Wall clock time and date at job start Tue Mar 31 2020 06:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76203 * 102.99771 * 2 1 4 4 C 1.39347 * 119.90718 * 179.97438 * 3 2 1 5 5 C 1.36565 * 120.09117 * 180.25159 * 4 3 2 6 6 C 1.40093 * 119.90586 * 359.45791 * 5 4 3 7 7 C 1.46821 * 120.08937 * 180.27111 * 6 5 4 8 8 C 1.35204 * 119.99900 * 44.09013 * 7 6 5 9 9 C 1.41667 * 120.00420 * 10.55345 * 8 7 6 10 10 O 1.21661 * 119.99461 * 7.30500 * 9 8 7 11 11 O 1.34939 * 120.00352 * 187.29860 * 9 8 7 12 12 C 1.42904 * 117.00187 * 179.97438 * 11 9 8 13 13 C 1.50699 * 109.47112 * 180.02562 * 12 11 9 14 14 O 1.21272 * 120.00169 * 359.97438 * 13 12 11 15 15 N 1.34776 * 119.99618 * 180.02562 * 13 12 11 16 16 C 1.46496 * 120.00365 * 359.97438 * 15 13 12 17 17 C 1.46499 * 120.00116 * 179.97438 * 15 13 12 18 18 C 1.50701 * 109.47299 * 89.99504 * 17 15 13 19 19 H 1.08008 * 119.99801 * 0.02562 * 18 17 15 20 20 C 1.37873 * 120.00305 * 180.02562 * 18 17 15 21 21 N 1.31510 * 119.99925 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00214 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46957 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47348 * 119.99966 * 22 20 18 25 25 H 1.48501 * 109.47275 * 240.00031 * 22 20 18 26 26 C 1.40100 * 119.82030 * 0.54298 * 6 5 4 27 27 C 1.36559 * 119.90611 * 359.72738 * 26 6 5 28 28 H 1.08994 * 109.47370 * 300.00169 * 1 2 3 29 29 H 1.09002 * 109.46523 * 60.00065 * 1 2 3 30 30 H 1.08996 * 109.47005 * 179.97438 * 1 2 3 31 31 H 1.08003 * 119.95660 * 359.97438 * 4 3 2 32 32 H 1.08005 * 120.04244 * 179.72366 * 5 4 3 33 33 H 1.08001 * 120.00400 * 224.08549 * 7 6 5 34 34 H 1.08002 * 119.99924 * 190.55450 * 8 7 6 35 35 H 1.09004 * 109.46920 * 300.00476 * 12 11 9 36 36 H 1.09001 * 109.46857 * 60.00048 * 12 11 9 37 37 H 1.09002 * 109.47198 * 89.99903 * 16 15 13 38 38 H 1.09003 * 109.47761 * 210.00142 * 16 15 13 39 39 H 1.09004 * 109.47399 * 330.00216 * 16 15 13 40 40 H 1.09000 * 109.47944 * 209.99985 * 17 15 13 41 41 H 1.09002 * 109.46977 * 330.00351 * 17 15 13 42 42 H 0.97003 * 119.99911 * 180.02562 * 21 20 18 43 43 H 1.07994 * 120.04604 * 179.75956 * 26 6 5 44 44 H 1.08010 * 119.95226 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5435 2.1222 0.0005 5 6 3.8549 3.4518 0.0057 6 6 2.8319 4.4089 -0.0010 7 6 3.1621 5.8395 -0.0014 8 6 4.1378 6.3077 -0.8119 9 6 4.6868 5.4722 -1.8156 10 8 4.1927 4.3828 -2.0374 11 8 5.7574 5.8847 -2.5258 12 6 6.2589 4.9909 -3.5217 13 6 7.4468 5.6168 -4.2060 14 8 7.8263 6.7197 -3.8740 15 7 8.0868 4.9511 -5.1878 16 6 7.6281 3.6190 -5.5892 17 6 9.2412 5.5597 -5.8535 18 6 10.5017 5.1808 -5.1196 19 1 10.4482 4.5494 -4.2449 20 6 11.7231 5.6401 -5.5646 21 7 11.7882 6.4093 -6.6293 22 14 13.2856 5.1698 -4.6553 23 1 12.9436 4.3026 -3.4993 24 1 14.1910 4.4344 -5.5744 25 1 13.9644 6.3980 -4.1696 26 6 1.4927 3.9972 -0.0015 27 6 1.1898 2.6656 -0.0010 28 1 -0.3634 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 4.3317 1.3838 0.0014 32 1 4.8886 3.7651 0.0107 33 1 2.6257 6.5178 0.6455 34 1 4.4988 7.3188 -0.6940 35 1 6.5623 4.0557 -3.0510 36 1 5.4791 4.7915 -4.2567 37 1 6.8889 3.7137 -6.3847 38 1 8.4759 3.0357 -5.9486 39 1 7.1780 3.1163 -4.7331 40 1 9.2980 5.2022 -6.8816 41 1 9.1318 6.6442 -5.8514 42 1 12.6476 6.7321 -6.9426 43 1 0.7012 4.7318 -0.0027 44 1 0.1577 2.3473 -0.0010 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006497462.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:48 Heat of formation + Delta-G solvation = -53.557855 kcal Electronic energy + Delta-G solvation = -27187.540934 eV Core-core repulsion = 23197.854163 eV Total energy + Delta-G solvation = -3989.686771 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 349.118 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.94603 -39.45374 -38.70505 -36.59261 -34.83748 -34.25597 -32.66017 -31.61695 -30.64022 -29.38565 -28.99484 -27.32505 -25.77656 -24.87258 -22.91630 -22.77659 -22.13702 -19.81176 -18.74128 -18.32553 -17.89205 -16.79919 -16.72471 -16.40910 -16.13135 -15.50828 -15.49150 -15.09183 -14.91654 -14.55663 -14.34153 -14.28171 -14.09256 -13.90605 -13.61949 -13.16976 -13.10257 -13.00312 -12.64105 -12.30973 -12.23344 -12.10077 -11.89944 -11.79769 -11.52051 -11.23332 -10.91668 -10.87871 -10.61693 -10.59122 -10.55804 -10.25780 -10.17719 -9.63781 -9.41980 -9.01250 -8.94397 -8.45607 -7.72782 -7.58644 -6.06259 -4.11131 0.16813 1.17285 1.22153 1.34879 2.04921 2.67228 2.88917 3.27065 3.29553 3.37321 3.41956 3.49970 3.97800 4.35928 4.43450 4.50294 4.60802 4.61190 4.62363 4.80621 4.95630 5.02229 5.09334 5.16939 5.23569 5.27656 5.28773 5.29399 5.45316 5.59615 5.62241 5.73383 5.80330 5.88411 6.01070 6.11484 6.17117 6.27208 6.42568 6.61550 6.98322 7.38929 7.46451 7.75735 7.90008 8.19755 8.29247 8.84785 8.99530 9.53934 11.01941 Molecular weight = 349.12amu Principal moments of inertia in cm(-1) A = 0.015391 B = 0.002055 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.749492 B =13619.449096 C =14447.379745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 S -0.118 6.118 3 C -0.070 4.070 4 C -0.108 4.108 5 C -0.022 4.022 6 C -0.085 4.085 7 C 0.000 4.000 8 C -0.196 4.196 9 C 0.489 3.511 10 O -0.500 6.500 11 O -0.323 6.323 12 C 0.052 3.948 13 C 0.505 3.495 14 O -0.520 6.520 15 N -0.598 5.598 16 C 0.079 3.921 17 C 0.246 3.754 18 C -0.527 4.527 19 H 0.058 0.942 20 C 0.060 3.940 21 N -0.894 5.894 22 Si 0.900 3.100 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.282 1.282 26 C -0.075 4.075 27 C -0.146 4.146 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.107 0.893 31 H 0.127 0.873 32 H 0.120 0.880 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.048 0.952 38 H 0.079 0.921 39 H 0.057 0.943 40 H 0.036 0.964 41 H 0.046 0.954 42 H 0.263 0.737 43 H 0.126 0.874 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.607 -9.178 14.490 30.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 S 0.124 5.876 3 C -0.183 4.183 4 C -0.131 4.131 5 C -0.042 4.042 6 C -0.088 4.088 7 C -0.019 4.019 8 C -0.215 4.215 9 C 0.336 3.664 10 O -0.391 6.391 11 O -0.238 6.238 12 C -0.026 4.026 13 C 0.290 3.710 14 O -0.396 6.396 15 N -0.332 5.332 16 C -0.065 4.065 17 C 0.127 3.873 18 C -0.566 4.566 19 H 0.077 0.923 20 C -0.142 4.142 21 N -0.533 5.533 22 Si 0.727 3.273 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.208 1.208 26 C -0.095 4.095 27 C -0.170 4.170 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.126 0.874 31 H 0.145 0.855 32 H 0.138 0.862 33 H 0.165 0.835 34 H 0.168 0.832 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.066 0.934 38 H 0.097 0.903 39 H 0.075 0.925 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.144 0.856 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -24.737 -9.907 14.427 30.302 hybrid contribution 0.124 0.694 0.160 0.723 sum -24.613 -9.213 14.588 30.058 Atomic orbital electron populations 1.23676 0.94909 1.07080 1.05689 1.85568 1.06274 1.03547 1.92171 1.21906 0.96705 0.96157 1.03489 1.20324 0.94128 0.96129 1.02545 1.20780 0.98387 0.92006 0.93018 1.18964 0.93623 0.92617 1.03583 1.22555 0.91798 0.93769 0.93760 1.21461 1.00204 1.02184 0.97605 1.20217 0.78376 0.85661 0.82106 1.90975 1.59619 1.21959 1.66597 1.86286 1.43697 1.47073 1.46735 1.22487 0.96664 0.92831 0.90656 1.19751 0.83721 0.86412 0.81123 1.90709 1.66248 1.19795 1.62818 1.48097 1.31905 1.17242 1.35943 1.21724 1.00392 0.84942 0.99467 1.19359 0.80766 0.95125 0.92030 1.21460 0.91056 1.31373 1.12728 0.92343 1.24944 0.99198 0.94900 0.95128 1.69941 1.25548 1.34186 1.23624 0.86419 0.82849 0.78334 0.79678 1.19789 1.20942 1.20822 1.20781 0.95080 0.95467 0.98191 1.20703 0.97957 0.93129 1.05192 0.89735 0.89672 0.87421 0.85519 0.86230 0.83523 0.83250 0.89021 0.89127 0.93352 0.90265 0.92474 0.94606 0.93633 0.92714 0.85610 0.85968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.76 9.14 101.05 0.92 0.16 16 2 S -0.12 -1.06 22.56 -107.50 -2.43 -3.48 16 3 C -0.07 -0.72 6.13 -38.76 -0.24 -0.96 16 4 C -0.11 -1.21 9.73 -39.77 -0.39 -1.60 16 5 C -0.02 -0.25 6.57 -39.49 -0.26 -0.51 16 6 C -0.09 -0.85 4.49 -105.03 -0.47 -1.33 16 7 C 0.00 0.00 9.79 -37.19 -0.36 -0.37 16 8 C -0.20 -1.98 9.86 -39.35 -0.39 -2.36 16 9 C 0.49 6.73 6.75 32.04 0.22 6.95 16 10 O -0.50 -7.36 11.77 -19.39 -0.23 -7.59 16 11 O -0.32 -5.39 9.64 -47.91 -0.46 -5.85 16 12 C 0.05 0.85 4.41 36.01 0.16 1.01 16 13 C 0.51 10.89 7.75 -10.99 -0.09 10.80 16 14 O -0.52 -13.58 16.08 -14.35 -0.23 -13.81 16 15 N -0.60 -12.83 2.86 -182.96 -0.52 -13.35 16 16 C 0.08 1.25 10.24 59.84 0.61 1.86 16 17 C 0.25 6.45 5.16 -5.19 -0.03 6.43 16 18 C -0.53 -15.01 9.39 -34.44 -0.32 -15.33 16 19 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 20 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -26.58 13.29 55.43 0.74 -25.85 16 22 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 C -0.08 -0.66 9.74 -39.49 -0.38 -1.05 16 27 C -0.15 -1.32 9.30 -39.78 -0.37 -1.69 16 28 H 0.08 0.37 7.74 -51.93 -0.40 -0.03 16 29 H 0.08 0.42 7.74 -51.92 -0.40 0.02 16 30 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.13 1.33 8.06 -52.48 -0.42 0.90 16 32 H 0.12 1.37 7.03 -52.48 -0.37 1.00 16 33 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 34 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.09 1.36 7.39 -51.93 -0.38 0.98 16 36 H 0.09 1.31 8.09 -51.93 -0.42 0.89 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.08 1.27 8.07 -51.93 -0.42 0.86 16 39 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 40 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 41 H 0.05 1.34 7.42 -51.93 -0.39 0.96 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 44 H 0.12 0.82 5.86 -52.48 -0.31 0.51 16 LS Contribution 389.45 15.07 5.87 5.87 Total: -1.00 -35.87 389.45 -9.69 -45.56 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -5.92 Total: -2.06 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -1.48 Total: 3.65 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.21 Total: -39.20 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -0.92 Total: -27.25 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: -1.06 SS G_CDS: -2.43 Total: -3.48 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.87 -9.69 -45.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006497462.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.993 kcal (2) G-P(sol) polarization free energy of solvation -35.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds