Wall clock time and date at job start Tue Mar 31 2020 06:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33612 * 122.06433 * 2 1 4 4 S 1.76237 * 108.27354 * 180.02562 * 3 2 1 5 5 C 1.76168 * 89.85883 * 359.97438 * 4 3 2 6 6 C 1.47434 * 125.48427 * 180.02562 * 5 4 3 7 7 C 1.43197 * 120.00193 * 180.02562 * 6 5 4 8 8 N 5.00243 * 114.84954 * 180.02562 * 2 1 3 9 9 C 1.37793 * 119.99588 * 0.02585 * 6 5 4 10 10 C 1.41828 * 119.99676 * 187.09144 * 9 6 5 11 11 C 1.37780 * 126.86497 * 17.27708 * 10 9 6 12 12 N 1.35712 * 109.47154 * 180.02562 * 11 10 9 13 13 C 1.46507 * 124.73779 * 180.02562 * 12 11 10 14 14 C 1.50705 * 109.46574 * 265.01969 * 13 12 11 15 15 H 1.07995 * 119.99885 * 0.02562 * 14 13 12 16 16 C 1.37870 * 119.99486 * 179.97438 * 14 13 12 17 17 N 1.31523 * 120.00649 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99827 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46962 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47535 * 120.00204 * 18 16 14 21 21 H 1.48507 * 109.47191 * 240.00072 * 18 16 14 22 22 C 1.37986 * 110.52485 * 359.97438 * 12 11 10 23 23 C 1.39172 * 132.95949 * 180.02562 * 22 12 11 24 24 C 1.37767 * 119.95023 * 179.27315 * 23 22 12 25 25 C 1.38741 * 120.63325 * 0.56902 * 24 23 22 26 26 C 1.37774 * 120.27740 * 359.64845 * 25 24 23 27 27 C 1.39247 * 119.68868 * 359.97438 * 26 25 24 28 28 N 1.30419 * 109.03493 * 0.26889 * 5 4 3 29 29 H 1.08996 * 109.47484 * 90.00282 * 1 2 3 30 30 H 1.09002 * 109.47047 * 209.99969 * 1 2 3 31 31 H 1.08996 * 109.46661 * 329.99788 * 1 2 3 32 32 H 1.08004 * 125.86247 * 0.05856 * 3 2 1 33 33 H 1.07996 * 120.00408 * 6.82145 * 9 6 5 34 34 H 1.08004 * 125.26917 * 359.97438 * 11 10 9 35 35 H 1.08994 * 109.46833 * 25.01670 * 13 12 11 36 36 H 1.09000 * 109.46941 * 145.02172 * 13 12 11 37 37 H 0.96993 * 119.99901 * 179.97438 * 17 16 14 38 38 H 1.08007 * 120.02246 * 359.97438 * 23 22 12 39 39 H 1.08005 * 119.68381 * 180.18921 * 24 23 22 40 40 H 1.07997 * 119.86372 * 179.62579 * 25 24 23 41 41 H 1.08001 * 120.15706 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2163 1.1323 0.0000 4 16 3.9279 0.7122 -0.0007 5 6 3.5037 -0.9977 -0.0002 6 6 4.4629 -2.1174 0.0001 7 6 3.9869 -3.4679 0.0000 8 7 3.6092 -4.5393 -0.0020 9 6 5.8174 -1.8642 0.0005 10 6 6.7384 -2.9320 -0.1509 11 6 6.4677 -4.1955 -0.6292 12 7 7.6058 -4.9348 -0.6233 13 6 7.6981 -6.3286 -1.0653 14 6 7.5601 -7.2430 0.1246 15 1 7.4173 -6.8276 1.1112 16 6 7.6149 -8.6099 -0.0465 17 7 7.7882 -9.1159 -1.2481 18 14 7.4430 -9.7435 1.4283 19 1 7.2595 -8.9315 2.6579 20 1 6.2655 -10.6281 1.2382 21 1 8.6683 -10.5721 1.5612 22 6 8.6640 -4.1902 -0.1439 23 6 10.0110 -4.4765 0.0574 24 6 10.8548 -3.5046 0.5486 25 6 10.3732 -2.2407 0.8577 26 6 9.0420 -1.9393 0.6696 27 6 8.1796 -2.9099 0.1664 28 7 2.2047 -1.1137 -0.0053 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3632 0.8900 0.5139 32 1 1.8105 2.1332 0.0009 33 1 6.1776 -0.8521 0.1117 34 1 5.4995 -4.5440 -0.9572 35 1 6.9006 -6.5372 -1.7783 36 1 8.6643 -6.4954 -1.5416 37 1 7.8271 -10.0776 -1.3684 38 1 10.3968 -5.4565 -0.1820 39 1 11.9000 -3.7305 0.7003 40 1 11.0445 -1.4900 1.2477 41 1 8.6692 -0.9550 0.9112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008207459.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:34 Heat of formation + Delta-G solvation = 145.134918 kcal Electronic energy + Delta-G solvation = -26035.930816 eV Core-core repulsion = 22394.461681 eV Total energy + Delta-G solvation = -3641.469135 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 349.094 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.10203 -39.71196 -37.27346 -36.53900 -34.65122 -33.40983 -32.27771 -30.84884 -29.86152 -28.55276 -27.78288 -27.20996 -24.81668 -23.34170 -23.07105 -22.00737 -21.10981 -20.12026 -18.86371 -18.09367 -17.06204 -16.80740 -16.38385 -15.83607 -15.35957 -15.01953 -14.96310 -14.58079 -14.27901 -13.97393 -13.72911 -13.58833 -13.44946 -13.29640 -13.01054 -12.81174 -12.60190 -12.55754 -12.53558 -12.19490 -11.86077 -11.57064 -11.48459 -11.39050 -11.27386 -11.04898 -10.94348 -10.64322 -10.47293 -10.33165 -9.78057 -9.73944 -9.47135 -9.13286 -8.78628 -8.38994 -7.90784 -6.95889 -6.39119 -4.50162 0.08741 1.12877 1.16267 1.56322 1.62330 2.01950 2.78177 3.03731 3.12295 3.13517 3.22271 3.26909 3.42513 3.86437 3.92207 4.18576 4.23314 4.30117 4.80380 4.89842 4.94242 5.01618 5.05933 5.11617 5.16844 5.28082 5.42416 5.45226 5.50023 5.60258 5.67105 5.81448 5.84015 6.01148 6.05311 6.14445 6.22785 6.33076 6.51451 6.72248 6.74447 6.84226 6.95643 7.14872 7.48888 7.62675 7.67692 7.69840 7.70699 7.91687 8.55860 9.18840 10.67120 Molecular weight = 349.09amu Principal moments of inertia in cm(-1) A = 0.010577 B = 0.003114 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.637102 B = 8988.951695 C =11165.733447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.078 3.922 3 C -0.270 4.270 4 S 0.076 5.924 5 C 0.163 3.837 6 C -0.097 4.097 7 C 0.275 3.725 8 N -0.422 5.422 9 C 0.111 3.889 10 C -0.242 4.242 11 C 0.149 3.851 12 N -0.422 5.422 13 C 0.226 3.774 14 C -0.545 4.545 15 H 0.067 0.933 16 C 0.069 3.931 17 N -0.887 5.887 18 Si 0.906 3.094 19 H -0.270 1.270 20 H -0.279 1.279 21 H -0.279 1.279 22 C 0.091 3.909 23 C -0.095 4.095 24 C -0.119 4.119 25 C -0.137 4.137 26 C -0.091 4.091 27 C -0.073 4.073 28 N -0.481 5.481 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.175 0.825 33 H 0.140 0.860 34 H 0.177 0.823 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.269 0.731 38 H 0.127 0.873 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.447 21.172 1.374 21.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.055 4.055 3 C -0.409 4.409 4 S 0.333 5.667 5 C -0.111 4.111 6 C -0.107 4.107 7 C -0.039 4.039 8 N -0.098 5.098 9 C 0.083 3.917 10 C -0.249 4.249 11 C 0.006 3.994 12 N -0.093 5.093 13 C 0.109 3.891 14 C -0.583 4.583 15 H 0.085 0.915 16 C -0.135 4.135 17 N -0.524 5.524 18 Si 0.733 3.267 19 H -0.194 1.194 20 H -0.204 1.204 21 H -0.205 1.205 22 C -0.014 4.014 23 C -0.115 4.115 24 C -0.138 4.138 25 C -0.156 4.156 26 C -0.109 4.109 27 C -0.077 4.077 28 N -0.195 5.195 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.192 0.808 33 H 0.158 0.842 34 H 0.193 0.807 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.145 0.855 39 H 0.140 0.860 40 H 0.137 0.863 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.281 19.085 1.142 19.254 hybrid contribution -0.941 -0.312 0.683 1.204 sum -3.222 18.773 1.825 19.134 Atomic orbital electron populations 1.20401 0.87464 1.03262 1.02924 1.20153 0.98272 0.86434 1.00601 1.26553 0.94700 1.03468 1.16143 1.84771 1.07528 1.03347 1.71065 1.25268 0.91647 0.93908 1.00302 1.15393 0.90047 0.83382 1.21880 1.25000 0.93147 0.92069 0.93725 1.81319 1.07274 1.11419 1.09820 1.20905 0.88997 0.97957 0.83862 1.17956 0.92769 0.94661 1.19546 1.23386 0.91654 0.89698 0.94645 1.45022 1.05477 1.13182 1.45627 1.20010 1.00159 0.71908 0.97049 1.21281 1.52739 0.90852 0.93466 0.91465 1.24926 0.93976 0.97936 0.96656 1.69918 1.47922 1.13290 1.21315 0.86288 0.78041 0.80286 0.82107 1.19402 1.20429 1.20497 1.18356 0.90256 0.90842 1.01904 1.20286 0.90066 1.00179 1.00973 1.20750 0.99097 0.93106 1.00882 1.20836 0.95130 0.96878 1.02712 1.20296 0.92663 0.97898 1.00069 1.18932 0.91977 0.93729 1.03059 1.66600 1.04107 1.30510 1.18267 0.90674 0.90582 0.90835 0.80763 0.84229 0.80657 0.92906 0.92906 0.92089 0.85517 0.86018 0.86277 0.86237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 10.28 36.01 0.37 -0.34 16 2 C 0.08 0.91 6.69 -84.39 -0.56 0.35 16 3 C -0.27 -2.61 11.07 29.11 0.32 -2.29 16 4 S 0.08 0.76 22.35 -107.50 -2.40 -1.65 16 5 C 0.16 2.21 7.34 -14.41 -0.11 2.10 16 6 C -0.10 -1.41 5.90 -104.39 -0.62 -2.02 16 7 C 0.27 4.88 11.84 -22.47 -0.27 4.62 16 8 N -0.42 -8.53 17.39 41.84 0.73 -7.80 16 9 C 0.11 1.43 9.61 -38.37 -0.37 1.06 16 10 C -0.24 -3.91 5.93 -104.88 -0.62 -4.53 16 11 C 0.15 2.83 9.85 -16.00 -0.16 2.67 16 12 N -0.42 -8.76 2.73 -115.01 -0.31 -9.08 16 13 C 0.23 5.37 5.70 -5.19 -0.03 5.34 16 14 C -0.55 -14.41 9.39 -34.44 -0.32 -14.73 16 15 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 16 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 17 N -0.89 -24.37 13.29 55.43 0.74 -23.64 16 18 Si 0.91 20.95 29.54 -169.99 -5.02 15.93 16 19 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 C 0.09 1.73 6.78 -83.95 -0.57 1.16 16 23 C -0.10 -1.63 9.96 -39.41 -0.39 -2.03 16 24 C -0.12 -1.65 10.01 -39.57 -0.40 -2.05 16 25 C -0.14 -1.72 10.03 -39.57 -0.40 -2.12 16 26 C -0.09 -1.21 10.09 -39.38 -0.40 -1.61 16 27 C -0.07 -1.21 6.34 -104.91 -0.66 -1.87 16 28 N -0.48 -7.07 10.31 -7.64 -0.08 -7.15 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.46 8.11 -51.93 -0.42 0.04 16 32 H 0.18 1.16 8.06 -52.48 -0.42 0.73 16 33 H 0.14 1.32 7.26 -52.49 -0.38 0.94 16 34 H 0.18 3.39 4.91 -52.48 -0.26 3.14 16 35 H 0.05 1.31 8.11 -51.93 -0.42 0.89 16 36 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.13 2.22 8.06 -52.48 -0.42 1.80 16 39 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 40 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 378.41 15.07 5.70 5.70 Total: -1.00 -30.28 378.41 -10.33 -40.61 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -4.41 Total: 1.59 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -5.28 Total: -14.52 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: 1.07 Total: -47.66 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.40 Total: -1.65 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.28 -10.33 -40.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008207459.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.750 kcal (2) G-P(sol) polarization free energy of solvation -30.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds