Wall clock time and date at job start Tue Mar 31 2020 05:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38383 * 119.84082 * 2 1 4 4 C 1.37922 * 120.15366 * 179.97438 * 3 2 1 5 5 C 1.39689 * 119.84451 * 0.02562 * 4 3 2 6 6 C 1.47629 * 120.15652 * 179.97438 * 5 4 3 7 7 C 1.35017 * 124.36271 * 180.02562 * 6 5 4 8 8 C 1.47254 * 106.47129 * 179.97438 * 7 6 5 9 9 C 1.38231 * 127.83782 * 179.74359 * 8 7 6 10 10 C 1.46271 * 120.00121 * 172.00492 * 9 8 7 11 11 C 1.40358 * 120.12638 * 324.55575 * 10 9 8 12 12 C 1.36524 * 119.86852 * 179.69149 * 11 10 9 13 13 C 1.39284 * 120.12802 * 0.60615 * 12 11 10 14 14 O 1.35506 * 119.87356 * 179.69266 * 13 12 11 15 15 C 1.34748 * 116.99864 * 185.53265 * 14 13 12 16 16 H 1.07990 * 120.00369 * 354.91929 * 15 14 13 17 17 C 1.38742 * 119.99519 * 174.92340 * 15 14 13 18 18 N 1.31496 * 120.00164 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99907 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47090 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47324 * 119.99927 * 19 17 15 22 22 H 1.48503 * 109.47237 * 240.00362 * 19 17 15 23 23 C 1.39291 * 120.25857 * 359.66681 * 13 12 11 24 24 C 1.36527 * 120.12418 * 0.02785 * 23 13 12 25 25 C 1.47516 * 104.32212 * 359.97438 * 8 7 6 26 26 O 1.21682 * 126.71235 * 179.97438 * 25 8 7 27 27 O 1.34517 * 106.57053 * 0.02562 * 25 8 7 28 28 C 1.39696 * 119.68794 * 0.27671 * 5 4 3 29 29 C 1.37925 * 119.83916 * 359.44723 * 28 5 4 30 30 H 1.09001 * 109.47328 * 89.99616 * 1 2 3 31 31 H 1.08997 * 109.47074 * 209.99693 * 1 2 3 32 32 H 1.08999 * 109.46813 * 329.99534 * 1 2 3 33 33 H 1.08002 * 119.92401 * 0.02562 * 3 2 1 34 34 H 1.08000 * 120.07838 * 180.02562 * 4 3 2 35 35 H 1.08000 * 126.76534 * 0.02562 * 7 6 5 36 36 H 1.08006 * 119.99721 * 351.99916 * 9 8 7 37 37 H 1.07997 * 120.06468 * 359.97438 * 11 10 9 38 38 H 1.07995 * 119.93496 * 180.29512 * 12 11 10 39 39 H 0.96993 * 120.00035 * 179.97438 * 18 17 15 40 40 H 1.08000 * 119.93989 * 179.97438 * 23 13 12 41 41 H 1.08003 * 120.05697 * 180.02562 * 24 23 13 42 42 H 1.07997 * 120.07354 * 179.72221 * 28 5 4 43 43 H 1.07997 * 119.91860 * 180.27842 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1956 1.2003 0.0000 4 6 3.5748 1.2079 0.0005 5 6 4.2766 0.0001 0.0005 6 6 5.7529 0.0001 0.0005 7 6 6.5150 -1.1144 0.0000 8 6 7.9163 -0.6620 -0.0004 9 6 9.0587 -1.4404 0.0039 10 6 10.3696 -0.8163 -0.1735 11 6 10.5146 0.2872 -1.0286 12 6 11.7394 0.8696 -1.1855 13 6 12.8462 0.3629 -0.5086 14 8 14.0607 0.9411 -0.6729 15 6 15.1107 0.3368 -0.0829 16 1 14.9520 -0.5190 0.5563 17 6 16.3957 0.8143 -0.2967 18 7 16.5889 1.8561 -1.0754 19 14 17.8513 -0.0228 0.5217 20 1 17.3695 -1.1629 1.3423 21 1 18.7852 -0.5216 -0.5196 22 1 18.5563 0.9508 1.3936 23 6 12.7096 -0.7356 0.3369 24 6 11.4884 -1.3222 0.5063 25 6 7.8245 0.8103 -0.0007 26 8 8.7527 1.5970 -0.0007 27 8 6.5138 1.1129 0.0001 28 6 3.5749 -1.2078 -0.0059 29 6 2.1957 -1.2003 -0.0006 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 1.6518 2.1334 0.0004 34 1 4.1110 2.1454 0.0010 35 1 6.1657 -2.1364 -0.0008 36 1 8.9832 -2.5094 0.1384 37 1 9.6580 0.6777 -1.5580 38 1 11.8512 1.7217 -1.8395 39 1 17.4872 2.1901 -1.2246 40 1 13.5713 -1.1245 0.8589 41 1 11.3836 -2.1736 1.1625 42 1 4.1112 -2.1453 -0.0104 43 1 1.6519 -2.1334 -0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009323588.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:53 Heat of formation + Delta-G solvation = -0.429721 kcal Electronic energy + Delta-G solvation = -27592.857346 eV Core-core repulsion = 23535.456344 eV Total energy + Delta-G solvation = -4057.401002 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.119 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.95107 -39.50510 -39.24669 -37.64612 -36.71794 -34.09738 -33.47091 -32.54330 -31.35832 -30.59388 -30.39181 -28.58408 -26.47049 -25.58907 -24.57594 -23.10854 -22.22080 -21.93235 -21.34032 -20.81341 -19.08211 -18.24183 -17.58975 -16.95712 -16.42114 -16.23440 -15.62470 -15.60120 -15.13447 -14.86690 -14.53636 -14.28323 -14.15266 -13.94580 -13.88011 -13.78103 -13.40753 -13.08399 -13.06056 -12.95794 -12.61894 -12.55402 -12.46436 -12.02208 -11.92190 -11.68391 -11.55929 -11.25463 -11.22315 -11.07117 -10.72169 -10.57390 -10.44157 -9.84680 -9.55519 -9.33436 -9.26250 -9.02366 -8.33321 -7.96739 -6.96707 -6.73016 -4.23972 0.08448 0.94782 1.11572 2.18250 2.27737 2.54887 2.87582 2.99677 3.00423 3.06957 3.25219 3.58281 3.76717 4.22625 4.37012 4.45989 4.53586 4.56344 4.68970 4.89070 4.95906 5.03530 5.08906 5.11513 5.19784 5.22271 5.29972 5.40930 5.42764 5.48868 5.61118 5.69914 5.75677 5.89714 5.97928 6.06233 6.14629 6.17686 6.26812 6.31835 6.44964 6.56218 6.64681 6.79238 6.88040 7.13497 7.20664 7.24317 7.27503 7.64983 7.73500 7.75577 8.70895 9.39018 10.42943 Molecular weight = 348.12amu Principal moments of inertia in cm(-1) A = 0.040800 B = 0.001684 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.102943 B =16622.661768 C =17107.033027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.085 4.085 3 C -0.119 4.119 4 C -0.095 4.095 5 C -0.026 4.026 6 C 0.062 3.938 7 C -0.164 4.164 8 C -0.286 4.286 9 C 0.110 3.890 10 C -0.231 4.231 11 C 0.008 3.992 12 C -0.204 4.204 13 C 0.177 3.823 14 O -0.153 6.153 15 C -0.390 4.390 16 H 0.101 0.899 17 C 0.041 3.959 18 N -0.844 5.844 19 Si 0.948 3.052 20 H -0.264 1.264 21 H -0.273 1.273 22 H -0.273 1.273 23 C -0.250 4.250 24 C -0.022 4.022 25 C 0.502 3.498 26 O -0.434 6.434 27 O -0.274 6.274 28 C -0.095 4.095 29 C -0.119 4.119 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.125 0.875 34 H 0.131 0.869 35 H 0.157 0.843 36 H 0.134 0.866 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.276 0.724 40 H 0.132 0.868 41 H 0.114 0.886 42 H 0.129 0.871 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.562 -8.727 2.296 27.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.137 4.137 4 C -0.113 4.113 5 C -0.026 4.026 6 C 0.018 3.982 7 C -0.183 4.183 8 C -0.289 4.289 9 C 0.092 3.908 10 C -0.232 4.232 11 C -0.010 4.010 12 C -0.223 4.223 13 C 0.119 3.881 14 O -0.053 6.053 15 C -0.465 4.465 16 H 0.118 0.882 17 C -0.166 4.166 18 N -0.476 5.476 19 Si 0.771 3.229 20 H -0.188 1.188 21 H -0.198 1.198 22 H -0.198 1.198 23 C -0.269 4.269 24 C -0.041 4.041 25 C 0.349 3.651 26 O -0.320 6.320 27 O -0.186 6.186 28 C -0.113 4.113 29 C -0.137 4.137 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.143 0.857 34 H 0.149 0.851 35 H 0.175 0.825 36 H 0.151 0.849 37 H 0.135 0.865 38 H 0.139 0.861 39 H 0.086 0.914 40 H 0.149 0.851 41 H 0.132 0.868 42 H 0.147 0.853 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -24.865 -7.714 2.079 26.117 hybrid contribution 0.798 -0.424 0.480 1.023 sum -24.067 -8.138 2.559 25.534 Atomic orbital electron populations 1.20818 0.91087 1.02880 1.02431 1.20063 0.96222 0.93182 0.99008 1.20986 0.93832 0.97753 1.01121 1.21346 0.94161 0.97750 0.98010 1.17987 0.87519 0.94242 1.02868 1.19603 0.89897 0.83981 1.04741 1.22544 0.91263 0.98360 1.06089 1.21455 0.93713 0.93461 1.20225 1.22613 0.89936 0.97727 0.80568 1.18392 0.92208 1.03385 1.09233 1.20711 0.95670 0.90636 0.94015 1.19879 0.91268 1.04593 1.06557 1.19734 0.86679 0.90204 0.91478 1.83875 1.12262 1.46204 1.62922 1.21625 0.83248 1.14019 1.27606 0.88212 1.25470 0.98252 0.96307 0.96578 1.70020 1.23426 1.21314 1.32794 0.85540 0.79497 0.79009 0.78823 1.18761 1.19793 1.19807 1.20805 0.98399 1.01333 1.06338 1.20687 0.91292 0.96709 0.95368 1.20870 0.79879 0.89504 0.74844 1.91050 1.35473 1.59100 1.46349 1.84359 1.19995 1.34511 1.79749 1.21070 0.94051 0.96736 0.99475 1.20904 0.93598 0.97722 1.01443 0.91034 0.91453 0.91458 0.85675 0.85143 0.82511 0.84887 0.86512 0.86143 0.91413 0.85066 0.86840 0.85268 0.85537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.58 10.00 36.01 0.36 -0.22 16 2 C -0.08 -0.65 5.89 -104.51 -0.62 -1.26 16 3 C -0.12 -1.01 9.68 -39.64 -0.38 -1.40 16 4 C -0.09 -0.99 9.70 -39.16 -0.38 -1.37 16 5 C -0.03 -0.29 5.87 -104.98 -0.62 -0.90 16 6 C 0.06 0.81 6.91 -36.89 -0.26 0.56 16 7 C -0.16 -1.95 10.38 -37.06 -0.38 -2.33 16 8 C -0.29 -4.22 6.08 -102.45 -0.62 -4.84 16 9 C 0.11 1.54 9.93 -36.36 -0.36 1.18 16 10 C -0.23 -4.07 5.54 -105.08 -0.58 -4.65 16 11 C 0.01 0.16 7.04 -39.40 -0.28 -0.12 16 12 C -0.20 -4.48 9.93 -39.81 -0.40 -4.88 16 13 C 0.18 4.21 6.66 -38.80 -0.26 3.95 16 14 O -0.15 -4.22 9.74 1.03 0.01 -4.21 16 15 C -0.39 -10.33 9.48 30.92 0.29 -10.04 16 16 H 0.10 2.41 5.18 -52.49 -0.27 2.14 16 17 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 18 N -0.84 -23.56 13.67 55.48 0.76 -22.80 16 19 Si 0.95 19.29 29.55 -169.99 -5.02 14.26 16 20 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 21 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 22 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 23 C -0.25 -5.20 9.10 -39.81 -0.36 -5.56 16 24 C -0.02 -0.39 9.75 -39.41 -0.38 -0.77 16 25 C 0.50 8.87 7.94 34.51 0.27 9.15 16 26 O -0.43 -9.00 13.98 -18.95 -0.26 -9.27 16 27 O -0.27 -4.42 10.16 -20.42 -0.21 -4.63 16 28 C -0.10 -0.83 9.52 -39.15 -0.37 -1.20 16 29 C -0.12 -0.89 9.68 -39.64 -0.38 -1.28 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 32 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 33 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 34 H 0.13 1.38 7.83 -52.49 -0.41 0.96 16 35 H 0.16 1.30 7.09 -52.49 -0.37 0.93 16 36 H 0.13 1.33 8.06 -52.48 -0.42 0.90 16 37 H 0.12 2.22 5.92 -52.49 -0.31 1.91 16 38 H 0.12 2.60 8.06 -52.49 -0.42 2.18 16 39 H 0.28 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.13 2.66 5.61 -52.49 -0.29 2.36 16 41 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 42 H 0.13 0.86 6.82 -52.49 -0.36 0.50 16 43 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 LS Contribution 374.36 15.07 5.64 5.64 Total: -1.00 -31.48 374.36 -9.42 -40.90 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -4.53 Total: 5.13 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: -5.80 Total: -25.02 kcal Atomic # 7 Polarization: -23.56 SS G_CDS: 0.76 Total: -22.80 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.46 Total: -18.11 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.26 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.48 -9.42 -40.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009323588.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.466 kcal (2) G-P(sol) polarization free energy of solvation -31.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds