Wall clock time and date at job start Tue Mar 31 2020 05:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 120.00319 * 2 1 4 4 H 1.48494 * 109.47391 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46722 * 300.00137 * 3 2 1 6 6 H 1.48504 * 109.46881 * 59.99639 * 3 2 1 7 7 C 1.37882 * 119.99618 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99506 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00298 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47232 * 180.02562 * 9 7 2 11 11 C 1.34261 * 125.13680 * 125.27667 * 10 9 7 12 12 C 1.38252 * 107.85680 * 180.12026 * 11 10 9 13 13 C 1.46707 * 126.83796 * 179.89769 * 12 11 10 14 14 C 1.35279 * 120.00322 * 345.87971 * 13 12 11 15 15 C 1.41522 * 120.00361 * 179.72697 * 14 13 12 16 16 O 1.21675 * 119.99596 * 0.27892 * 15 14 13 17 17 O 1.34958 * 119.99952 * 180.27992 * 15 14 13 18 18 C 1.46814 * 106.31857 * 359.62855 * 12 11 10 19 19 C 1.47979 * 126.52040 * 180.24559 * 18 12 11 20 20 C 1.38451 * 120.35662 * 312.06606 * 19 18 12 21 21 C 1.38994 * 120.67746 * 179.72000 * 20 19 18 22 22 C 1.36235 * 121.14799 * 0.55637 * 21 20 19 23 23 C 1.40538 * 120.08261 * 359.72430 * 22 21 20 24 24 C 1.40584 * 121.18075 * 179.97438 * 23 22 21 25 25 C 1.36119 * 119.65710 * 180.02562 * 24 23 22 26 26 C 1.39321 * 120.95948 * 0.02562 * 25 24 23 27 27 C 1.36217 * 120.94114 * 359.97438 * 26 25 24 28 28 C 1.40219 * 119.68414 * 0.02562 * 27 26 25 29 29 N 1.31479 * 106.95657 * 0.22686 * 18 12 11 30 30 H 0.96998 * 119.99939 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.47220 * 59.99895 * 9 7 2 32 32 H 1.09003 * 109.47471 * 300.00544 * 9 7 2 33 33 H 1.08002 * 126.07650 * 359.97438 * 11 10 9 34 34 H 1.08005 * 119.99830 * 165.89050 * 13 12 11 35 35 H 1.08005 * 119.99847 * 0.02562 * 14 13 12 36 36 H 0.96701 * 113.99481 * 180.02562 * 17 15 14 37 37 H 1.07997 * 119.66126 * 359.96838 * 20 19 18 38 38 H 1.08000 * 119.42616 * 180.25684 * 21 20 19 39 39 H 1.08003 * 119.96076 * 179.74606 * 22 21 20 40 40 H 1.07996 * 120.16882 * 359.97438 * 24 23 22 41 41 H 1.08001 * 119.51833 * 179.97438 * 25 24 23 42 42 H 1.08002 * 119.52859 * 180.02562 * 26 25 24 43 43 H 1.08004 * 120.15556 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.2231 -4.6121 0.8958 12 6 3.2629 -5.4599 0.5621 13 6 3.6598 -6.6845 1.2659 14 6 3.1823 -6.9368 2.5062 15 6 3.5606 -8.1209 3.1828 16 8 4.3193 -8.9095 2.6509 17 8 3.0798 -8.3752 4.4179 18 6 3.8867 -4.8943 -0.6405 19 6 5.0418 -5.4517 -1.3787 20 6 6.1801 -5.8507 -0.6989 21 6 7.2666 -6.3805 -1.3850 22 6 7.2479 -6.5119 -2.7408 23 6 6.1152 -6.1143 -3.4715 24 6 6.0712 -6.2390 -4.8711 25 6 4.9583 -5.8436 -5.5479 26 6 3.8594 -5.3154 -4.8739 27 6 3.8678 -5.1804 -3.5184 28 6 4.9971 -5.5771 -2.7881 29 7 3.2236 -3.7984 -0.9371 30 1 -0.4850 0.8400 0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6246 -2.5571 0.8896 33 1 1.5485 -4.7312 1.7308 34 1 4.3333 -7.3845 0.7938 35 1 2.5086 -6.2369 2.9782 36 1 3.3943 -9.2065 4.7989 37 1 6.2227 -5.7528 0.3758 38 1 8.1428 -6.6891 -0.8340 39 1 8.1045 -6.9223 -3.2548 40 1 6.9163 -6.6456 -5.4066 41 1 4.9271 -5.9400 -6.6232 42 1 2.9881 -5.0094 -5.4339 43 1 3.0087 -4.7697 -3.0088 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012541689.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:31 Heat of formation + Delta-G solvation = 33.495845 kcal Electronic energy + Delta-G solvation = -28671.777175 eV Core-core repulsion = 24648.140047 eV Total energy + Delta-G solvation = -4023.637128 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.126 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.82925 -40.07975 -39.87562 -36.42966 -36.06456 -34.44683 -33.62575 -33.05078 -31.22741 -30.26881 -29.26745 -29.18388 -27.15592 -24.61864 -24.03928 -23.02114 -22.86980 -21.76776 -20.98693 -19.55175 -18.75371 -18.10295 -17.45527 -16.95810 -16.77356 -16.36492 -16.14578 -15.78610 -15.44834 -14.78626 -14.61406 -14.34390 -14.12500 -13.83563 -13.64082 -13.51340 -13.40954 -13.27432 -12.76450 -12.68209 -12.39450 -12.02089 -11.94768 -11.64520 -11.52167 -11.30513 -11.10456 -10.98548 -10.95884 -10.86980 -10.58557 -10.42935 -10.35433 -10.12402 -9.97149 -9.66122 -8.93648 -8.73547 -8.56479 -7.81346 -7.50108 -6.39751 -4.46007 0.47003 0.89574 1.08605 1.96435 2.47971 2.80746 3.03515 3.14323 3.15919 3.22786 3.30271 3.47373 3.54462 4.18403 4.20873 4.45570 4.74300 4.83484 4.92874 4.98002 5.00259 5.10338 5.14923 5.27874 5.36308 5.41834 5.43968 5.51366 5.55072 5.64644 5.79279 5.86465 6.03521 6.16403 6.22264 6.28712 6.40499 6.41462 6.48399 6.52010 6.59527 6.61058 6.71087 6.77104 6.88133 6.97166 7.05515 7.43505 7.64439 7.65863 8.00626 8.17795 8.61438 9.21207 10.69142 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.006007 B = 0.004219 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4660.114359 B = 6635.519439 C =10203.099456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.066 3.934 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.071 0.929 9 C 0.249 3.751 10 N -0.310 5.310 11 C 0.104 3.896 12 C -0.266 4.266 13 C 0.097 3.903 14 C -0.277 4.277 15 C 0.520 3.480 16 O -0.541 6.541 17 O -0.512 6.512 18 C 0.113 3.887 19 C 0.014 3.986 20 C -0.098 4.098 21 C -0.111 4.111 22 C -0.107 4.107 23 C -0.050 4.050 24 C -0.115 4.115 25 C -0.113 4.113 26 C -0.124 4.124 27 C -0.087 4.087 28 C -0.033 4.033 29 N -0.253 5.253 30 H 0.269 0.731 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.181 0.819 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.402 0.598 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.747 -14.458 -2.221 17.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.572 4.572 8 H 0.089 0.911 9 C 0.132 3.868 10 N -0.085 5.085 11 C -0.049 4.049 12 C -0.278 4.278 13 C 0.077 3.923 14 C -0.297 4.297 15 C 0.370 3.630 16 O -0.435 6.435 17 O -0.322 6.322 18 C -0.054 4.054 19 C 0.012 3.988 20 C -0.117 4.117 21 C -0.129 4.129 22 C -0.125 4.125 23 C -0.050 4.050 24 C -0.133 4.133 25 C -0.131 4.131 26 C -0.142 4.142 27 C -0.105 4.105 28 C -0.034 4.034 29 N -0.073 5.073 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.198 0.802 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.258 0.742 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.342 -12.937 -3.348 15.753 hybrid contribution 0.401 -0.083 0.944 1.029 sum 8.743 -13.019 -2.404 15.866 Atomic orbital electron populations 1.69915 1.06069 1.27838 1.49157 1.24926 0.94990 0.99640 0.94228 0.86257 0.80118 0.82240 0.77879 1.19446 1.20538 1.20624 1.21211 0.94045 0.89031 1.52928 0.91079 1.19983 0.85634 0.81245 0.99896 1.49352 1.22767 1.18848 1.17505 1.23146 0.98261 0.88423 0.95100 1.19998 1.04360 1.01417 1.02018 1.21700 0.89196 0.90813 0.90606 1.20774 1.11923 0.99403 0.97593 1.19623 0.77432 0.86588 0.79353 1.90917 1.35767 1.49463 1.67340 1.85106 1.69346 1.45588 1.32135 1.21762 0.95944 0.93724 0.93970 1.17781 0.91494 0.98511 0.90990 1.21149 0.92106 0.98220 1.00254 1.20709 0.98328 0.99445 0.94413 1.21022 0.97170 1.00075 0.94282 1.17995 0.93788 0.99505 0.93669 1.20949 0.98586 1.01093 0.92712 1.20842 0.93631 0.98749 0.99859 1.20887 0.98729 1.00045 0.94566 1.21280 0.97845 0.97036 0.94335 1.17952 0.94303 0.99002 0.92105 1.77536 1.00591 1.16139 1.13051 0.92162 0.93039 0.92167 0.80209 0.84994 0.84963 0.74214 0.85443 0.85612 0.85633 0.85733 0.86188 0.86014 0.84721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.01 13.29 55.43 0.74 -23.27 16 2 C 0.07 1.72 5.46 -17.81 -0.10 1.62 16 3 Si 0.91 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.53 -13.92 9.21 -34.44 -0.32 -14.23 16 8 H 0.07 1.94 7.81 -52.48 -0.41 1.53 16 9 C 0.25 5.74 6.21 -5.20 -0.03 5.71 16 10 N -0.31 -6.32 3.62 -61.93 -0.22 -6.54 16 11 C 0.10 1.74 10.77 -16.48 -0.18 1.56 16 12 C -0.27 -4.31 6.22 -103.01 -0.64 -4.95 16 13 C 0.10 1.37 9.07 -37.22 -0.34 1.04 16 14 C -0.28 -3.65 9.46 -39.39 -0.37 -4.03 16 15 C 0.52 6.96 8.04 31.98 0.26 7.21 16 16 O -0.54 -8.54 16.84 -19.40 -0.33 -8.87 16 17 O -0.51 -5.48 13.54 -41.20 -0.56 -6.04 16 18 C 0.11 2.03 6.15 -80.56 -0.50 1.53 16 19 C 0.01 0.23 5.80 -104.56 -0.61 -0.38 16 20 C -0.10 -1.34 9.03 -39.22 -0.35 -1.69 16 21 C -0.11 -1.28 9.93 -40.02 -0.40 -1.67 16 22 C -0.11 -1.22 9.75 -39.44 -0.38 -1.61 16 23 C -0.05 -0.67 5.74 -106.85 -0.61 -1.28 16 24 C -0.12 -1.33 9.77 -39.46 -0.39 -1.71 16 25 C -0.11 -1.30 9.95 -39.94 -0.40 -1.70 16 26 C -0.12 -1.66 9.95 -39.91 -0.40 -2.06 16 27 C -0.09 -1.38 9.28 -39.57 -0.37 -1.75 16 28 C -0.03 -0.52 5.76 -106.59 -0.61 -1.13 16 29 N -0.25 -5.26 10.77 34.57 0.37 -4.89 16 30 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.06 1.35 8.05 -51.93 -0.42 0.93 16 33 H 0.18 2.37 7.48 -52.49 -0.39 1.98 16 34 H 0.13 1.86 7.16 -52.48 -0.38 1.48 16 35 H 0.13 1.59 7.12 -52.48 -0.37 1.21 16 36 H 0.40 2.50 8.98 45.56 0.41 2.91 16 37 H 0.13 1.63 7.93 -52.49 -0.42 1.21 16 38 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 39 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 40 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 41 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 42 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 43 H 0.14 2.37 6.17 -52.48 -0.32 2.05 16 LS Contribution 381.90 15.07 5.76 5.76 Total: -1.00 -31.16 381.90 -9.97 -41.13 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -3.97 Total: 6.67 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -6.73 Total: -19.52 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: 0.88 Total: -34.71 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.88 Total: -14.91 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.16 -9.97 -41.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012541689.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.624 kcal (2) G-P(sol) polarization free energy of solvation -31.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds