Wall clock time and date at job start Tue Mar 31 2020 06:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35893 * 117.00163 * 2 1 4 4 C 1.38768 * 119.92627 * 0.02562 * 3 2 1 5 5 C 1.37865 * 120.15244 * 179.97438 * 4 3 2 6 6 C 1.39671 * 119.99947 * 359.97438 * 5 4 3 7 7 C 1.47648 * 120.07587 * 179.97438 * 6 5 4 8 8 N 1.30442 * 124.73668 * 359.97438 * 7 6 5 9 9 C 1.30566 * 117.30251 * 180.02562 * 8 7 6 10 10 C 1.50698 * 122.99405 * 180.02562 * 9 8 7 11 11 C 1.37078 * 114.01556 * 0.02562 * 9 8 7 12 12 C 1.46258 * 126.12815 * 180.02562 * 11 9 8 13 13 O 1.21682 * 119.99934 * 0.02562 * 12 11 9 14 14 O 1.34907 * 120.00426 * 179.97438 * 12 11 9 15 15 C 1.34844 * 117.00302 * 179.97438 * 14 12 11 16 16 H 1.08000 * 120.00018 * 0.02562 * 15 14 12 17 17 C 1.38789 * 119.99982 * 179.97438 * 15 14 12 18 18 N 1.31433 * 119.99963 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99796 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47260 * 60.00397 * 19 17 15 21 21 H 1.48504 * 109.46873 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47170 * 300.00089 * 19 17 15 23 23 S 1.70913 * 124.74415 * 179.69873 * 7 6 5 24 24 C 1.39683 * 119.85287 * 359.97438 * 6 5 4 25 25 C 1.38206 * 119.85103 * 0.02562 * 24 6 5 26 26 O 1.36001 * 119.99965 * 179.97438 * 25 24 6 27 27 C 1.42901 * 117.00140 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.47034 * 300.00002 * 1 2 3 29 29 H 1.09001 * 109.46907 * 60.00170 * 1 2 3 30 30 H 1.08997 * 109.47071 * 180.02562 * 1 2 3 31 31 H 1.07998 * 119.92122 * 0.25505 * 4 3 2 32 32 H 1.08005 * 119.99959 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.47204 * 90.02817 * 10 9 8 34 34 H 1.08994 * 109.47736 * 210.02817 * 10 9 8 35 35 H 1.09004 * 109.46800 * 330.03012 * 10 9 8 36 36 H 0.97002 * 119.99731 * 179.97438 * 18 17 15 37 37 H 1.08003 * 120.07828 * 180.02562 * 24 6 5 38 38 H 1.08993 * 109.47043 * 59.99986 * 27 26 25 39 39 H 1.08999 * 109.46539 * 180.02562 * 27 26 25 40 40 H 1.08999 * 109.47114 * 299.99898 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2887 2.3737 0.0005 5 6 1.9098 3.6045 0.0011 6 6 3.3043 3.6830 0.0016 7 6 3.9712 5.0003 0.0016 8 7 3.3505 6.1476 0.0007 9 6 4.0860 7.2264 0.0003 10 6 3.5040 8.6165 -0.0002 11 6 5.4348 6.9820 0.0004 12 6 6.4940 7.9907 0.0006 13 8 6.2078 9.1733 0.0012 14 8 7.7882 7.6099 0.0013 15 6 8.7147 8.5897 0.0009 16 1 8.4061 9.6246 0.0005 17 6 10.0648 8.2681 0.0021 18 7 10.4403 7.0085 0.0030 19 14 11.3482 9.6254 0.0022 20 1 11.1788 10.4667 1.2142 21 1 12.7056 9.0231 0.0029 22 1 11.1804 10.4654 -1.2108 23 16 5.6641 5.2350 0.0096 24 6 4.0666 2.5126 0.0022 25 6 3.4376 1.2819 0.0016 26 8 4.1769 0.1404 0.0016 27 6 5.5982 0.2880 0.0016 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.2103 2.3143 0.0051 32 1 1.3180 4.5080 0.0011 33 1 3.3641 8.9522 1.0273 34 1 4.1843 9.2951 -0.5147 35 1 2.5425 8.6075 -0.5137 36 1 11.3839 6.7838 0.0034 37 1 5.1451 2.5691 0.0030 38 1 5.9065 0.8365 0.8915 39 1 6.0657 -0.6967 0.0012 40 1 5.9066 0.8366 -0.8884 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000010692430.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:56 Heat of formation + Delta-G solvation = -78.339957 kcal Electronic energy + Delta-G solvation = -27007.854766 eV Core-core repulsion = 22881.260269 eV Total energy + Delta-G solvation = -4126.594498 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 349.086 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.79423 -39.76116 -38.74839 -38.66080 -37.06353 -35.28982 -32.35355 -32.24300 -30.66332 -30.03495 -28.32649 -27.60082 -27.42027 -25.40563 -24.72401 -22.59487 -21.77946 -21.56745 -19.02106 -18.69219 -18.12049 -17.73806 -16.93608 -16.79764 -16.30851 -16.02835 -15.45926 -15.40847 -15.14878 -14.98266 -14.78839 -14.52175 -14.27313 -14.13128 -13.48017 -13.19459 -12.98582 -12.73256 -12.50807 -12.38183 -12.29209 -12.11256 -11.76233 -11.55192 -11.42157 -11.40782 -11.36303 -11.18081 -10.94693 -10.59304 -10.56076 -10.02141 -9.60613 -9.29358 -9.13793 -9.04759 -8.74284 -8.56156 -7.68918 -6.60788 -4.20550 0.12753 1.10645 1.38056 1.49526 1.99981 2.78937 2.97651 3.05840 3.09812 3.10147 3.13981 3.59187 3.78101 3.81247 3.98162 4.46119 4.54366 4.69817 4.85414 4.87532 4.91803 4.97969 4.99444 5.06309 5.10904 5.15959 5.20555 5.35167 5.39088 5.40487 5.77060 5.99368 6.00943 6.11473 6.18818 6.28552 6.34711 6.54918 6.73246 6.79330 7.21728 7.31515 7.75503 7.90364 8.52215 8.86497 9.63409 10.55928 Molecular weight = 349.09amu Principal moments of inertia in cm(-1) A = 0.016354 B = 0.002615 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.676783 B =10703.541613 C =12389.463363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.305 6.305 3 C 0.109 3.891 4 C -0.175 4.175 5 C -0.067 4.067 6 C -0.014 4.014 7 C 0.047 3.953 8 N -0.467 5.467 9 C 0.123 3.877 10 C -0.081 4.081 11 C -0.241 4.241 12 C 0.463 3.537 13 O -0.538 6.538 14 O -0.202 6.202 15 C -0.368 4.368 16 H 0.101 0.899 17 C 0.041 3.959 18 N -0.852 5.852 19 Si 0.949 3.051 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.267 1.267 23 S 0.228 5.772 24 C -0.156 4.156 25 C 0.104 3.896 26 O -0.305 6.305 27 C 0.021 3.979 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.274 0.726 37 H 0.140 0.860 38 H 0.058 0.942 39 H 0.102 0.898 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.451 -13.819 -0.032 20.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.218 6.218 3 C 0.062 3.938 4 C -0.194 4.194 5 C -0.089 4.089 6 C -0.018 4.018 7 C -0.223 4.223 8 N -0.182 5.182 9 C -0.017 4.017 10 C -0.140 4.140 11 C -0.363 4.363 12 C 0.310 3.690 13 O -0.437 6.437 14 O -0.109 6.109 15 C -0.444 4.444 16 H 0.119 0.881 17 C -0.165 4.165 18 N -0.487 5.487 19 Si 0.773 3.227 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.192 1.192 23 S 0.489 5.511 24 C -0.177 4.177 25 C 0.058 3.942 26 O -0.219 6.219 27 C -0.074 4.074 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.118 0.882 31 H 0.158 0.842 32 H 0.159 0.841 33 H 0.094 0.906 34 H 0.119 0.881 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.158 0.842 38 H 0.077 0.923 39 H 0.121 0.879 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.902 -14.775 -0.020 20.985 hybrid contribution 0.332 1.716 0.025 1.748 sum -14.571 -13.059 0.005 19.566 Atomic orbital electron populations 1.23097 0.78473 1.04025 1.01413 1.86149 1.21100 1.25888 1.88668 1.18389 0.89046 0.85273 1.01047 1.21018 1.00126 0.91030 1.07233 1.20994 0.92924 0.97663 0.97321 1.17477 0.92882 0.87704 1.03694 1.25008 0.95866 0.95324 1.06056 1.66152 1.38565 0.96626 1.16872 1.20744 0.87068 0.95701 0.98171 1.20554 1.00992 0.89111 1.03330 1.25178 0.97072 0.96121 1.17975 1.18971 0.83008 0.86141 0.80870 1.90652 1.83199 1.17657 1.52233 1.83938 1.12928 1.39447 1.74577 1.21353 0.84130 0.88063 1.50855 0.88097 1.25447 0.97066 0.97981 0.95996 1.69977 1.17670 1.16858 1.44235 0.85653 0.78212 0.79264 0.79604 1.19217 1.20176 1.19218 1.84007 1.03148 1.00327 1.63617 1.21074 1.00350 0.90298 1.06008 1.17904 0.88223 0.85718 1.02310 1.86166 1.19013 1.27658 1.89056 1.23161 0.78185 1.04193 1.01865 0.92555 0.92541 0.88188 0.84189 0.84069 0.90621 0.88130 0.91326 0.91584 0.84198 0.92292 0.87919 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.30 -3.37 10.27 -34.07 -0.35 -3.72 16 3 C 0.11 1.29 6.71 -38.97 -0.26 1.03 16 4 C -0.18 -1.82 9.01 -39.52 -0.36 -2.17 16 5 C -0.07 -0.82 9.66 -39.18 -0.38 -1.20 16 6 C -0.01 -0.19 5.87 -104.98 -0.62 -0.81 16 7 C 0.05 0.78 7.12 -14.30 -0.10 0.67 16 8 N -0.47 -8.26 10.01 -8.21 -0.08 -8.34 16 9 C 0.12 2.35 6.83 -83.55 -0.57 1.78 16 10 C -0.08 -1.36 9.71 36.00 0.35 -1.01 16 11 C -0.24 -5.15 6.51 -36.78 -0.24 -5.39 16 12 C 0.46 11.80 7.85 33.95 0.27 12.06 16 13 O -0.54 -14.20 13.57 -19.41 -0.26 -14.46 16 14 O -0.20 -5.72 9.63 -22.09 -0.21 -5.94 16 15 C -0.37 -10.53 9.65 30.94 0.30 -10.24 16 16 H 0.10 2.87 6.86 -52.49 -0.36 2.51 16 17 C 0.04 1.11 5.50 -17.52 -0.10 1.01 16 18 N -0.85 -23.90 13.67 55.49 0.76 -23.14 16 19 Si 0.95 20.44 29.55 -169.99 -5.02 15.42 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 21 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 23 S 0.23 4.10 21.85 -107.50 -2.35 1.75 16 24 C -0.16 -2.01 8.55 -39.05 -0.33 -2.34 16 25 C 0.10 1.32 6.69 -39.18 -0.26 1.06 16 26 O -0.31 -3.75 10.27 -34.41 -0.35 -4.10 16 27 C 0.02 0.19 9.81 101.05 0.99 1.18 16 28 H 0.06 0.30 7.65 -51.93 -0.40 -0.10 16 29 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 30 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.14 1.02 6.27 -52.49 -0.33 0.69 16 32 H 0.14 1.66 7.78 -52.48 -0.41 1.25 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.10 1.87 6.05 -51.93 -0.31 1.56 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.14 1.66 5.44 -52.48 -0.29 1.38 16 38 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 39 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 LS Contribution 363.34 15.07 5.48 5.48 Total: -1.00 -33.53 363.34 -6.83 -40.37 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -4.11 Total: -0.10 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -0.32 Total: -3.21 kcal Atomic # 7 Polarization: -32.16 SS G_CDS: 0.68 Total: -31.48 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -1.18 Total: -28.22 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 4.10 SS G_CDS: -2.35 Total: 1.75 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.53 -6.83 -40.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010692430.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.974 kcal (2) G-P(sol) polarization free energy of solvation -33.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds