Wall clock time and date at job start Tue Mar 31 2020 06:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35893 * 117.00163 * 2 1 4 4 C 1.38768 * 119.92627 * 0.02562 * 3 2 1 5 5 C 1.37865 * 120.15244 * 179.97438 * 4 3 2 6 6 C 1.39671 * 119.99947 * 359.97438 * 5 4 3 7 7 C 1.47648 * 120.07587 * 179.97438 * 6 5 4 8 8 N 1.30442 * 124.73668 * 359.97438 * 7 6 5 9 9 C 1.30566 * 117.30251 * 180.02562 * 8 7 6 10 10 C 1.50698 * 122.99405 * 180.02562 * 9 8 7 11 11 C 1.37078 * 114.01556 * 0.02562 * 9 8 7 12 12 C 1.46258 * 126.12815 * 180.02562 * 11 9 8 13 13 O 1.21682 * 119.99934 * 0.02562 * 12 11 9 14 14 O 1.34907 * 120.00426 * 179.97438 * 12 11 9 15 15 C 1.34844 * 117.00302 * 179.97438 * 14 12 11 16 16 H 1.08000 * 120.00018 * 0.02562 * 15 14 12 17 17 C 1.38789 * 119.99982 * 179.97438 * 15 14 12 18 18 N 1.31433 * 119.99963 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99796 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47260 * 60.00397 * 19 17 15 21 21 H 1.48504 * 109.46873 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47170 * 300.00089 * 19 17 15 23 23 S 1.70913 * 124.74415 * 179.69873 * 7 6 5 24 24 C 1.39683 * 119.85287 * 359.97438 * 6 5 4 25 25 C 1.38206 * 119.85103 * 0.02562 * 24 6 5 26 26 O 1.36001 * 119.99965 * 179.97438 * 25 24 6 27 27 C 1.42901 * 117.00140 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.47034 * 300.00002 * 1 2 3 29 29 H 1.09001 * 109.46907 * 60.00170 * 1 2 3 30 30 H 1.08997 * 109.47071 * 180.02562 * 1 2 3 31 31 H 1.07998 * 119.92122 * 0.25505 * 4 3 2 32 32 H 1.08005 * 119.99959 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.47204 * 90.02817 * 10 9 8 34 34 H 1.08994 * 109.47736 * 210.02817 * 10 9 8 35 35 H 1.09004 * 109.46800 * 330.03012 * 10 9 8 36 36 H 0.97002 * 119.99731 * 179.97438 * 18 17 15 37 37 H 1.08003 * 120.07828 * 180.02562 * 24 6 5 38 38 H 1.08993 * 109.47043 * 59.99986 * 27 26 25 39 39 H 1.08999 * 109.46539 * 180.02562 * 27 26 25 40 40 H 1.08999 * 109.47114 * 299.99898 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2887 2.3737 0.0005 5 6 1.9098 3.6045 0.0011 6 6 3.3043 3.6830 0.0016 7 6 3.9712 5.0003 0.0016 8 7 3.3505 6.1476 0.0007 9 6 4.0860 7.2264 0.0003 10 6 3.5040 8.6165 -0.0002 11 6 5.4348 6.9820 0.0004 12 6 6.4940 7.9907 0.0006 13 8 6.2078 9.1733 0.0012 14 8 7.7882 7.6099 0.0013 15 6 8.7147 8.5897 0.0009 16 1 8.4061 9.6246 0.0005 17 6 10.0648 8.2681 0.0021 18 7 10.4403 7.0085 0.0030 19 14 11.3482 9.6254 0.0022 20 1 11.1788 10.4667 1.2142 21 1 12.7056 9.0231 0.0029 22 1 11.1804 10.4654 -1.2108 23 16 5.6641 5.2350 0.0096 24 6 4.0666 2.5126 0.0022 25 6 3.4376 1.2819 0.0016 26 8 4.1769 0.1404 0.0016 27 6 5.5982 0.2880 0.0016 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.2103 2.3143 0.0051 32 1 1.3180 4.5080 0.0011 33 1 3.3641 8.9522 1.0273 34 1 4.1843 9.2951 -0.5147 35 1 2.5425 8.6075 -0.5137 36 1 11.3839 6.7838 0.0034 37 1 5.1451 2.5691 0.0030 38 1 5.9065 0.8365 0.8915 39 1 6.0657 -0.6967 0.0012 40 1 5.9066 0.8366 -0.8884 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000010692430.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:55 Heat of formation + Delta-G solvation = -99.413043 kcal Electronic energy + Delta-G solvation = -27008.768564 eV Core-core repulsion = 22881.260269 eV Total energy + Delta-G solvation = -4127.508295 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 349.086 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.75341 -41.36130 -40.51042 -39.50135 -38.07194 -37.27049 -34.38063 -33.53906 -31.61590 -31.10843 -29.93944 -28.40655 -28.10385 -27.37060 -25.90230 -23.87073 -23.08329 -22.78003 -20.40587 -20.16377 -19.81258 -19.02144 -18.19334 -18.04020 -17.40833 -17.12537 -16.91195 -16.89466 -16.30178 -16.17836 -15.93434 -15.80387 -15.79665 -15.47021 -14.79454 -14.54745 -14.06455 -14.00262 -13.77863 -13.64471 -13.39074 -13.31305 -13.21844 -13.11022 -12.52780 -12.45022 -12.34201 -12.17276 -12.14938 -12.14290 -12.10329 -12.08844 -11.24843 -10.91305 -10.77725 -10.66997 -10.25571 -9.72096 -8.77271 -8.60814 -6.37235 -1.24758 0.01893 0.12287 0.26509 0.52711 1.28100 1.33037 1.47080 1.49295 1.96000 2.04218 2.21047 2.26035 2.56280 2.59359 2.76319 2.94572 3.61310 3.68497 3.85944 3.92104 4.03932 4.14023 4.34510 4.36682 4.44191 4.47103 4.49111 4.55556 4.64402 4.69052 4.73671 4.80710 4.82061 4.92019 5.07961 5.12086 5.25507 5.34235 5.43175 5.74469 5.99918 6.40322 6.48071 6.49597 6.82759 7.61089 8.59232 Molecular weight = 349.09amu Principal moments of inertia in cm(-1) A = 0.016354 B = 0.002615 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.676783 B =10703.541613 C =12389.463363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.322 6.322 3 C 0.118 3.882 4 C -0.166 4.166 5 C -0.056 4.056 6 C -0.050 4.050 7 C 0.089 3.911 8 N -0.478 5.478 9 C 0.151 3.849 10 C -0.081 4.081 11 C -0.307 4.307 12 C 0.471 3.529 13 O -0.556 6.556 14 O -0.232 6.232 15 C -0.417 4.417 16 H 0.089 0.911 17 C -0.002 4.002 18 N -0.895 5.895 19 Si 1.021 2.979 20 H -0.260 1.260 21 H -0.259 1.259 22 H -0.260 1.260 23 S 0.233 5.767 24 C -0.152 4.152 25 C 0.088 3.912 26 O -0.319 6.319 27 C 0.013 3.987 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.119 0.881 31 H 0.177 0.823 32 H 0.150 0.850 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.282 0.718 37 H 0.143 0.857 38 H 0.061 0.939 39 H 0.125 0.875 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.986 -15.427 0.009 23.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.235 6.235 3 C 0.070 3.930 4 C -0.184 4.184 5 C -0.078 4.078 6 C -0.054 4.054 7 C -0.180 4.180 8 N -0.193 5.193 9 C 0.010 3.990 10 C -0.140 4.140 11 C -0.429 4.429 12 C 0.319 3.681 13 O -0.455 6.455 14 O -0.140 6.140 15 C -0.493 4.493 16 H 0.107 0.893 17 C -0.203 4.203 18 N -0.532 5.532 19 Si 0.839 3.161 20 H -0.185 1.185 21 H -0.183 1.183 22 H -0.185 1.185 23 S 0.496 5.504 24 C -0.173 4.173 25 C 0.042 3.958 26 O -0.233 6.233 27 C -0.082 4.082 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.137 0.863 31 H 0.195 0.805 32 H 0.168 0.832 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.118 0.882 36 H 0.091 0.909 37 H 0.160 0.840 38 H 0.080 0.920 39 H 0.143 0.857 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.435 -16.389 0.019 23.929 hybrid contribution 0.631 1.823 0.012 1.929 sum -16.804 -14.566 0.032 22.239 Atomic orbital electron populations 1.23479 0.75886 1.05946 1.02855 1.86149 1.23800 1.25521 1.88075 1.18660 0.89008 0.86220 0.99070 1.21320 1.01805 0.89551 1.05767 1.21168 0.91969 0.98856 0.95798 1.17542 0.93942 0.86423 1.07466 1.25612 0.95168 0.96284 1.00953 1.66310 1.37660 0.96397 1.18950 1.21181 0.86361 0.97091 0.94411 1.20616 1.01769 0.87351 1.04216 1.24903 0.96778 0.97167 1.24080 1.19629 0.83069 0.86943 0.78444 1.90604 1.83594 1.18915 1.52416 1.83956 1.13934 1.39715 1.76439 1.21527 0.85284 0.87834 1.54614 0.89342 1.26612 0.98456 1.00813 0.94449 1.70059 1.18601 1.18885 1.45606 0.84646 0.75527 0.76032 0.79934 1.18450 1.18257 1.18453 1.83926 1.04330 0.98234 1.63919 1.21091 1.00560 0.90250 1.05421 1.18112 0.89069 0.85694 1.02893 1.86152 1.20411 1.27655 1.89064 1.23400 0.76857 1.05792 1.02119 0.91026 0.91017 0.86312 0.80549 0.83238 0.89321 0.90242 0.88168 0.90874 0.83974 0.92038 0.85672 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.22 16 2 O -0.32 -6.09 10.27 -78.32 -0.80 -6.89 16 3 C 0.12 2.45 6.71 22.66 0.15 2.60 16 4 C -0.17 -2.79 9.01 22.31 0.20 -2.58 16 5 C -0.06 -1.19 9.66 22.53 0.22 -0.97 16 6 C -0.05 -1.30 5.87 -20.10 -0.12 -1.42 16 7 C 0.09 2.86 7.12 87.39 0.62 3.49 16 8 N -0.48 -16.24 10.01 -179.87 -1.80 -18.04 16 9 C 0.15 5.73 6.83 42.47 0.29 6.02 16 10 C -0.08 -2.66 9.71 71.24 0.69 -1.97 16 11 C -0.31 -13.60 6.51 24.08 0.16 -13.44 16 12 C 0.47 25.37 7.85 69.91 0.55 25.91 16 13 O -0.56 -30.89 13.57 19.24 0.26 -30.62 16 14 O -0.23 -14.01 9.63 9.65 0.09 -13.91 16 15 C -0.42 -25.30 9.65 67.95 0.66 -24.64 16 16 H 0.09 5.37 6.86 -2.91 -0.02 5.35 16 17 C 0.00 -0.11 5.50 84.88 0.47 0.35 16 18 N -0.90 -52.15 13.67 21.63 0.30 -51.86 16 19 Si 1.02 42.78 29.55 68.60 2.03 44.80 16 20 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 21 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 22 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 23 S 0.23 8.57 21.85 -56.49 -1.23 7.34 16 24 C -0.15 -3.71 8.55 22.61 0.19 -3.52 16 25 C 0.09 2.08 6.69 22.53 0.15 2.23 16 26 O -0.32 -7.36 10.27 -79.54 -0.82 -8.18 16 27 C 0.01 0.21 9.81 113.37 1.11 1.32 16 28 H 0.07 0.43 7.65 -2.39 -0.02 0.41 16 29 H 0.07 0.43 7.66 -2.39 -0.02 0.41 16 30 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.18 1.63 6.27 -2.91 -0.02 1.62 16 32 H 0.15 2.96 7.78 -2.91 -0.02 2.93 16 33 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.08 3.01 6.05 -2.39 -0.01 2.99 16 35 H 0.10 2.64 8.14 -2.38 -0.02 2.62 16 36 H 0.28 14.83 8.31 -92.71 -0.77 14.05 16 37 H 0.14 3.30 5.44 -2.91 -0.02 3.28 16 38 H 0.06 0.99 7.66 -2.39 -0.02 0.97 16 39 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.06 0.99 7.66 -2.39 -0.02 0.97 16 Total: -1.00 -76.84 363.34 5.58 -71.26 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 1.11 Total: 11.51 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: 6.45 Total: -5.40 kcal Atomic # 7 Polarization: -68.40 SS G_CDS: -1.51 Total: -69.90 kcal Atomic # 8 Polarization: -58.34 SS G_CDS: -1.27 Total: -59.61 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 16 Polarization: 8.57 SS G_CDS: -1.23 Total: 7.34 kcal Total: -76.84 5.58 -71.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010692430.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.156 kcal (2) G-P(sol) polarization free energy of solvation -76.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds