Wall clock time and date at job start Tue Mar 31 2020 05:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47224 * 2 1 4 4 N 1.30382 * 126.34841 * 270.00681 * 3 2 1 5 5 N 1.28505 * 110.15808 * 179.97438 * 4 3 2 6 6 C 1.31346 * 109.92932 * 359.97438 * 5 4 3 7 7 S 1.76194 * 126.51131 * 180.02562 * 6 5 4 8 8 N 1.36905 * 106.98271 * 359.97438 * 6 5 4 9 9 N 1.40091 * 127.18322 * 179.73969 * 8 6 5 10 10 C 1.29817 * 120.00037 * 90.03001 * 9 8 6 11 11 C 1.47352 * 119.99964 * 180.02562 * 10 9 8 12 12 C 1.39823 * 120.06778 * 359.97438 * 11 10 9 13 13 C 1.37752 * 120.01849 * 180.02562 * 12 11 10 14 14 C 1.38967 * 120.14640 * 359.97438 * 13 12 11 15 15 O 1.35682 * 119.93767 * 180.02562 * 14 13 12 16 16 C 1.34783 * 117.00281 * 354.38655 * 15 14 13 17 17 H 1.08000 * 119.99706 * 5.06384 * 16 15 14 18 18 C 1.38638 * 120.00284 * 185.06596 * 16 15 14 19 19 N 1.31561 * 120.00053 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99868 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47120 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.46964 * 120.00050 * 20 18 16 23 23 H 1.48497 * 109.47035 * 239.99473 * 20 18 16 24 24 C 1.39544 * 120.12834 * 0.02562 * 14 13 12 25 25 O 1.35952 * 120.00878 * 180.02562 * 24 14 13 26 26 C 1.42901 * 116.99930 * 179.97438 * 25 24 14 27 27 C 1.38185 * 119.98150 * 359.72477 * 24 14 13 28 28 H 1.08993 * 109.47683 * 60.00027 * 1 2 3 29 29 H 1.08998 * 109.46964 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46966 * 299.99831 * 1 2 3 31 31 H 1.09000 * 109.46966 * 240.00169 * 2 1 3 32 32 H 1.09005 * 109.47346 * 119.99891 * 2 1 3 33 33 H 1.41007 * 99.99970 * 269.99413 * 7 6 5 34 34 H 1.08002 * 119.99907 * 359.97438 * 10 9 8 35 35 H 1.08005 * 119.99221 * 359.97438 * 12 11 10 36 36 H 1.08002 * 119.93108 * 180.02562 * 13 12 11 37 37 H 0.96998 * 119.99960 * 180.02562 * 19 18 16 38 38 H 1.08991 * 109.47105 * 300.00389 * 26 25 24 39 39 H 1.09004 * 109.46663 * 60.00200 * 26 25 24 40 40 H 1.08998 * 109.47152 * 179.97438 * 26 25 24 41 41 H 1.07997 * 120.07176 * 180.28101 * 27 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2898 2.1494 -1.0501 5 7 2.7007 3.3131 -0.6918 6 6 2.7286 3.3941 0.6188 7 16 3.2210 4.7913 1.5726 8 7 2.3012 2.1870 1.1032 9 7 2.1728 1.8113 2.4467 10 6 1.0538 2.0134 3.0731 11 6 0.9190 1.6188 4.4864 12 6 1.9951 1.0261 5.1540 13 6 1.8678 0.6571 6.4750 14 6 0.6711 0.8730 7.1477 15 8 0.5504 0.5083 8.4490 16 6 1.5847 -0.1615 8.9953 17 1 2.4903 -0.3132 8.4268 18 6 1.4859 -0.6557 10.2868 19 7 0.3829 -0.4705 10.9795 20 14 2.9191 -1.5847 11.0435 21 1 4.0340 -1.6570 10.0652 22 1 3.3776 -0.8769 12.2658 23 1 2.4848 -2.9590 11.4009 24 6 -0.4068 1.4640 6.4874 25 8 -1.5763 1.6746 7.1480 26 6 -2.6374 2.2845 6.4103 27 6 -0.2832 1.8410 5.1637 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 4.5989 4.5234 1.7060 34 1 0.2221 2.4716 2.5587 35 1 2.9262 0.8567 4.6335 36 1 2.7000 0.1997 6.9895 37 1 0.3139 -0.8160 11.8832 38 1 -2.3185 3.2658 6.0592 39 1 -2.8924 1.6580 5.5555 40 1 -3.5106 2.3943 7.0533 41 1 -1.1150 2.3027 4.6526 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008183036.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:09 Heat of formation + Delta-G solvation = 89.978410 kcal Electronic energy + Delta-G solvation = -27113.078833 eV Core-core repulsion = 23123.794581 eV Total energy + Delta-G solvation = -3989.284252 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.93908 -39.93708 -37.90146 -37.44207 -35.87912 -34.33943 -32.84239 -32.10608 -29.95262 -29.82596 -29.12428 -26.88182 -25.85269 -24.65953 -23.86892 -22.74485 -21.95296 -21.32639 -20.06905 -18.58135 -18.28749 -17.86622 -17.41820 -16.62812 -16.02039 -15.56296 -15.38939 -15.14221 -15.01662 -14.84841 -14.48783 -14.23522 -14.14353 -13.82552 -13.67677 -12.94876 -12.72795 -12.59244 -12.51770 -12.09279 -11.95424 -11.88660 -11.72871 -11.47739 -11.47003 -11.38912 -11.34420 -11.16102 -10.85941 -10.77236 -10.63272 -10.24365 -9.86061 -9.65168 -9.31936 -9.15851 -8.53374 -8.24678 -7.27683 -6.83464 -4.32760 0.75634 0.86159 1.23223 1.94585 2.01465 2.19988 2.44283 2.68723 2.94371 2.95634 3.01552 3.66819 3.75697 3.92101 4.21027 4.43357 4.53817 4.69119 4.80355 4.90560 4.92703 5.12130 5.13930 5.30279 5.34035 5.39569 5.45106 5.51165 5.55744 5.64863 5.70181 5.73890 5.78687 5.88886 6.01877 6.05174 6.23249 6.56314 6.73933 6.88488 6.97685 7.25094 7.57120 7.63643 7.87990 8.40106 8.59073 9.24152 10.31102 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.012825 B = 0.002531 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.688095 B =11058.102651 C =11478.181178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.039 4.039 3 C 0.200 3.800 4 N -0.291 5.291 5 N -0.241 5.241 6 C 0.139 3.861 7 S -0.012 6.012 8 N -0.315 5.315 9 N -0.308 5.308 10 C 0.239 3.761 11 C -0.174 4.174 12 C -0.019 4.019 13 C -0.233 4.233 14 C 0.158 3.842 15 O -0.136 6.136 16 C -0.387 4.387 17 H 0.103 0.897 18 C 0.043 3.957 19 N -0.835 5.835 20 Si 0.948 3.052 21 H -0.262 1.262 22 H -0.272 1.272 23 H -0.272 1.272 24 C 0.054 3.946 25 O -0.302 6.302 26 C 0.029 3.971 27 C -0.123 4.123 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.123 0.877 36 H 0.140 0.860 37 H 0.277 0.723 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.093 0.907 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.886 2.695 -12.420 12.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.079 4.079 3 C -0.069 4.069 4 N -0.136 5.136 5 N -0.087 5.087 6 C -0.236 4.236 7 S 0.138 5.862 8 N -0.091 5.091 9 N -0.116 5.116 10 C 0.040 3.960 11 C -0.180 4.180 12 C -0.040 4.040 13 C -0.253 4.253 14 C 0.099 3.901 15 O -0.034 6.034 16 C -0.462 4.462 17 H 0.120 0.880 18 C -0.166 4.166 19 N -0.465 5.465 20 Si 0.771 3.229 21 H -0.186 1.186 22 H -0.197 1.197 23 H -0.197 1.197 24 C 0.009 3.991 25 O -0.215 6.215 26 C -0.067 4.067 27 C -0.144 4.144 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.120 0.880 32 H 0.108 0.892 33 H 0.071 0.929 34 H 0.131 0.869 35 H 0.141 0.859 36 H 0.158 0.842 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.112 0.888 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.161 3.496 -12.710 13.183 hybrid contribution 0.444 -1.250 0.744 1.520 sum 0.283 2.247 -11.966 12.179 Atomic orbital electron populations 1.21750 0.93349 1.03016 1.02393 1.20072 0.96746 0.86003 1.05072 1.25390 1.01649 0.97961 0.81900 1.74137 1.17206 0.98895 1.23340 1.74769 1.14984 1.11956 1.07030 1.26055 1.11806 0.91281 0.94413 1.86919 1.12627 1.20899 1.65779 1.48322 1.45603 1.10203 1.04991 1.76100 1.22371 1.25876 0.87276 1.25223 0.92216 0.84504 0.94085 1.17352 0.96297 1.14643 0.89723 1.20926 0.96919 0.92828 0.93303 1.20843 0.98189 1.10850 0.95435 1.18907 0.91433 0.94488 0.85311 1.83995 1.41667 1.59966 1.17791 1.21690 0.93838 1.32294 0.98351 0.88007 1.25495 0.98732 0.96936 0.95426 1.70065 1.25541 1.39954 1.10947 0.85534 0.79161 0.78863 0.79333 1.18610 1.19699 1.19695 1.17923 0.86047 1.04446 0.90692 1.86255 1.19650 1.77185 1.38455 1.22943 0.89635 0.96740 0.97346 1.20667 0.97517 1.03325 0.92893 0.91710 0.90794 0.92972 0.87987 0.89227 0.92893 0.86931 0.85898 0.84225 0.91246 0.93321 0.93386 0.88818 0.85671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.89 37.16 0.37 -0.93 16 2 C -0.04 -0.40 6.50 -27.88 -0.18 -0.58 16 3 C 0.20 2.79 7.46 -153.71 -1.15 1.65 16 4 N -0.29 -4.65 12.17 33.05 0.40 -4.25 16 5 N -0.24 -3.99 12.23 30.76 0.38 -3.61 16 6 C 0.14 2.11 8.53 -87.94 -0.75 1.36 16 7 S -0.01 -0.15 26.26 -107.50 -2.82 -2.97 16 8 N -0.32 -4.62 3.47 -9.76 -0.03 -4.65 16 9 N -0.31 -4.36 10.59 32.14 0.34 -4.02 16 10 C 0.24 3.11 10.82 -14.70 -0.16 2.95 16 11 C -0.17 -2.58 5.87 -105.03 -0.62 -3.20 16 12 C -0.02 -0.31 9.56 -39.17 -0.37 -0.68 16 13 C -0.23 -4.37 9.14 -39.49 -0.36 -4.73 16 14 C 0.16 3.39 6.67 -38.82 -0.26 3.13 16 15 O -0.14 -3.51 9.53 -14.22 -0.14 -3.64 16 16 C -0.39 -9.60 9.48 30.88 0.29 -9.31 16 17 H 0.10 2.28 5.19 -52.49 -0.27 2.01 16 18 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 19 N -0.83 -22.21 13.67 55.48 0.76 -21.45 16 20 Si 0.95 18.28 29.55 -169.99 -5.02 13.26 16 21 H -0.26 -4.82 7.11 56.52 0.40 -4.41 16 22 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 23 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 24 C 0.05 1.02 6.70 -39.11 -0.26 0.76 16 25 O -0.30 -5.70 10.28 -34.20 -0.35 -6.05 16 26 C 0.03 0.36 9.81 101.05 0.99 1.35 16 27 C -0.12 -1.84 8.77 -39.03 -0.34 -2.18 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.11 1.16 9.55 96.90 0.93 2.08 16 34 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.12 1.83 7.54 -52.48 -0.40 1.44 16 36 H 0.14 2.58 5.62 -52.49 -0.29 2.28 16 37 H 0.28 6.69 8.31 -40.82 -0.34 6.35 16 38 H 0.05 0.52 7.65 -51.93 -0.40 0.12 16 39 H 0.05 0.51 7.67 -51.93 -0.40 0.11 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.13 1.47 6.28 -52.49 -0.33 1.14 16 LS Contribution 378.49 15.07 5.70 5.70 Total: -1.00 -29.91 378.49 -6.94 -36.85 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -3.26 Total: 4.29 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -2.90 Total: -9.46 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 1.84 Total: -37.98 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -0.49 Total: -9.70 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.02 Total: 13.26 kcal Atomic # 16 Polarization: -0.15 SS G_CDS: -2.82 Total: -2.97 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.91 -6.94 -36.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008183036.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.830 kcal (2) G-P(sol) polarization free energy of solvation -29.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds