Wall clock time and date at job start Tue Mar 31 2020 06:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46501 * 109.47022 * 2 1 4 4 C 1.33790 * 120.24147 * 90.02440 * 3 2 1 5 5 O 1.21625 * 126.55542 * 359.97438 * 4 3 2 6 6 S 1.77230 * 106.89031 * 179.73975 * 4 3 2 7 7 C 1.77491 * 94.57041 * 0.25867 * 6 4 3 8 8 C 1.35782 * 127.96605 * 180.02562 * 7 6 4 9 9 C 1.46778 * 120.00178 * 352.60702 * 8 7 6 10 10 C 1.40118 * 120.08566 * 337.94236 * 9 8 7 11 11 C 1.37625 * 119.98963 * 179.73763 * 10 9 8 12 12 C 1.39079 * 120.16897 * 0.54045 * 11 10 9 13 13 O 1.35617 * 119.91179 * 179.71527 * 12 11 10 14 14 C 1.34754 * 117.00138 * 6.05564 * 13 12 11 15 15 H 1.08003 * 119.99572 * 354.90403 * 14 13 12 16 16 C 1.38681 * 119.99994 * 174.89221 * 14 13 12 17 17 N 1.31526 * 120.00214 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00057 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46995 * 89.99922 * 18 16 14 20 20 H 1.48500 * 109.47125 * 210.00156 * 18 16 14 21 21 H 1.48503 * 109.46982 * 330.00511 * 18 16 14 22 22 C 1.39641 * 120.17286 * 359.73649 * 12 11 10 23 23 O 1.35956 * 119.99371 * 180.02562 * 22 12 11 24 24 C 1.42899 * 116.99689 * 179.97438 * 23 22 12 25 25 C 1.38056 * 120.00659 * 359.97438 * 22 12 11 26 26 C 1.32266 * 120.23883 * 270.27748 * 3 2 1 27 27 O 1.21705 * 122.52256 * 0.03697 * 26 3 2 28 28 H 1.08993 * 109.47286 * 300.00232 * 1 2 3 29 29 H 1.09000 * 109.46985 * 60.00419 * 1 2 3 30 30 H 1.08996 * 109.46565 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47054 * 239.99436 * 2 1 3 32 32 H 1.09000 * 109.46985 * 119.99581 * 2 1 3 33 33 H 1.08001 * 120.00330 * 172.60634 * 8 7 6 34 34 H 1.07996 * 120.00310 * 0.02562 * 10 9 8 35 35 H 1.08004 * 119.91404 * 180.29769 * 11 10 9 36 36 H 0.97001 * 120.00495 * 180.02562 * 17 16 14 37 37 H 1.08998 * 109.47177 * 60.00219 * 24 23 22 38 38 H 1.08997 * 109.47078 * 179.97438 * 24 23 22 39 39 H 1.08999 * 109.47448 * 299.99918 * 24 23 22 40 40 H 1.08001 * 120.07734 * 180.02562 * 25 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2434 2.0164 1.1558 5 8 2.0838 1.5646 2.2737 6 16 2.8253 3.6396 0.7466 7 6 2.7296 3.3861 -1.0075 8 6 3.0421 4.2625 -1.9965 9 6 3.3699 5.6547 -1.6669 10 6 2.9335 6.2116 -0.4574 11 6 3.2465 7.5156 -0.1479 12 6 3.9861 8.2870 -1.0380 13 8 4.2867 9.5731 -0.7303 14 6 3.9491 10.0024 0.5016 15 1 3.3890 9.3582 1.1632 16 6 4.3210 11.2712 0.9199 17 7 5.0028 12.0559 0.1140 18 14 3.8536 11.8661 2.6279 19 1 4.9270 11.5052 3.5886 20 1 3.6818 13.3410 2.6086 21 1 2.5806 11.2247 3.0443 22 6 4.4196 7.7408 -2.2478 23 8 5.1429 8.4980 -3.1150 24 6 5.5539 7.8747 -4.3335 25 6 4.1148 6.4317 -2.5630 26 6 2.2352 2.0111 -1.1427 27 8 2.0440 1.4879 -2.2247 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.0496 3.9352 -3.0257 34 1 2.3555 5.6163 0.2338 35 1 2.9136 7.9421 0.7868 36 1 5.2633 12.9432 0.4067 37 1 4.6747 7.5507 -4.8904 38 1 6.1209 8.5871 -4.9327 39 1 6.1791 7.0111 -4.1070 40 1 4.4499 6.0080 -3.4982 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006950842.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:10 Heat of formation + Delta-G solvation = -65.926376 kcal Electronic energy + Delta-G solvation = -27299.759499 eV Core-core repulsion = 23173.703294 eV Total energy + Delta-G solvation = -4126.056204 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 349.086 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.59580 -39.91796 -38.75472 -37.89046 -36.81579 -35.93627 -33.61236 -32.69347 -31.85830 -29.92482 -28.85973 -26.88769 -25.92825 -25.11430 -24.85772 -22.76161 -21.94402 -21.02773 -19.58004 -18.82676 -18.42307 -17.72474 -17.38266 -16.73193 -16.26363 -15.71550 -15.61083 -15.38205 -15.32954 -14.82539 -14.46662 -14.24757 -14.20937 -14.12818 -13.81268 -13.73610 -13.39838 -13.20359 -12.60670 -12.54002 -12.07960 -11.99193 -11.94592 -11.49635 -11.46666 -11.45421 -11.27572 -11.05644 -10.94199 -10.65180 -10.52825 -10.35618 -10.05840 -9.87570 -9.69493 -9.17073 -8.39800 -8.00470 -7.08170 -6.83299 -4.29457 0.27137 0.85501 1.50596 1.69011 1.99279 2.30167 2.63096 2.90409 2.96697 3.00567 3.02780 3.68641 3.78915 4.10051 4.22162 4.66795 4.70150 4.78887 4.81413 4.87260 5.04582 5.12501 5.24238 5.37870 5.43243 5.45709 5.48042 5.53763 5.64115 5.73018 5.76246 5.83767 6.02523 6.10037 6.28274 6.55269 6.61753 6.76852 6.86614 6.89043 7.01681 7.27170 7.47065 7.57540 7.90850 8.58834 9.24601 10.30905 Molecular weight = 349.09amu Principal moments of inertia in cm(-1) A = 0.013120 B = 0.002888 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.584087 B = 9691.455909 C =11576.829609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.094 3.906 3 N -0.571 5.571 4 C 0.507 3.493 5 O -0.452 6.452 6 S 0.002 5.998 7 C -0.300 4.300 8 C 0.123 3.877 9 C -0.191 4.191 10 C -0.046 4.046 11 C -0.223 4.223 12 C 0.153 3.847 13 O -0.133 6.133 14 C -0.384 4.384 15 H 0.103 0.897 16 C 0.042 3.958 17 N -0.833 5.833 18 Si 0.948 3.052 19 H -0.268 1.268 20 H -0.274 1.274 21 H -0.262 1.262 22 C 0.056 3.944 23 O -0.302 6.302 24 C 0.029 3.971 25 C -0.127 4.127 26 C 0.566 3.434 27 O -0.493 6.493 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.146 0.854 34 H 0.127 0.873 35 H 0.142 0.858 36 H 0.279 0.721 37 H 0.048 0.952 38 H 0.093 0.907 39 H 0.048 0.952 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.795 -14.756 -3.101 15.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.030 4.030 3 N -0.316 5.316 4 C 0.190 3.810 5 O -0.327 6.327 6 S 0.240 5.760 7 C -0.415 4.415 8 C 0.097 3.903 9 C -0.193 4.193 10 C -0.066 4.066 11 C -0.242 4.242 12 C 0.093 3.907 13 O -0.032 6.032 14 C -0.459 4.459 15 H 0.121 0.879 16 C -0.166 4.166 17 N -0.463 5.463 18 Si 0.771 3.229 19 H -0.193 1.193 20 H -0.198 1.198 21 H -0.186 1.186 22 C 0.010 3.990 23 O -0.216 6.216 24 C -0.067 4.067 25 C -0.147 4.147 26 C 0.357 3.643 27 O -0.369 6.369 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.163 0.837 34 H 0.144 0.856 35 H 0.159 0.841 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.111 0.889 39 H 0.067 0.933 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.332 -13.636 -2.343 14.231 hybrid contribution -0.646 -1.053 -0.105 1.240 sum -3.977 -14.689 -2.447 15.414 Atomic orbital electron populations 1.22083 0.94297 1.03180 1.02898 1.21825 0.95942 0.80388 1.04855 1.46439 1.60510 1.16698 1.07997 1.23112 0.79976 0.92210 0.85691 1.90864 1.51270 1.69836 1.20764 1.86708 1.78007 1.10511 1.00804 1.23108 1.24453 0.97721 0.96239 1.21814 0.81562 0.89826 0.97084 1.18025 1.10729 0.92524 0.98004 1.21154 0.96635 0.94697 0.94146 1.20784 1.06429 0.94822 1.02186 1.18918 0.94656 0.85581 0.91504 1.83966 1.66438 1.19803 1.32944 1.21695 1.35216 1.00242 0.88742 0.87943 1.25518 0.95645 0.94959 1.00517 1.70042 1.31566 1.08778 1.35880 0.85586 0.79582 0.78527 0.79190 1.19306 1.19849 1.18590 1.17998 0.99786 0.90305 0.90862 1.86246 1.68150 1.38686 1.28533 1.22943 0.99201 0.99048 0.85466 1.20793 1.01801 0.92265 0.99805 1.17515 0.77165 0.86269 0.83320 1.90841 1.50251 1.69744 1.26060 0.92000 0.91811 0.90536 0.88456 0.88754 0.83653 0.85569 0.84098 0.91131 0.93319 0.88852 0.93308 0.85470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 10.24 37.16 0.38 -1.14 16 2 C 0.09 0.97 5.98 -4.04 -0.02 0.94 16 3 N -0.57 -7.44 2.48 -121.07 -0.30 -7.74 16 4 C 0.51 7.19 8.40 53.62 0.45 7.64 16 5 O -0.45 -7.14 17.38 5.26 0.09 -7.04 16 6 S 0.00 0.03 19.07 -107.50 -2.05 -2.02 16 7 C -0.30 -4.18 6.33 -37.03 -0.23 -4.41 16 8 C 0.12 1.64 9.81 -37.01 -0.36 1.27 16 9 C -0.19 -2.99 5.79 -105.06 -0.61 -3.59 16 10 C -0.05 -0.77 8.59 -39.10 -0.34 -1.11 16 11 C -0.22 -4.33 9.14 -39.49 -0.36 -4.69 16 12 C 0.15 3.37 6.67 -38.75 -0.26 3.11 16 13 O -0.13 -3.48 9.52 -13.94 -0.13 -3.61 16 14 C -0.38 -9.67 9.48 30.90 0.29 -9.38 16 15 H 0.10 2.33 5.19 -52.48 -0.27 2.05 16 16 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 17 N -0.83 -22.32 13.67 55.48 0.76 -21.57 16 18 Si 0.95 18.49 29.55 -169.99 -5.02 13.47 16 19 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 20 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 21 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 22 C 0.06 1.09 6.70 -39.12 -0.26 0.83 16 23 O -0.30 -5.89 10.28 -34.22 -0.35 -6.24 16 24 C 0.03 0.38 9.81 101.05 0.99 1.37 16 25 C -0.13 -2.01 8.78 -38.97 -0.34 -2.36 16 26 C 0.57 7.95 7.61 -13.93 -0.11 7.84 16 27 O -0.49 -7.59 16.85 5.18 0.09 -7.50 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.10 0.94 7.51 -51.93 -0.39 0.55 16 32 H 0.09 0.89 7.69 -51.93 -0.40 0.49 16 33 H 0.15 1.61 8.06 -52.49 -0.42 1.18 16 34 H 0.13 1.96 4.71 -29.86 -0.14 1.82 16 35 H 0.14 2.68 5.62 -52.48 -0.29 2.38 16 36 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 37 H 0.05 0.54 7.66 -51.93 -0.40 0.15 16 38 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 0.55 7.66 -51.93 -0.40 0.16 16 40 H 0.13 1.60 6.28 -52.49 -0.33 1.27 16 LS Contribution 360.20 15.07 5.43 5.43 Total: -1.00 -29.78 360.20 -6.24 -36.02 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -3.87 Total: 3.54 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -0.88 Total: -2.72 kcal Atomic # 7 Polarization: -29.77 SS G_CDS: 0.46 Total: -29.31 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.31 Total: -24.40 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.02 Total: 13.47 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -2.05 Total: -2.02 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.78 -6.24 -36.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006950842.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.909 kcal (2) G-P(sol) polarization free energy of solvation -29.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds