28 28 H 1.09005 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47731 * 300.00253 * 1 2 3 30 30 H 1.09004 * 109.46914 * 60.00545 * 1 2 3 31 31 H 1.08002 * 119.99447 * 359.97438 * 4 3 2 32 32 H 1.08004 * 120.00996 * 179.97438 * 5 4 3 33 33 H 0.97000 * 120.00471 * 351.43688 * 7 6 5 34 34 H 1.08997 * 109.47370 * 29.99752 * 11 10 8 35 35 H 1.08999 * 109.47481 * 149.99726 * 11 10 8 36 36 H 0.97001 * 119.99873 * 179.97438 * 15 14 12 37 37 H 1.09000 * 109.46919 * 358.65908 * 20 10 8 38 38 H 1.09000 * 109.46832 * 299.99534 * 21 20 10 39 39 H 1.09002 * 109.47637 * 59.99545 * 21 20 10 40 40 H 1.09000 * 109.46517 * 300.00037 * 22 21 20 41 41 H 1.08995 * 109.47158 * 179.97438 * 22 21 20 42 42 H 1.08995 * 109.47151 * 179.97438 * 23 22 21 43 43 H 1.09010 * 109.46911 * 60.00357 * 23 22 21 44 44 H 1.08998 * 109.47008 * 299.99266 * 24 23 22 45 45 H 1.09000 * 109.46592 * 179.97438 * 24 23 22 46 46 H 1.09000 * 109.47855 * 179.97438 * 25 24 23 47 47 H 1.09008 * 109.47574 * 59.99650 * 25 24 23 48 48 H 1.07994 * 120.00960 * 179.73229 * 26 6 5 49 49 H 1.08004 * 119.98726 * 180.23542 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 3.4315 1.2839 0.0005 5 6 4.0591 2.5140 0.0000 6 6 3.3032 3.6786 -0.0005 7 7 3.9391 4.9269 -0.0005 8 6 3.2168 6.0513 -0.1750 9 16 2.9547 7.1133 1.1420 10 7 2.7007 6.3396 -1.3862 11 6 1.9988 7.6075 -1.6004 12 6 0.5334 7.4277 -1.2983 13 1 0.1620 6.4651 -0.9791 14 6 -0.3332 8.4921 -1.4294 15 7 0.1190 9.6641 -1.8186 16 14 -2.1498 8.2691 -1.0557 17 1 -2.4010 6.8656 -0.6405 18 1 -2.5457 9.1878 0.0417 19 1 -2.9465 8.5767 -2.2705 20 6 2.8416 5.3850 -2.4885 21 6 3.5794 6.0532 -3.6505 22 6 3.7271 5.0561 -4.8016 23 6 2.3410 4.6068 -5.2683 24 6 1.6033 3.9387 -4.1063 25 6 1.4556 4.9358 -2.9553 26 6 1.9166 3.6056 0.0048 27 6 1.2904 2.3747 0.0004 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 4.0194 0.3779 0.0014 32 1 5.1377 2.5701 0.0008 33 1 4.8994 4.9820 0.1249 34 1 2.4149 8.3691 -0.9410 35 1 2.1203 7.9194 -2.6378 36 1 -0.4907 10.4128 -1.9112 37 1 3.4086 4.5184 -2.1485 38 1 3.0124 6.9197 -3.9906 39 1 4.5670 6.3728 -3.3182 40 1 4.2943 4.1898 -4.4612 41 1 4.2523 5.5322 -5.6296 42 1 2.4463 3.8969 -6.0886 43 1 1.7738 5.4732 -5.6087 44 1 2.1705 3.0724 -3.7660 45 1 0.6157 3.6191 -4.4387 46 1 0.9296 4.4600 -2.1276 47 1 0.8884 5.8022 -3.2956 48 1 1.3281 4.5111 0.0087 49 1 0.2119 2.3178 0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006411096.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:38 Heat of formation + Delta-G solvation = 8.137591 kcal Electronic energy + Delta-G solvation = -30246.489810 eV Core-core repulsion = 26493.030111 eV Total energy + Delta-G solvation = -3753.459699 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.63309 -39.54795 -38.01070 -36.49670 -34.54882 -32.59231 -31.17890 -30.60655 -30.05548 -29.11732 -27.52250 -26.87869 -24.25637 -23.28975 -22.55259 -22.41340 -21.81828 -20.38279 -19.23832 -18.24750 -17.72414 -17.36184 -16.73663 -16.47903 -15.74194 -15.69156 -15.31210 -14.67767 -14.60184 -14.15370 -14.10299 -13.74923 -13.62787 -13.27291 -13.22643 -13.05526 -12.80308 -12.65543 -12.27187 -12.06083 -11.98134 -11.82247 -11.52084 -11.33990 -11.07977 -10.98361 -10.88005 -10.79570 -10.74096 -10.65568 -10.49998 -10.16225 -10.05867 -9.82869 -9.58202 -9.18721 -9.00608 -8.51680 -7.40185 -7.07729 -6.50314 -6.13469 -4.16535 1.30119 1.35588 1.63447 2.63904 3.25220 3.26589 3.34856 3.35891 3.56906 3.64461 3.91696 4.38001 4.75521 4.78059 4.82804 4.86426 4.99418 5.02052 5.06973 5.18493 5.22632 5.24001 5.34716 5.36534 5.40722 5.45300 5.49492 5.58041 5.61707 5.68034 5.80370 5.90792 6.00030 6.06424 6.11694 6.16268 6.25595 6.29558 6.33684 6.41650 6.45638 6.46701 6.64550 6.75136 7.08211 7.17441 7.29939 7.44978 7.59229 7.77576 7.81457 8.02501 8.80338 9.45605 10.95098 Molecular weight = 348.16amu Principal moments of inertia in cm(-1) A = 0.008558 B = 0.004621 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3270.916444 B = 6057.954360 C = 6398.654172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.322 6.322 3 C 0.084 3.916 4 C -0.114 4.114 5 C -0.136 4.136 6 C 0.163 3.837 7 N -0.694 5.694 8 C 0.547 3.453 9 S -0.601 6.601 10 N -0.489 5.489 11 C 0.226 3.774 12 C -0.511 4.511 13 H 0.058 0.942 14 C 0.069 3.931 15 N -0.888 5.888 16 Si 0.896 3.104 17 H -0.274 1.274 18 H -0.281 1.281 19 H -0.285 1.285 20 C 0.118 3.882 21 C -0.128 4.128 22 C -0.111 4.111 23 C -0.121 4.121 24 C -0.114 4.114 25 C -0.124 4.124 26 C -0.124 4.124 27 C -0.161 4.161 28 H 0.096 0.904 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.419 0.581 34 H 0.077 0.923 35 H 0.044 0.956 36 H 0.264 0.736 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.066 0.934 44 H 0.056 0.944 45 H 0.063 0.937 46 H 0.067 0.933 47 H 0.092 0.908 48 H 0.133 0.867 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.859 -17.673 -5.573 19.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.236 6.236 3 C 0.038 3.962 4 C -0.133 4.133 5 C -0.158 4.158 6 C 0.063 3.937 7 N -0.331 5.331 8 C 0.195 3.805 9 S -0.466 6.466 10 N -0.186 5.186 11 C 0.107 3.893 12 C -0.550 4.550 13 H 0.077 0.923 14 C -0.134 4.134 15 N -0.526 5.526 16 Si 0.724 3.276 17 H -0.198 1.198 18 H -0.207 1.207 19 H -0.211 1.211 20 C 0.011 3.989 21 C -0.166 4.166 22 C -0.149 4.149 23 C -0.159 4.159 24 C -0.152 4.152 25 C -0.163 4.163 26 C -0.146 4.146 27 C -0.180 4.180 28 H 0.114 0.886 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.260 0.740 34 H 0.095 0.905 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.111 0.889 48 H 0.151 0.849 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.519 -16.793 -4.992 18.369 hybrid contribution -0.837 -0.345 -0.332 0.964 sum 4.683 -17.138 -5.324 18.547 Atomic orbital electron populations 1.23007 0.78738 1.03524 1.01462 1.86028 1.21043 1.26934 1.89571 1.18829 0.92207 0.84001 1.01147 1.20078 0.91225 0.97667 1.04331 1.20387 0.99382 0.90006 1.06024 1.17715 0.91932 0.84500 0.99546 1.41879 1.10155 1.01695 1.79339 1.22081 0.83069 0.86711 0.88642 1.93119 1.71877 1.51851 1.29764 1.49091 1.43847 1.19448 1.06168 1.20116 0.92471 0.78003 0.98756 1.21030 0.90619 0.96862 1.46458 0.92342 1.24799 0.98891 0.94821 0.94861 1.69913 1.35307 1.00951 1.46463 0.86461 0.84786 0.78375 0.77951 1.19837 1.20729 1.21097 1.21573 0.98167 0.92084 0.87042 1.21893 1.00339 0.99511 0.94870 1.21453 0.97292 0.98628 0.97552 1.21565 0.96098 1.00570 0.97621 1.21491 1.00264 0.97973 0.95447 1.21911 0.95784 1.00498 0.98091 1.20775 0.92646 0.98553 1.02652 1.21014 0.99992 0.91470 1.05520 0.88573 0.92745 0.92727 0.85154 0.85194 0.74021 0.90524 0.93821 0.92630 0.89407 0.90143 0.92042 0.92251 0.91764 0.92293 0.91520 0.92495 0.91831 0.91465 0.88904 0.84875 0.85364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -3.82 10.50 -19.67 -0.21 -4.03 16 3 C 0.08 1.07 6.69 -39.23 -0.26 0.81 16 4 C -0.11 -1.32 9.98 -39.46 -0.39 -1.71 16 5 C -0.14 -1.57 9.90 -39.41 -0.39 -1.96 16 6 C 0.16 2.32 4.78 -83.63 -0.40 1.92 16 7 N -0.69 -10.48 4.51 -11.37 -0.05 -10.53 16 8 C 0.55 10.53 5.52 -86.92 -0.48 10.05 16 9 S -0.60 -14.57 28.84 -107.50 -3.10 -17.67 16 10 N -0.49 -9.23 2.31 -169.48 -0.39 -9.62 16 11 C 0.23 5.27 4.34 -5.19 -0.02 5.25 16 12 C -0.51 -13.03 7.79 -34.44 -0.27 -13.30 16 13 H 0.06 1.51 7.62 -52.49 -0.40 1.11 16 14 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 15 N -0.89 -24.89 13.29 55.43 0.74 -24.15 16 16 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 20 C 0.12 1.80 1.73 -67.93 -0.12 1.68 16 21 C -0.13 -1.75 5.16 -26.73 -0.14 -1.89 16 22 C -0.11 -1.22 5.92 -26.73 -0.16 -1.38 16 23 C -0.12 -1.35 5.92 -26.73 -0.16 -1.51 16 24 C -0.11 -1.38 5.92 -26.74 -0.16 -1.54 16 25 C -0.12 -1.91 4.44 -26.74 -0.12 -2.03 16 26 C -0.12 -1.95 7.09 -39.41 -0.28 -2.23 16 27 C -0.16 -2.19 9.03 -39.46 -0.36 -2.55 16 28 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 30 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 31 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 32 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 33 H 0.42 5.28 8.83 -40.82 -0.36 4.92 16 34 H 0.08 2.08 6.70 -51.93 -0.35 1.73 16 35 H 0.04 1.04 6.36 -51.93 -0.33 0.71 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.09 1.25 5.44 -51.93 -0.28 0.97 16 38 H 0.08 1.26 6.62 -51.93 -0.34 0.92 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.07 1.11 6.16 -51.93 -0.32 0.79 16 47 H 0.09 1.68 6.92 -51.92 -0.36 1.33 16 48 H 0.13 2.55 6.62 -52.49 -0.35 2.20 16 49 H 0.13 1.59 6.29 -52.48 -0.33 1.26 16 LS Contribution 392.22 15.07 5.91 5.91 Total: -1.00 -30.99 392.22 -12.51 -43.50 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -7.58 Total: 7.90 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -2.81 Total: -7.40 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 0.29 Total: -44.30 kcal Atomic # 8 Polarization: -3.82 SS G_CDS: -0.21 Total: -4.03 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -14.57 SS G_CDS: -3.10 Total: -17.67 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.99 -12.51 -43.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006411096.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.636 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds