Wall clock time and date at job start Tue Mar 31 2020 06:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39630 * 120.14770 * 260.27870 * 3 2 1 5 5 C 1.37951 * 119.84583 * 179.72112 * 4 3 2 6 6 C 1.38365 * 120.14849 * 0.57629 * 5 4 3 7 7 C 1.50696 * 119.84922 * 179.69598 * 6 5 4 8 8 S 1.81007 * 109.47423 * 269.98214 * 7 6 5 9 9 C 1.76198 * 100.00030 * 179.97438 * 8 7 6 10 10 N 1.31052 * 125.07698 * 0.02759 * 9 8 7 11 11 C 1.35884 * 109.61715 * 179.97438 * 10 9 8 12 12 C 1.39723 * 133.37170 * 179.97438 * 11 10 9 13 13 C 1.37697 * 119.77357 * 180.02562 * 12 11 10 14 14 C 1.38701 * 120.49560 * 359.97438 * 13 12 11 15 15 C 1.37968 * 120.43282 * 0.03903 * 14 13 12 16 16 C 1.38655 * 119.85634 * 359.96428 * 15 14 13 17 17 N 1.36631 * 125.07634 * 179.72046 * 9 8 7 18 18 C 1.46504 * 126.38468 * 359.97438 * 17 9 8 19 19 C 1.50691 * 109.47085 * 90.02361 * 18 17 9 20 20 H 1.08000 * 120.00221 * 359.97438 * 19 18 17 21 21 C 1.37882 * 120.00005 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00078 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 119.99671 * 0.02562 * 21 19 18 24 24 H 1.48493 * 109.47344 * 89.99820 * 23 21 19 25 25 H 1.48508 * 109.46709 * 209.99739 * 23 21 19 26 26 H 1.48498 * 109.47161 * 329.99234 * 23 21 19 27 27 C 1.38365 * 120.30591 * 359.68019 * 6 5 4 28 28 C 1.37947 * 120.14939 * 0.03939 * 27 6 5 29 29 H 1.07999 * 120.08232 * 359.97438 * 4 3 2 30 30 H 1.08002 * 119.92831 * 180.25347 * 5 4 3 31 31 H 1.09004 * 109.46985 * 29.98169 * 7 6 5 32 32 H 1.08995 * 109.47261 * 149.97946 * 7 6 5 33 33 H 1.07997 * 120.11262 * 359.97438 * 12 11 10 34 34 H 1.07996 * 119.74683 * 180.02562 * 13 12 11 35 35 H 1.07999 * 119.78243 * 180.02562 * 14 13 12 36 36 H 1.08009 * 120.07438 * 179.97438 * 15 14 13 37 37 H 1.09000 * 109.47133 * 210.02490 * 18 17 9 38 38 H 1.08999 * 109.46868 * 330.02426 * 18 17 9 39 39 H 0.96991 * 120.00037 * 179.97438 * 22 21 19 40 40 H 1.07993 * 119.92704 * 180.02562 * 27 6 5 41 41 H 1.08003 * 120.07687 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 0.2048 1.1901 5 6 4.6486 0.1985 1.1839 6 6 5.3374 0.0023 0.0000 7 6 6.8443 0.0034 -0.0001 8 16 7.4464 1.6873 -0.2804 9 6 9.1846 1.4027 -0.2322 10 7 9.7519 0.2373 -0.0382 11 6 11.1032 0.3782 -0.0614 12 6 12.1641 -0.5186 0.0885 13 6 13.4610 -0.0623 0.0131 14 6 13.7225 1.2813 -0.2110 15 6 12.6860 2.1795 -0.3608 16 6 11.3738 1.7376 -0.2878 17 7 10.1424 2.3630 -0.3973 18 6 9.9104 3.7886 -0.6424 19 6 9.8315 4.5183 0.6737 20 1 9.9425 3.9744 1.6002 21 6 9.6175 5.8802 0.6952 22 7 9.5480 6.5169 1.8438 23 14 9.4247 6.8207 -0.9072 24 1 7.9912 6.8520 -1.2935 25 1 9.9198 8.2094 -0.7287 26 1 10.2101 6.1484 -1.9733 27 6 4.6489 -0.1954 -1.1838 28 6 3.2694 -0.1972 -1.1910 29 1 2.7328 0.3633 2.1140 30 1 5.1923 0.3522 2.1044 31 1 7.2080 -0.3569 0.9622 32 1 7.2081 -0.6493 -0.7935 33 1 11.9676 -1.5660 0.2636 34 1 14.2807 -0.7559 0.1286 35 1 14.7442 1.6267 -0.2684 36 1 12.8963 3.2246 -0.5347 37 1 10.7314 4.1939 -1.2339 38 1 8.9739 3.9162 -1.1854 39 1 9.3979 7.4750 1.8589 40 1 5.1926 -0.3483 -2.1042 41 1 2.7332 -0.3511 -2.1158 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006657524.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:25 Heat of formation + Delta-G solvation = 123.543587 kcal Electronic energy + Delta-G solvation = -25641.056724 eV Core-core repulsion = 21998.651319 eV Total energy + Delta-G solvation = -3642.405405 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 349.094 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.42653 -39.82124 -36.83517 -36.78462 -34.29415 -33.23183 -32.42379 -31.42005 -30.08856 -29.10217 -27.93088 -27.75095 -23.43269 -23.12552 -23.10398 -22.48280 -21.54345 -20.06001 -19.21812 -17.31788 -17.26593 -16.67878 -16.12100 -15.99615 -15.67679 -15.09054 -14.98086 -14.79989 -14.28815 -14.25793 -13.88122 -13.72630 -13.60723 -13.56428 -13.38051 -13.16904 -12.72532 -12.68667 -12.36209 -12.30319 -11.83434 -11.79076 -11.62737 -11.42620 -11.32197 -11.02058 -10.88542 -10.57876 -10.53490 -9.91938 -9.61226 -9.48747 -9.34955 -9.00203 -8.88870 -8.69352 -7.60925 -7.12798 -6.36677 -4.41866 0.28153 1.03266 1.29739 1.48182 1.96299 2.20075 2.39047 2.76317 3.07242 3.09743 3.13112 3.15872 3.48816 3.57790 3.62175 4.11947 4.27119 4.34043 4.46847 4.56376 4.81987 4.90739 4.97131 5.00936 5.27462 5.28188 5.35859 5.36920 5.64655 5.67182 5.67395 5.73862 5.83979 5.86936 5.96776 6.01254 6.19845 6.21588 6.27757 6.46585 6.60013 6.84788 6.91513 7.04050 7.13388 7.19802 7.23184 7.51427 8.12133 8.18616 8.66518 9.17672 10.75355 Molecular weight = 349.09amu Principal moments of inertia in cm(-1) A = 0.009043 B = 0.003152 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3095.628307 B = 8880.320104 C =11328.069769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C 0.258 3.742 3 C -0.031 4.031 4 C -0.067 4.067 5 C -0.100 4.100 6 C -0.041 4.041 7 C -0.080 4.080 8 S 0.027 5.973 9 C 0.261 3.739 10 N -0.515 5.515 11 C 0.052 3.948 12 C -0.077 4.077 13 C -0.133 4.133 14 C -0.119 4.119 15 C -0.093 4.093 16 C 0.063 3.937 17 N -0.438 5.438 18 C 0.209 3.791 19 C -0.545 4.545 20 H 0.082 0.918 21 C 0.085 3.915 22 N -0.880 5.880 23 Si 0.868 3.132 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.265 1.265 27 C -0.103 4.103 28 C -0.069 4.069 29 H 0.136 0.864 30 H 0.141 0.859 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.047 0.953 38 H 0.045 0.955 39 H 0.270 0.730 40 H 0.138 0.862 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.294 -13.573 -5.697 15.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.097 5.097 2 C -0.058 4.058 3 C -0.035 4.035 4 C -0.088 4.088 5 C -0.119 4.119 6 C -0.044 4.044 7 C -0.228 4.228 8 S 0.262 5.738 9 C -0.113 4.113 10 N -0.241 5.241 11 C -0.071 4.071 12 C -0.097 4.097 13 C -0.154 4.154 14 C -0.139 4.139 15 C -0.114 4.114 16 C -0.050 4.050 17 N -0.124 5.124 18 C 0.090 3.910 19 C -0.583 4.583 20 H 0.100 0.900 21 C -0.121 4.121 22 N -0.516 5.516 23 Si 0.693 3.307 24 H -0.193 1.193 25 H -0.203 1.203 26 H -0.189 1.189 27 C -0.123 4.123 28 C -0.090 4.090 29 H 0.153 0.847 30 H 0.159 0.841 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.156 0.844 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.148 -12.909 -5.686 15.387 hybrid contribution 1.558 0.509 -0.548 1.728 sum -4.590 -12.400 -6.234 14.618 Atomic orbital electron populations 1.81256 1.12125 1.08938 1.07379 1.25738 0.92683 0.93610 0.93727 1.16038 0.84234 1.07707 0.95534 1.21177 0.94093 0.96713 0.96818 1.21115 0.93539 0.98763 0.98523 1.19590 0.93517 0.97399 0.93881 1.22532 0.93454 0.98458 1.08379 1.86143 0.87976 1.09254 1.90471 1.25134 0.97025 0.86661 1.02460 1.70864 1.05663 1.21333 1.26212 1.19016 0.90903 0.91899 1.05234 1.20085 0.90103 0.98149 1.01388 1.20748 0.95693 0.95693 1.03240 1.20761 0.98011 0.93015 1.02132 1.20051 0.88871 1.00131 1.02301 1.18949 0.87561 0.92968 1.05509 1.45556 1.02889 1.09467 1.54528 1.20166 0.98153 0.73314 0.99390 1.21059 1.52635 0.93204 0.91440 0.89985 1.24772 0.93889 0.97025 0.96379 1.69857 1.47257 1.09637 1.24857 0.86976 0.79552 0.80250 0.83880 1.19292 1.20334 1.18947 1.21049 0.93515 0.99600 0.98113 1.21139 0.94056 0.97122 0.96677 0.84650 0.84141 0.87222 0.87433 0.86075 0.86011 0.85840 0.85855 0.93475 0.93702 0.91964 0.84380 0.84763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.28 18.54 41.83 0.78 -4.50 16 2 C 0.26 2.63 15.33 -22.47 -0.34 2.28 16 3 C -0.03 -0.26 5.73 -106.93 -0.61 -0.87 16 4 C -0.07 -0.54 9.76 -39.17 -0.38 -0.92 16 5 C -0.10 -0.87 9.68 -39.64 -0.38 -1.25 16 6 C -0.04 -0.39 5.14 -104.53 -0.54 -0.92 16 7 C -0.08 -0.91 5.27 36.00 0.19 -0.72 16 8 S 0.03 0.43 21.53 -107.50 -2.31 -1.88 16 9 C 0.26 5.09 7.93 -88.45 -0.70 4.39 16 10 N -0.51 -9.84 10.57 -10.90 -0.12 -9.96 16 11 C 0.05 0.99 7.22 -84.68 -0.61 0.38 16 12 C -0.08 -1.20 10.10 -39.22 -0.40 -1.60 16 13 C -0.13 -1.83 10.01 -39.61 -0.40 -2.22 16 14 C -0.12 -1.73 10.03 -39.51 -0.40 -2.12 16 15 C -0.09 -1.65 10.04 -39.53 -0.40 -2.05 16 16 C 0.06 1.28 6.87 -83.84 -0.58 0.70 16 17 N -0.44 -9.38 2.82 -115.61 -0.33 -9.70 16 18 C 0.21 4.73 4.76 -5.20 -0.02 4.70 16 19 C -0.55 -14.44 9.94 -34.44 -0.34 -14.78 16 20 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 21 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 22 N -0.88 -25.12 13.96 55.43 0.77 -24.35 16 23 Si 0.87 19.35 27.47 -169.99 -4.67 14.68 16 24 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 26 H -0.26 -5.59 6.54 56.52 0.37 -5.22 16 27 C -0.10 -0.83 9.68 -39.64 -0.38 -1.21 16 28 C -0.07 -0.52 9.76 -39.17 -0.38 -0.90 16 29 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 30 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.11 1.27 8.08 -51.91 -0.42 0.85 16 32 H 0.11 1.16 8.08 -51.92 -0.42 0.74 16 33 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 34 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 36 H 0.12 2.15 8.06 -52.48 -0.42 1.72 16 37 H 0.05 1.04 7.20 -51.93 -0.37 0.67 16 38 H 0.05 0.98 7.11 -51.93 -0.37 0.61 16 39 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 LS Contribution 379.66 15.07 5.72 5.72 Total: -1.00 -31.48 379.66 -11.48 -42.97 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -4.55 Total: 2.00 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -6.78 Total: -14.97 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: 1.11 Total: -48.51 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.67 Total: 14.68 kcal Atomic # 16 Polarization: 0.43 SS G_CDS: -2.31 Total: -1.88 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.48 -11.48 -42.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006657524.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.509 kcal (2) G-P(sol) polarization free energy of solvation -31.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds