Wall clock time and date at job start Tue Mar 31 2020 05:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86796 * 120.00136 * 2 1 4 4 H 1.48506 * 109.46991 * 274.97980 * 3 2 1 5 5 H 1.48503 * 109.47341 * 34.97627 * 3 2 1 6 6 H 1.48497 * 109.47440 * 154.97837 * 3 2 1 7 7 C 1.39904 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99912 * 147.61319 * 7 2 1 9 9 C 1.41155 * 120.00262 * 327.62065 * 7 2 1 10 10 C 1.40866 * 120.16472 * 158.00315 * 9 7 2 11 11 C 1.36372 * 119.82575 * 180.02562 * 10 9 7 12 12 C 1.39481 * 120.17231 * 0.03162 * 11 10 9 13 13 N 1.39237 * 119.83453 * 179.97438 * 12 11 10 14 14 C 1.34781 * 119.99846 * 142.47578 * 13 12 11 15 15 O 1.21279 * 119.99967 * 3.00603 * 14 13 12 16 16 C 1.50695 * 119.99750 * 183.00610 * 14 13 12 17 17 N 1.46504 * 109.47182 * 179.97438 * 16 14 13 18 18 C 1.39845 * 120.00104 * 180.02562 * 17 16 14 19 19 C 1.38850 * 120.07422 * 359.72622 * 18 17 16 20 20 C 1.38153 * 119.97231 * 179.77063 * 19 18 17 21 21 C 1.38263 * 120.11729 * 0.52741 * 20 19 18 22 22 C 1.38389 * 120.15248 * 359.70161 * 21 20 19 23 23 Cl 1.73601 * 119.99010 * 180.02562 * 22 21 20 24 24 C 1.38388 * 120.02562 * 0.04774 * 22 21 20 25 25 F 1.35098 * 120.06574 * 179.97438 * 24 22 21 26 26 C 1.39485 * 120.33072 * 0.24612 * 12 11 10 27 27 C 1.36371 * 120.16594 * 359.44715 * 26 12 11 28 28 H 0.97004 * 120.00040 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.08671 * 0.02562 * 10 9 7 30 30 H 1.08008 * 119.91366 * 180.02562 * 11 10 9 31 31 H 0.96996 * 119.99962 * 322.20313 * 13 12 11 32 32 H 1.09000 * 109.47762 * 300.00213 * 16 14 13 33 33 H 1.09001 * 109.47163 * 60.00523 * 16 14 13 34 34 H 0.96997 * 119.99879 * 0.02562 * 17 16 14 35 35 H 1.08002 * 120.01258 * 0.02562 * 19 18 17 36 36 H 1.07996 * 119.93896 * 180.23448 * 20 19 18 37 37 H 1.08002 * 119.92304 * 179.72894 * 21 20 19 38 38 H 1.07998 * 119.91137 * 179.73003 * 26 12 11 39 39 H 1.08004 * 120.08150 * 180.25804 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3850 2.1071 -1.3949 5 1 1.4968 2.6200 0.8026 6 1 3.5890 1.4121 0.5922 7 6 2.0083 -1.2116 0.0005 8 1 2.9623 -1.2845 -0.5004 9 6 1.4672 -2.3387 0.6557 10 6 1.8862 -3.6349 0.2969 11 6 1.3585 -4.7190 0.9340 12 6 0.4057 -4.5470 1.9380 13 7 -0.1288 -5.6589 2.5836 14 6 -0.3947 -5.6084 3.9039 15 8 -0.2197 -4.5777 4.5187 16 6 -0.9095 -6.8326 4.6162 17 7 -1.1179 -6.5219 6.0326 18 6 -1.5948 -7.5081 6.9019 19 6 -1.8766 -8.7806 6.4231 20 6 -2.3431 -9.7546 7.2847 21 6 -2.5404 -9.4617 8.6215 22 6 -2.2657 -8.1938 9.1031 23 17 -2.5143 -7.8308 10.7825 24 6 -1.7932 -7.2149 8.2465 25 9 -1.5253 -5.9767 8.7158 26 6 -0.0184 -3.2670 2.2948 27 6 0.5048 -2.1730 1.6710 28 1 -0.4850 0.8401 -0.0004 29 1 2.6235 -3.7697 -0.4807 30 1 1.6791 -5.7134 0.6603 31 1 -0.3136 -6.4684 2.0822 32 1 -1.8539 -7.1430 4.1691 33 1 -0.1818 -7.6390 4.5248 34 1 -0.9252 -5.6322 6.3675 35 1 -1.7272 -9.0100 5.3784 36 1 -2.5585 -10.7453 6.9124 37 1 -2.9093 -10.2243 9.2913 38 1 -0.7597 -3.1418 3.0702 39 1 0.1785 -1.1823 1.9512 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011624314.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:34 Heat of formation + Delta-G solvation = -35.566468 kcal Electronic energy + Delta-G solvation = -25931.464713 eV Core-core repulsion = 21778.939663 eV Total energy + Delta-G solvation = -4152.525049 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.078 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -48.98795 -40.10163 -39.36265 -37.49536 -36.92634 -35.44861 -34.56193 -33.15811 -30.78490 -30.44917 -29.56797 -29.14575 -27.05779 -24.81247 -23.13387 -22.41519 -21.49052 -21.06306 -19.76650 -18.54378 -17.67829 -17.43035 -17.01753 -16.60207 -16.14888 -16.06969 -15.54237 -15.24453 -15.03830 -14.84300 -14.65571 -14.07507 -13.74437 -13.51748 -13.32284 -13.23335 -12.89836 -12.71274 -12.42842 -12.17220 -12.05538 -11.90696 -11.72522 -11.40668 -11.26381 -11.22767 -11.16908 -10.72603 -10.46266 -10.17584 -9.75494 -9.56379 -9.08517 -9.01630 -8.99062 -7.80586 -7.62211 -7.25439 -6.93745 -4.35463 0.70036 1.00312 1.70746 2.43200 2.84160 2.88148 3.01299 3.03321 3.07720 3.22093 3.25703 3.65150 3.84600 3.89617 4.43462 4.47423 4.56018 4.77984 4.89775 4.98491 5.03795 5.07949 5.51023 5.56322 5.59904 5.80875 6.00240 6.06195 6.17702 6.30727 6.65942 6.76899 6.89878 6.94473 7.01220 7.18814 7.36786 7.47430 7.56281 7.81994 7.95846 8.07733 8.18282 8.48788 8.58142 8.76485 8.90315 9.95833 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.021641 B = 0.001854 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.537655 B =15100.130018 C =16115.451899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.087 3.913 3 Si 0.897 3.103 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.463 4.463 8 H 0.083 0.917 9 C 0.113 3.887 10 C -0.223 4.223 11 C -0.091 4.091 12 C -0.029 4.029 13 N -0.640 5.640 14 C 0.490 3.510 15 O -0.526 6.526 16 C 0.106 3.894 17 N -0.723 5.723 18 C 0.209 3.791 19 C -0.176 4.176 20 C -0.065 4.065 21 C -0.151 4.151 22 C -0.023 4.023 23 Cl -0.054 7.054 24 C 0.027 3.973 25 F -0.129 7.129 26 C -0.072 4.072 27 C -0.175 4.175 28 H 0.285 0.715 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.396 0.604 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.418 0.582 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.101 0.899 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.115 -18.338 11.655 22.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.136 4.136 3 Si 0.721 3.279 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.490 4.490 8 H 0.101 0.899 9 C 0.110 3.890 10 C -0.243 4.243 11 C -0.111 4.111 12 C -0.121 4.121 13 N -0.283 5.283 14 C 0.276 3.724 15 O -0.403 6.403 16 C -0.022 4.022 17 N -0.355 5.355 18 C 0.102 3.898 19 C -0.200 4.200 20 C -0.084 4.084 21 C -0.172 4.172 22 C -0.051 4.051 23 Cl -0.025 7.025 24 C 0.002 3.998 25 F -0.107 7.107 26 C -0.092 4.092 27 C -0.194 4.194 28 H 0.096 0.904 29 H 0.114 0.886 30 H 0.108 0.892 31 H 0.229 0.771 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.258 0.742 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.119 0.881 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.178 -17.396 12.030 22.034 hybrid contribution 0.292 0.956 0.025 1.000 sum -5.886 -16.440 12.055 21.218 Atomic orbital electron populations 1.69936 1.08150 1.30091 1.30495 1.25972 0.94391 1.01675 0.91538 0.86482 0.81524 0.80725 0.79215 1.19407 1.19788 1.18037 1.19526 1.05313 0.93813 1.30350 0.89921 1.17613 0.89848 0.91819 0.89698 1.20472 1.07043 0.92285 1.04500 1.20043 0.96177 0.97342 0.97492 1.17008 1.05367 0.85672 1.04044 1.42773 1.62205 1.15897 1.07435 1.20303 0.79696 0.89602 0.82819 1.90719 1.52190 1.31589 1.65803 1.21108 1.02117 0.96893 0.82094 1.44393 1.71179 1.13614 1.06284 1.17668 0.94332 0.90250 0.87532 1.20695 1.06978 0.91147 1.01151 1.20897 0.96194 0.99187 0.92103 1.20706 1.05494 0.94499 0.96495 1.20733 1.03714 0.94837 0.85843 1.98386 1.95115 1.94993 1.13998 1.16764 1.10757 0.81555 0.90723 1.91512 1.92115 1.38579 1.88523 1.20368 0.98789 0.91425 0.98585 1.20714 1.02763 0.97006 0.98948 0.90429 0.88569 0.89152 0.77060 0.89057 0.88977 0.74178 0.84449 0.84444 0.84446 0.88134 0.87550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.31 11.77 55.55 0.65 -18.66 16 2 C 0.09 2.13 4.77 -17.34 -0.08 2.05 16 3 Si 0.90 18.12 29.66 -169.99 -5.04 13.08 16 4 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.46 -11.98 8.94 -37.85 -0.34 -12.32 16 8 H 0.08 2.05 8.02 -52.49 -0.42 1.63 16 9 C 0.11 2.96 5.57 -106.80 -0.60 2.36 16 10 C -0.22 -5.26 9.74 -39.26 -0.38 -5.64 16 11 C -0.09 -1.91 9.90 -39.79 -0.39 -2.30 16 12 C -0.03 -0.62 6.25 -83.57 -0.52 -1.14 16 13 N -0.64 -10.14 5.30 -9.74 -0.05 -10.20 16 14 C 0.49 7.68 7.71 -10.99 -0.08 7.60 16 15 O -0.53 -10.69 13.30 5.56 0.07 -10.62 16 16 C 0.11 1.10 5.40 -5.19 -0.03 1.07 16 17 N -0.72 -8.76 5.71 -59.74 -0.34 -9.10 16 18 C 0.21 2.28 6.66 -83.68 -0.56 1.73 16 19 C -0.18 -1.42 9.31 -39.39 -0.37 -1.79 16 20 C -0.06 -0.44 10.04 -39.60 -0.40 -0.83 16 21 C -0.15 -1.19 9.82 -39.52 -0.39 -1.58 16 22 C -0.02 -0.24 6.32 -39.47 -0.25 -0.49 16 23 Cl -0.05 -0.55 28.61 -51.86 -1.48 -2.03 16 24 C 0.03 0.32 7.28 -39.23 -0.29 0.04 16 25 F -0.13 -1.79 16.21 2.25 0.04 -1.75 16 26 C -0.07 -1.74 8.59 -39.79 -0.34 -2.08 16 27 C -0.17 -4.57 8.74 -39.26 -0.34 -4.91 16 28 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 29 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 30 H 0.09 1.58 8.06 -52.48 -0.42 1.16 16 31 H 0.40 4.56 8.82 -40.82 -0.36 4.20 16 32 H 0.09 0.72 7.94 -51.93 -0.41 0.31 16 33 H 0.09 0.73 7.96 -51.93 -0.41 0.32 16 34 H 0.42 6.02 6.93 -40.82 -0.28 5.73 16 35 H 0.14 0.80 6.74 -52.49 -0.35 0.45 16 36 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 37 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.10 2.44 6.46 -52.49 -0.34 2.10 16 39 H 0.11 2.88 6.52 -52.48 -0.34 2.53 16 LS Contribution 356.83 15.07 5.38 5.38 Total: -1.00 -30.24 356.83 -9.88 -40.13 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -3.75 Total: 12.01 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -5.36 Total: -18.24 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.26 Total: -37.95 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.07 Total: -10.62 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.04 Total: 13.08 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.48 Total: -2.03 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.24 -9.88 -40.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011624314.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.559 kcal (2) G-P(sol) polarization free energy of solvation -30.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds