Wall clock time and date at job start Tue Mar 31 2020 06:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35697 * 116.99806 * 2 1 4 4 C 1.38668 * 120.15005 * 0.02562 * 3 2 1 5 5 C 1.38082 * 120.08812 * 180.02562 * 4 3 2 6 6 C 1.38537 * 120.38172 * 0.02562 * 5 4 3 7 7 C 1.37815 * 120.29342 * 359.97192 * 6 5 4 8 8 C 1.39671 * 119.90409 * 359.73249 * 7 6 5 9 9 C 1.47683 * 120.18650 * 180.29620 * 8 7 6 10 10 O 1.21862 * 119.99810 * 174.68167 * 9 8 7 11 11 C 1.41772 * 119.99546 * 354.67500 * 9 8 7 12 12 C 1.41823 * 126.82138 * 274.48580 * 11 9 8 13 13 C 1.50703 * 126.10471 * 0.03176 * 12 11 9 14 14 C 1.34445 * 107.78195 * 179.87167 * 12 11 9 15 15 C 1.50710 * 125.17165 * 180.13217 * 14 12 11 16 16 C 1.50693 * 109.46806 * 270.29526 * 15 14 12 17 17 H 1.07997 * 120.00562 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99910 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00187 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99877 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47278 * 90.00239 * 20 18 16 22 22 H 1.48502 * 109.47234 * 210.00316 * 20 18 16 23 23 H 1.48504 * 109.47197 * 330.00405 * 20 18 16 24 24 N 1.37053 * 109.65472 * 0.40939 * 14 12 11 25 25 C 1.36637 * 131.33093 * 179.76943 * 24 14 12 26 26 C 1.35088 * 120.74911 * 180.02562 * 25 24 14 27 27 C 1.40223 * 120.36197 * 359.94978 * 26 25 24 28 28 C 1.36448 * 119.43978 * 0.02789 * 27 26 25 29 29 C 1.36903 * 108.74988 * 359.73778 * 24 14 12 30 30 H 1.08999 * 109.47488 * 60.00170 * 1 2 3 31 31 H 1.09001 * 109.47370 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47128 * 300.00033 * 1 2 3 33 33 H 1.08006 * 119.95178 * 0.02562 * 4 3 2 34 34 H 1.08003 * 119.81063 * 179.97438 * 5 4 3 35 35 H 1.07997 * 119.85155 * 180.02562 * 6 5 4 36 36 H 1.08000 * 120.04587 * 180.02562 * 7 6 5 37 37 H 1.09001 * 109.47049 * 90.02065 * 13 12 11 38 38 H 1.09004 * 109.46460 * 210.02466 * 13 12 11 39 39 H 1.09001 * 109.47122 * 330.01860 * 13 12 11 40 40 H 1.08997 * 109.46581 * 30.29620 * 15 14 12 41 41 H 1.08997 * 109.46802 * 150.29436 * 15 14 12 42 42 H 0.96999 * 120.00056 * 179.97438 * 19 18 16 43 43 H 1.07998 * 119.62492 * 359.97438 * 25 24 14 44 44 H 1.07998 * 119.81630 * 179.97438 * 26 25 24 45 45 H 1.08005 * 120.28116 * 180.02562 * 27 26 25 46 46 H 1.07999 * 120.33957 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2091 0.0000 4 6 1.2927 2.3740 0.0005 5 6 1.9209 3.6037 0.0000 6 6 3.3039 3.6839 -0.0016 7 6 4.0669 2.5363 -0.0021 8 6 3.4441 1.2861 0.0047 9 6 4.2556 0.0522 0.0108 10 8 3.7125 -1.0337 0.1145 11 6 5.6665 0.1313 -0.1042 12 6 6.4188 0.2036 -1.3042 13 6 5.8597 0.2112 -2.7037 14 6 7.7195 0.2677 -0.9702 15 6 8.8633 0.3590 -1.9474 16 6 9.3196 -1.0286 -2.3176 17 1 8.8307 -1.8905 -1.8881 18 6 10.3620 -1.1980 -3.2040 19 7 10.7599 -2.4089 -3.5276 20 14 11.2081 0.2927 -3.9465 21 1 12.3407 0.7027 -3.0780 22 1 11.7196 -0.0503 -5.2978 23 1 10.2368 1.4109 -4.0540 24 7 7.8475 0.2311 0.3938 25 6 8.9518 0.2646 1.1978 26 6 8.8292 0.2147 2.5421 27 6 7.5617 0.1284 3.1356 28 6 6.4512 0.0947 2.3434 29 6 6.5997 0.1473 0.9508 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.2140 2.3194 0.0014 34 1 1.3306 4.5081 0.0000 35 1 3.7863 4.6502 -0.0016 36 1 5.1448 2.6035 -0.0029 37 1 5.6705 1.2389 -3.0138 38 1 6.5774 -0.2474 -3.3840 39 1 4.9270 -0.3525 -2.7255 40 1 8.5341 0.8846 -2.8437 41 1 9.6894 0.9032 -1.4898 42 1 11.4930 -2.5281 -4.1514 43 1 9.9339 0.3309 0.7533 44 1 9.7123 0.2418 3.1633 45 1 7.4652 0.0890 4.2106 46 1 5.4679 0.0288 2.7850 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006550076.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:18 Heat of formation + Delta-G solvation = 27.212128 kcal Electronic energy + Delta-G solvation = -30368.476174 eV Core-core repulsion = 26382.680996 eV Total energy + Delta-G solvation = -3985.795178 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 349.146 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.90791 -40.39205 -38.33285 -37.31670 -36.52557 -33.40521 -32.80620 -31.49302 -31.33743 -30.20994 -29.67927 -27.81505 -27.12797 -26.39010 -24.45699 -23.28193 -22.53463 -21.91069 -21.45730 -19.46607 -19.06368 -18.07241 -16.92250 -16.69164 -16.33750 -16.19051 -15.87065 -15.76328 -15.19731 -14.96689 -14.73337 -14.57461 -14.30814 -14.09608 -14.04116 -13.54874 -13.38155 -12.98225 -12.59233 -12.48685 -12.38000 -12.30985 -12.07801 -11.79457 -11.70909 -11.60275 -11.39794 -11.29044 -11.25631 -11.10500 -10.81269 -10.62561 -10.33079 -10.05259 -9.86428 -9.45285 -9.36291 -9.10471 -8.66386 -8.33495 -7.80272 -6.68449 -6.13709 -4.14547 0.75706 1.16197 1.31908 1.74151 2.60806 3.15191 3.16174 3.21086 3.29780 3.31289 3.32445 3.76764 3.84459 4.33266 4.40966 4.63479 4.82532 4.92424 4.92775 4.97278 5.05985 5.10009 5.16599 5.21543 5.28018 5.30444 5.32675 5.45606 5.54173 5.68797 5.79431 5.89079 6.00036 6.06312 6.17385 6.19239 6.22943 6.28541 6.32887 6.36224 6.46066 6.56425 6.62403 6.65315 6.76342 6.87753 7.01586 7.27316 7.33000 7.53983 7.60248 7.82800 7.97859 8.42916 8.92971 9.44685 10.98961 Molecular weight = 349.15amu Principal moments of inertia in cm(-1) A = 0.011878 B = 0.003407 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.636534 B = 8217.593780 C = 9033.832833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.285 6.285 3 C 0.176 3.824 4 C -0.229 4.229 5 C -0.055 4.055 6 C -0.175 4.175 7 C -0.021 4.021 8 C -0.188 4.188 9 C 0.487 3.513 10 O -0.437 6.437 11 C -0.261 4.261 12 C -0.081 4.081 13 C -0.085 4.085 14 C 0.040 3.960 15 C 0.049 3.951 16 C -0.518 4.518 17 H 0.074 0.926 18 C 0.073 3.927 19 N -0.894 5.894 20 Si 0.873 3.127 21 H -0.276 1.276 22 H -0.285 1.285 23 H -0.263 1.263 24 N -0.334 5.334 25 C 0.081 3.919 26 C -0.169 4.169 27 C -0.119 4.119 28 C -0.099 4.099 29 C 0.072 3.928 30 H 0.055 0.945 31 H 0.101 0.899 32 H 0.054 0.946 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.139 0.861 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.056 0.944 40 H 0.045 0.955 41 H 0.019 0.981 42 H 0.265 0.735 43 H 0.163 0.837 44 H 0.141 0.859 45 H 0.128 0.872 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.788 13.245 10.406 23.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.196 6.196 3 C 0.129 3.871 4 C -0.248 4.248 5 C -0.073 4.073 6 C -0.193 4.193 7 C -0.039 4.039 8 C -0.190 4.190 9 C 0.364 3.636 10 O -0.311 6.311 11 C -0.269 4.269 12 C -0.083 4.083 13 C -0.142 4.142 14 C -0.068 4.068 15 C 0.011 3.989 16 C -0.556 4.556 17 H 0.093 0.907 18 C -0.130 4.130 19 N -0.532 5.532 20 Si 0.700 3.300 21 H -0.202 1.202 22 H -0.210 1.210 23 H -0.188 1.188 24 N 0.003 4.997 25 C -0.041 4.041 26 C -0.189 4.189 27 C -0.140 4.140 28 C -0.118 4.118 29 C -0.034 4.034 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.073 0.927 33 H 0.148 0.852 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.156 0.844 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.075 0.925 40 H 0.063 0.937 41 H 0.037 0.963 42 H 0.075 0.925 43 H 0.181 0.819 44 H 0.159 0.841 45 H 0.146 0.854 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -15.625 12.350 10.361 22.450 hybrid contribution 0.404 0.803 -0.345 0.963 sum -15.220 13.153 10.016 22.472 Atomic orbital electron populations 1.23133 0.78907 1.04200 1.01052 1.86353 1.20686 1.25779 1.86820 1.19262 0.91396 0.84687 0.91746 1.21187 1.00060 0.92204 1.11348 1.21092 0.94765 0.96874 0.94544 1.21041 0.93742 0.98620 1.05932 1.21338 1.00713 0.90333 0.91510 1.20142 0.90512 0.96326 1.12013 1.18051 0.87000 0.87045 0.71519 1.90690 1.75211 1.30528 1.34706 1.18580 0.93198 1.22176 0.92935 1.19002 0.90795 1.04584 0.93968 1.20249 1.00771 1.01215 0.91970 1.20653 0.96889 1.09347 0.79900 1.18366 0.89617 0.98930 0.91994 1.20932 1.16973 0.90850 1.26815 0.90740 1.24974 0.96473 0.95645 0.95882 1.69895 1.27992 1.21004 1.34357 0.86878 0.80270 0.83740 0.79089 1.20208 1.21044 1.18762 1.41355 1.05392 1.46079 1.06843 1.21779 0.91434 0.99906 0.90959 1.20575 0.98642 1.06740 0.92959 1.20874 0.91901 1.01404 0.99796 1.20362 0.99670 1.01822 0.89952 1.18285 0.83825 1.08994 0.92256 0.92661 0.88055 0.92734 0.85184 0.85652 0.85483 0.84354 0.92058 0.89902 0.92480 0.93661 0.96306 0.92483 0.81927 0.84136 0.85357 0.85032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 101.05 0.99 1.19 16 2 O -0.29 -4.11 8.59 -40.59 -0.35 -4.46 16 3 C 0.18 2.46 6.70 -38.71 -0.26 2.20 16 4 C -0.23 -2.42 9.03 -39.48 -0.36 -2.77 16 5 C -0.05 -0.51 10.03 -39.53 -0.40 -0.91 16 6 C -0.18 -1.83 10.02 -39.63 -0.40 -2.23 16 7 C -0.02 -0.27 9.43 -39.20 -0.37 -0.64 16 8 C -0.19 -2.90 5.89 -104.80 -0.62 -3.51 16 9 C 0.49 9.06 6.43 -34.38 -0.22 8.84 16 10 O -0.44 -9.32 15.94 -16.75 -0.27 -9.59 16 11 C -0.26 -5.03 4.29 -106.19 -0.46 -5.49 16 12 C -0.08 -1.64 6.14 -104.59 -0.64 -2.28 16 13 C -0.08 -1.56 9.74 36.01 0.35 -1.21 16 14 C 0.04 0.86 6.10 -81.59 -0.50 0.36 16 15 C 0.05 1.12 3.91 -29.03 -0.11 1.00 16 16 C -0.52 -14.23 9.65 -34.44 -0.33 -14.56 16 17 H 0.07 2.32 7.98 -52.49 -0.42 1.91 16 18 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 19 N -0.89 -26.83 13.96 55.43 0.77 -26.06 16 20 Si 0.87 20.41 27.47 -169.99 -4.67 15.74 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 24 N -0.33 -6.49 2.92 -56.59 -0.17 -6.65 16 25 C 0.08 1.35 10.65 -16.53 -0.18 1.17 16 26 C -0.17 -2.30 9.98 -39.96 -0.40 -2.70 16 27 C -0.12 -1.58 10.09 -39.48 -0.40 -1.98 16 28 C -0.10 -1.54 10.04 -39.51 -0.40 -1.94 16 29 C 0.07 1.34 6.72 -83.89 -0.56 0.78 16 30 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 31 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.38 7.66 -51.93 -0.40 -0.01 16 33 H 0.13 1.02 6.30 -52.48 -0.33 0.69 16 34 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 35 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.14 1.86 7.17 -52.49 -0.38 1.48 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.08 1.63 7.68 -51.93 -0.40 1.23 16 39 H 0.06 1.02 8.02 -51.93 -0.42 0.60 16 40 H 0.05 1.02 6.72 -51.93 -0.35 0.67 16 41 H 0.02 0.41 7.23 -51.93 -0.38 0.04 16 42 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.16 2.57 7.79 -52.49 -0.41 2.16 16 44 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 45 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 46 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 388.85 15.07 5.86 5.86 Total: -1.00 -34.35 388.85 -10.16 -44.51 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -6.00 Total: 3.40 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -5.35 Total: -22.75 kcal Atomic # 7 Polarization: -33.32 SS G_CDS: 0.61 Total: -32.71 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.62 Total: -14.05 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.67 Total: 15.74 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.35 -10.16 -44.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006550076.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.722 kcal (2) G-P(sol) polarization free energy of solvation -34.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds