Wall clock time and date at job start Tue Mar 31 2020 05:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30642 * 1 3 3 Si 1.86797 * 120.00259 * 2 1 4 4 H 1.48498 * 109.47105 * 269.99787 * 3 2 1 5 5 H 1.48506 * 109.47112 * 29.99359 * 3 2 1 6 6 H 1.48501 * 109.47311 * 149.99408 * 3 2 1 7 7 C 1.40127 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00266 * 180.02562 * 7 2 1 9 9 C 1.46201 * 119.99866 * 0.02562 * 7 2 1 10 10 O 1.21722 * 119.99858 * 359.97438 * 9 7 2 11 11 N 1.34778 * 120.00040 * 179.97438 * 9 7 2 12 12 C 1.39092 * 119.99968 * 185.27991 * 11 9 7 13 13 C 1.39263 * 119.93744 * 213.62975 * 12 11 9 14 14 C 1.37622 * 120.06186 * 180.02562 * 13 12 11 15 15 C 1.39780 * 119.94180 * 359.97438 * 14 13 12 16 16 C 1.47599 * 120.06419 * 180.02562 * 15 14 13 17 17 O 1.21582 * 120.00025 * 0.02562 * 16 15 14 18 18 N 1.34778 * 119.99747 * 180.27453 * 16 15 14 19 19 N 1.40099 * 120.00066 * 179.72471 * 18 16 15 20 20 C 1.34773 * 120.00435 * 180.02562 * 19 18 16 21 21 S 1.71204 * 120.00231 * 180.02562 * 20 19 18 22 22 N 1.34775 * 119.99842 * 0.02562 * 20 19 18 23 23 C 1.46502 * 119.99998 * 180.02562 * 22 20 19 24 24 C 1.53005 * 117.49476 * 223.74175 * 23 22 20 25 25 C 1.53004 * 117.49694 * 155.08717 * 23 22 20 26 26 C 1.39784 * 119.87133 * 0.27597 * 15 14 13 27 27 C 1.37621 * 119.93559 * 359.45076 * 26 15 14 28 28 H 0.96995 * 119.99612 * 0.02562 * 1 2 3 29 29 H 0.96995 * 119.99608 * 5.27861 * 11 9 7 30 30 H 1.07997 * 119.96683 * 359.97438 * 13 12 11 31 31 H 1.08003 * 120.03321 * 179.97438 * 14 13 12 32 32 H 0.96999 * 120.00387 * 359.72697 * 18 16 15 33 33 H 0.96999 * 119.99547 * 0.02562 * 19 18 16 34 34 H 0.97009 * 120.00172 * 359.97438 * 22 20 19 35 35 H 1.08994 * 115.55248 * 9.41851 * 23 22 20 36 36 H 1.08995 * 117.49797 * 0.02562 * 24 23 22 37 37 H 1.09009 * 117.49238 * 145.02075 * 24 23 22 38 38 H 1.08999 * 117.49470 * 214.97668 * 25 23 22 39 39 H 1.08997 * 117.50293 * 359.97438 * 25 23 22 40 40 H 1.08003 * 120.02508 * 179.72549 * 26 15 14 41 41 H 1.08006 * 119.96689 * 180.25261 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.4880 2.0463 -1.4001 5 1 1.4379 2.6527 0.6999 6 1 3.5380 1.4401 0.7002 7 6 2.0071 -1.2135 0.0005 8 1 3.0871 -1.2136 0.0010 9 6 1.2760 -2.4797 0.0005 10 8 0.0588 -2.4796 0.0005 11 7 1.9499 -3.6469 0.0005 12 6 1.2588 -4.8489 -0.1103 13 6 1.7286 -5.9837 0.5461 14 6 1.0472 -7.1745 0.4377 15 6 -0.1178 -7.2441 -0.3316 16 6 -0.8511 -8.5196 -0.4492 17 8 -0.4422 -9.5110 0.1238 18 7 -1.9712 -8.5866 -1.1957 19 7 -2.6641 -9.7987 -1.3121 20 6 -3.7839 -9.8659 -2.0591 21 16 -4.6309 -11.3469 -2.2007 22 7 -4.2369 -8.7671 -2.6946 23 6 -5.4544 -8.8399 -3.5061 24 6 -5.4368 -8.1467 -4.8700 25 6 -6.2422 -7.5451 -3.7157 26 6 -0.5841 -6.1047 -0.9935 27 6 0.0983 -4.9152 -0.8771 28 1 -0.4849 0.8400 -0.0004 29 1 2.9168 -3.6486 0.0778 30 1 2.6290 -5.9295 1.1400 31 1 1.4121 -8.0544 0.9466 32 1 -2.2976 -7.7956 -1.6526 33 1 -2.3378 -10.5896 -0.8550 34 1 -3.7571 -7.9278 -2.6141 35 1 -6.0224 -9.7661 -3.4196 36 1 -4.5192 -7.6369 -5.1636 37 1 -5.9935 -8.6169 -5.6807 38 1 -7.3284 -7.6197 -3.7674 39 1 -5.8549 -6.6392 -3.2494 40 1 -1.4815 -6.1568 -1.5922 41 1 -0.2639 -4.0336 -1.3850 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006583758.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:20 Heat of formation + Delta-G solvation = 41.542600 kcal Electronic energy + Delta-G solvation = -26459.845829 eV Core-core repulsion = 22468.461243 eV Total energy + Delta-G solvation = -3991.384587 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.93363 -39.68144 -38.97922 -37.47100 -36.91310 -34.33491 -33.83830 -32.75596 -31.98750 -30.70556 -29.42459 -26.68270 -24.61005 -23.62670 -22.92161 -22.80114 -22.62090 -21.39975 -20.13484 -19.74065 -18.73536 -17.86423 -17.30138 -16.88829 -16.40441 -16.04580 -15.86382 -15.74440 -15.25437 -14.90916 -14.59016 -14.54460 -14.20860 -13.96292 -13.47634 -13.32020 -12.95077 -12.89424 -12.47578 -12.40338 -12.10233 -12.04111 -11.61564 -11.49796 -11.26784 -11.07216 -11.04445 -10.86016 -10.60790 -10.52037 -10.45487 -9.72666 -9.14550 -9.03975 -8.90002 -8.07853 -8.05411 -7.89955 -7.50870 -6.58518 -5.06722 0.76289 0.91633 1.03231 1.59656 1.80464 2.18442 2.66919 2.93174 3.00968 3.04002 3.36267 3.78108 3.81281 3.90290 4.18023 4.21833 4.26716 4.40042 4.43209 4.52101 4.79725 5.07772 5.13728 5.16081 5.35043 5.40766 5.45453 5.55388 5.58365 5.63881 5.75138 5.95042 6.13813 6.16077 6.41542 6.45984 6.63832 6.72575 6.83448 6.90829 7.07161 7.41519 7.68241 7.74775 7.87734 8.61619 8.87352 10.08353 10.31029 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.013530 B = 0.002161 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.054203 B =12952.914963 C =14808.862172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.085 3.915 3 Si 0.915 3.085 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.534 4.534 8 H 0.075 0.925 9 C 0.537 3.463 10 O -0.556 6.556 11 N -0.693 5.693 12 C 0.237 3.763 13 C -0.188 4.188 14 C -0.021 4.021 15 C -0.197 4.197 16 C 0.580 3.420 17 O -0.531 6.531 18 N -0.553 5.553 19 N -0.463 5.463 20 C 0.570 3.430 21 S -0.607 6.607 22 N -0.659 5.659 23 C 0.072 3.928 24 C -0.184 4.184 25 C -0.183 4.183 26 C -0.061 4.061 27 C -0.139 4.139 28 H 0.275 0.725 29 H 0.398 0.602 30 H 0.130 0.870 31 H 0.133 0.867 32 H 0.420 0.580 33 H 0.460 0.540 34 H 0.395 0.605 35 H 0.170 0.830 36 H 0.099 0.901 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.100 0.900 40 H 0.112 0.888 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.342 -10.002 -6.645 12.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.137 4.137 3 Si 0.739 3.261 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.569 4.569 8 H 0.093 0.907 9 C 0.345 3.655 10 O -0.438 6.438 11 N -0.334 5.334 12 C 0.135 3.865 13 C -0.210 4.210 14 C -0.041 4.041 15 C -0.203 4.203 16 C 0.371 3.629 17 O -0.406 6.406 18 N -0.305 5.305 19 N -0.191 5.191 20 C 0.209 3.791 21 S -0.482 6.482 22 N -0.289 5.289 23 C -0.034 4.034 24 C -0.222 4.222 25 C -0.222 4.222 26 C -0.081 4.081 27 C -0.160 4.160 28 H 0.085 0.915 29 H 0.233 0.767 30 H 0.147 0.853 31 H 0.151 0.849 32 H 0.263 0.737 33 H 0.310 0.690 34 H 0.232 0.768 35 H 0.187 0.813 36 H 0.117 0.883 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.118 0.882 40 H 0.130 0.870 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.592 -11.231 -6.352 14.063 hybrid contribution 1.584 2.243 0.163 2.751 sum -4.008 -8.988 -6.189 11.626 Atomic orbital electron populations 1.69961 1.07230 1.28195 1.32913 1.25768 0.94774 1.00713 0.92405 0.86231 0.80147 0.80562 0.79150 1.19431 1.20147 1.18649 1.20884 0.93978 0.88802 1.53257 0.90727 1.18477 0.87549 0.81993 0.77502 1.90645 1.13573 1.85828 1.53770 1.44361 1.10205 1.04477 1.74365 1.18277 0.92142 0.86578 0.89526 1.20912 1.03680 0.92683 1.03722 1.20820 0.91729 0.97442 0.94098 1.19090 1.00340 0.91472 1.09415 1.18601 0.77818 0.89643 0.76816 1.90807 1.66684 1.37003 1.46108 1.45532 1.26493 1.03770 1.54713 1.44749 1.20834 1.05346 1.48211 1.22409 0.83103 0.92783 0.80827 1.93639 1.60541 1.13318 1.80702 1.44268 1.27470 1.09419 1.47766 1.22356 0.87023 1.00483 0.93495 1.23486 1.02785 1.03561 0.92411 1.23484 1.00070 0.96527 1.02075 1.20917 0.98020 0.91997 0.97161 1.21263 0.96603 0.98096 1.00005 0.91462 0.76738 0.85251 0.84913 0.73747 0.68977 0.76804 0.81316 0.88304 0.87113 0.86983 0.88171 0.86982 0.83459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.17 11.83 55.55 0.66 -19.51 16 2 C 0.09 2.11 5.50 -17.35 -0.10 2.02 16 3 Si 0.92 17.94 29.56 -169.99 -5.02 12.91 16 4 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 6 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 7 C -0.53 -13.18 9.54 -35.68 -0.34 -13.52 16 8 H 0.07 1.66 7.85 -52.49 -0.41 1.25 16 9 C 0.54 13.22 7.46 -13.06 -0.10 13.12 16 10 O -0.56 -15.49 12.69 5.17 0.07 -15.43 16 11 N -0.69 -13.32 5.30 -11.18 -0.06 -13.37 16 12 C 0.24 4.13 6.27 -83.81 -0.53 3.61 16 13 C -0.19 -2.71 9.94 -39.43 -0.39 -3.10 16 14 C -0.02 -0.29 9.58 -39.23 -0.38 -0.66 16 15 C -0.20 -2.62 5.88 -104.92 -0.62 -3.24 16 16 C 0.58 7.39 7.88 -12.44 -0.10 7.29 16 17 O -0.53 -8.14 16.17 5.29 0.09 -8.05 16 18 N -0.55 -5.39 6.21 30.47 0.19 -5.20 16 19 N -0.46 -4.77 6.26 29.96 0.19 -4.58 16 20 C 0.57 5.99 7.97 -86.92 -0.69 5.29 16 21 S -0.61 -8.48 28.67 -107.50 -3.08 -11.56 16 22 N -0.66 -5.12 5.53 -55.52 -0.31 -5.43 16 23 C 0.07 0.53 6.26 -67.92 -0.43 0.10 16 24 C -0.18 -1.03 10.46 -26.69 -0.28 -1.31 16 25 C -0.18 -1.00 10.46 -26.69 -0.28 -1.28 16 26 C -0.06 -0.81 9.53 -39.23 -0.37 -1.18 16 27 C -0.14 -2.38 8.62 -39.43 -0.34 -2.72 16 28 H 0.27 6.64 8.29 -40.82 -0.34 6.30 16 29 H 0.40 6.39 8.79 -40.82 -0.36 6.03 16 30 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 31 H 0.13 1.66 7.64 -52.48 -0.40 1.26 16 32 H 0.42 3.03 4.72 -182.60 -0.86 2.17 16 33 H 0.46 5.09 7.98 -182.60 -1.46 3.63 16 34 H 0.39 2.26 6.75 -40.82 -0.28 1.99 16 35 H 0.17 1.49 6.43 -51.93 -0.33 1.16 16 36 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.11 0.53 8.14 -51.92 -0.42 0.11 16 38 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.11 1.05 6.39 -52.48 -0.34 0.71 16 41 H 0.15 2.92 6.41 -52.48 -0.34 2.59 16 LS Contribution 370.77 15.07 5.59 5.59 Total: -1.00 -33.25 370.77 -12.65 -45.90 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -6.02 Total: 14.32 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -4.93 Total: 4.42 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: 0.67 Total: -48.10 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: 0.15 Total: -23.48 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.02 Total: 12.91 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -3.08 Total: -11.56 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.25 -12.65 -45.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006583758.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.446 kcal (2) G-P(sol) polarization free energy of solvation -33.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds