Wall clock time and date at job start Tue Mar 31 2020 06:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38368 * 119.93030 * 2 1 4 4 C 1.38330 * 120.28951 * 179.97438 * 3 2 1 5 5 C 1.37985 * 120.14336 * 359.71796 * 4 3 2 6 6 C 1.39537 * 119.85465 * 0.53518 * 5 4 3 7 7 C 1.47844 * 120.14392 * 179.74301 * 6 5 4 8 8 N 1.31234 * 126.38135 * 179.74714 * 7 6 5 9 9 N 1.28665 * 109.25280 * 179.97438 * 8 7 6 10 10 C 1.30378 * 109.52184 * 0.02562 * 9 8 7 11 11 C 1.50706 * 126.18630 * 179.97438 * 10 9 8 12 12 H 1.08999 * 109.47407 * 195.02515 * 11 10 9 13 13 C 1.52997 * 109.46728 * 75.02618 * 11 10 9 14 14 N 1.46499 * 109.46956 * 315.02588 * 11 10 9 15 15 C 1.38853 * 119.99769 * 204.99391 * 14 11 10 16 16 C 1.39575 * 119.84141 * 180.02562 * 15 14 11 17 17 C 1.36332 * 120.16193 * 179.97438 * 16 15 14 18 18 C 1.40888 * 119.83655 * 359.97438 * 17 16 15 19 19 C 1.41142 * 120.15522 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99772 * 154.52279 * 19 18 17 21 21 C 1.39860 * 120.00005 * 334.51946 * 19 18 17 22 22 N 1.30910 * 119.99878 * 343.06759 * 21 19 18 23 23 Si 1.86800 * 120.00124 * 163.07080 * 21 19 18 24 24 H 1.48496 * 109.47400 * 89.99836 * 23 21 19 25 25 H 1.48501 * 109.47032 * 209.99788 * 23 21 19 26 26 H 1.48504 * 109.47094 * 329.99605 * 23 21 19 27 27 C 1.40891 * 119.69011 * 0.27856 * 18 17 16 28 28 C 1.36337 * 119.83258 * 359.43472 * 27 18 17 29 29 O 1.34409 * 107.62886 * 0.26181 * 10 9 8 30 30 C 1.37945 * 119.92487 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47376 * 270.02663 * 1 2 3 32 32 H 1.08998 * 109.46599 * 30.02851 * 1 2 3 33 33 H 1.09006 * 109.47132 * 150.02369 * 1 2 3 34 34 H 1.07998 * 119.85542 * 0.02562 * 3 2 1 35 35 H 1.08003 * 119.92905 * 180.02562 * 4 3 2 36 36 H 1.08001 * 120.07229 * 180.30018 * 5 4 3 37 37 H 1.08998 * 109.47152 * 180.02562 * 13 11 10 38 38 H 1.09005 * 109.47488 * 300.00099 * 13 11 10 39 39 H 1.09003 * 109.47555 * 60.00088 * 13 11 10 40 40 H 0.97002 * 119.99831 * 25.00404 * 14 11 10 41 41 H 1.07998 * 119.91694 * 359.95463 * 16 15 14 42 42 H 1.07995 * 120.08439 * 179.97438 * 17 16 15 43 43 H 0.97001 * 119.99895 * 180.02562 * 22 21 19 44 44 H 1.07993 * 120.07883 * 179.70476 * 27 18 17 45 45 H 1.07997 * 119.92192 * 180.27443 * 28 27 18 46 46 H 1.08005 * 120.07622 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1991 0.0000 4 6 3.5807 1.2078 0.0005 5 6 4.2811 0.0189 0.0069 6 6 3.5910 -1.1938 0.0016 7 6 4.3350 -2.4714 0.0027 8 7 3.8137 -3.6758 0.0028 9 7 4.7600 -4.5476 0.0033 10 6 5.9130 -3.9391 0.0041 11 6 7.2677 -4.5996 0.0055 12 1 8.0290 -3.8666 0.2723 13 6 7.5638 -5.1585 -1.3876 14 7 7.2775 -5.6916 0.9820 15 6 8.4757 -6.1055 1.5485 16 6 8.4814 -7.1466 2.4781 17 6 9.6542 -7.5587 3.0380 18 6 10.8625 -6.9312 2.6755 19 6 12.0806 -7.3528 3.2505 20 1 13.0094 -7.1985 2.7214 21 6 12.0848 -7.9702 4.5054 22 7 11.0415 -7.8667 5.2893 23 14 13.5793 -8.9424 5.0631 24 1 14.5172 -8.0410 5.7792 25 1 13.1485 -10.0332 5.9740 26 1 14.2601 -9.5259 3.8793 27 6 10.8485 -5.8775 1.7404 28 6 9.6690 -5.4798 1.1843 29 8 5.6752 -2.6163 0.0099 30 6 2.1952 -1.1955 0.0005 31 1 -0.3634 0.0005 1.0277 32 1 -0.3632 0.8897 -0.5143 33 1 -0.3634 -0.8902 -0.5135 34 1 1.6539 2.1324 0.0004 35 1 4.1137 2.1472 0.0009 36 1 5.3610 0.0271 0.0123 37 1 8.5434 -5.6366 -1.3866 38 1 6.8025 -5.8915 -1.6546 39 1 7.5565 -4.3460 -2.1143 40 1 6.4470 -6.1255 1.2328 41 1 7.5544 -7.6266 2.7549 42 1 9.6571 -8.3640 3.7575 43 1 11.0446 -8.2946 6.1599 44 1 11.7704 -5.3889 1.4617 45 1 9.6572 -4.6752 0.4641 46 1 1.6552 -2.1309 0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012543552.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:09 Heat of formation + Delta-G solvation = 85.279670 kcal Electronic energy + Delta-G solvation = -28229.981970 eV Core-core repulsion = 24278.997541 eV Total energy + Delta-G solvation = -3950.984429 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 349.153 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.27561 -39.74984 -38.31326 -36.32197 -36.05485 -33.84489 -33.34060 -32.45462 -31.10189 -29.62663 -29.02851 -28.19716 -27.44787 -25.22453 -24.55732 -24.12456 -22.47325 -21.90420 -21.42507 -20.79565 -20.01207 -17.84304 -17.45819 -17.29746 -16.90402 -16.31453 -16.08732 -15.64440 -15.42946 -14.94448 -14.33935 -14.24958 -14.17479 -13.75275 -13.67137 -13.59229 -12.88859 -12.70592 -12.68041 -12.58191 -12.50123 -12.30876 -12.06079 -11.98899 -11.92603 -11.76075 -11.66611 -11.53736 -11.36936 -11.06561 -10.94876 -10.88562 -10.52451 -10.40501 -9.74641 -9.38812 -9.31738 -9.24943 -8.82610 -8.68614 -7.55561 -6.69868 -6.50058 -4.10146 0.16126 0.88603 1.40943 1.92721 2.30440 2.86922 3.04336 3.13192 3.17378 3.28860 3.30895 3.50009 4.00679 4.03153 4.16075 4.36322 4.45306 4.63485 4.71119 4.78874 4.79694 4.88202 5.07186 5.16369 5.18914 5.21444 5.22899 5.32509 5.41001 5.51160 5.65619 5.70593 5.76999 5.85730 5.92443 5.96635 6.06704 6.14589 6.23699 6.27313 6.40705 6.76056 6.98577 7.11988 7.24704 7.48663 7.60068 7.71268 8.09805 8.13314 8.26618 8.35417 8.54607 8.72281 9.00955 9.08192 10.33205 Molecular weight = 349.15amu Principal moments of inertia in cm(-1) A = 0.022811 B = 0.001727 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.162463 B =16206.598440 C =16372.919177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.088 4.088 3 C -0.099 4.099 4 C -0.116 4.116 5 C -0.091 4.091 6 C -0.016 4.016 7 C 0.197 3.803 8 N -0.272 5.272 9 N -0.277 5.277 10 C 0.176 3.824 11 C 0.259 3.741 12 H 0.103 0.897 13 C -0.162 4.162 14 N -0.746 5.746 15 C 0.086 3.914 16 C -0.154 4.154 17 C -0.122 4.122 18 C 0.078 3.922 19 C -0.466 4.466 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.806 5.806 23 Si 0.904 3.096 24 H -0.272 1.272 25 H -0.278 1.278 26 H -0.262 1.262 27 C -0.189 4.189 28 C -0.159 4.159 29 O -0.216 6.216 30 C -0.070 4.070 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.396 0.604 41 H 0.089 0.911 42 H 0.120 0.880 43 H 0.277 0.723 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.468 16.164 -10.611 25.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.088 4.088 3 C -0.117 4.117 4 C -0.134 4.134 5 C -0.110 4.110 6 C -0.017 4.017 7 C -0.010 4.010 8 N -0.120 5.120 9 N -0.124 5.124 10 C -0.036 4.036 11 C 0.149 3.851 12 H 0.121 0.879 13 C -0.222 4.222 14 N -0.384 5.384 15 C -0.009 4.009 16 C -0.176 4.176 17 C -0.142 4.142 18 C 0.075 3.925 19 C -0.497 4.497 20 H 0.092 0.908 21 C -0.141 4.141 22 N -0.433 5.433 23 Si 0.728 3.272 24 H -0.198 1.198 25 H -0.203 1.203 26 H -0.187 1.187 27 C -0.209 4.209 28 C -0.180 4.180 29 O -0.095 6.095 30 C -0.089 4.089 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.147 0.853 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.230 0.770 41 H 0.107 0.893 42 H 0.138 0.862 43 H 0.088 0.912 44 H 0.111 0.889 45 H 0.107 0.893 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -17.304 15.226 -10.449 25.307 hybrid contribution 1.251 0.388 0.569 1.429 sum -16.053 15.614 -9.880 24.476 Atomic orbital electron populations 1.20820 0.90276 1.03246 1.02834 1.19864 0.96647 0.92394 0.99882 1.21293 0.94290 0.97848 0.98285 1.21086 0.94214 0.97886 1.00191 1.21293 1.00620 0.91145 0.97962 1.17202 0.92053 0.86204 1.06275 1.25446 0.77788 0.96556 1.01250 1.74700 1.24529 0.96051 1.16718 1.74356 0.95361 1.25557 1.17081 1.28615 1.00155 0.76806 0.97982 1.18925 0.84321 0.89808 0.92040 0.87917 1.22331 1.04214 1.01562 0.94054 1.43790 1.07909 1.38181 1.48487 1.17251 0.84442 0.99667 0.99579 1.20038 0.97823 0.99336 1.00358 1.20930 0.91391 1.00847 1.01009 1.17534 0.93326 0.90199 0.91409 1.19377 0.94140 1.34533 1.01603 0.90844 1.25816 0.97179 0.94858 0.96278 1.69845 1.29987 1.35255 1.08251 0.86397 0.81887 0.79792 0.79077 1.19756 1.20304 1.18654 1.20548 0.95599 1.00231 1.04504 1.19884 0.92162 1.01936 1.04069 1.84836 1.26070 1.28916 1.69651 1.21076 0.91568 0.99036 0.97215 0.90726 0.91180 0.91062 0.85286 0.84899 0.84926 0.89539 0.91410 0.92233 0.77006 0.89271 0.86197 0.91214 0.88935 0.89298 0.84246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.56 10.01 36.01 0.36 -0.20 16 2 C -0.09 -0.64 5.87 -104.68 -0.61 -1.26 16 3 C -0.10 -0.63 9.69 -39.50 -0.38 -1.01 16 4 C -0.12 -0.80 10.03 -39.64 -0.40 -1.20 16 5 C -0.09 -0.82 9.73 -39.19 -0.38 -1.20 16 6 C -0.02 -0.17 5.87 -104.98 -0.62 -0.79 16 7 C 0.20 2.74 7.99 -13.88 -0.11 2.63 16 8 N -0.27 -4.26 11.92 32.07 0.38 -3.88 16 9 N -0.28 -4.54 11.92 32.58 0.39 -4.15 16 10 C 0.18 2.68 7.26 -12.89 -0.09 2.58 16 11 C 0.26 3.85 2.80 -69.08 -0.19 3.66 16 12 H 0.10 1.50 6.45 -51.93 -0.33 1.17 16 13 C -0.16 -2.10 9.39 37.16 0.35 -1.75 16 14 N -0.75 -13.14 5.21 -53.15 -0.28 -13.42 16 15 C 0.09 1.82 6.65 -83.69 -0.56 1.26 16 16 C -0.15 -3.54 9.82 -39.77 -0.39 -3.93 16 17 C -0.12 -3.13 8.63 -39.27 -0.34 -3.47 16 18 C 0.08 2.07 5.57 -106.79 -0.59 1.47 16 19 C -0.47 -12.41 9.03 -37.87 -0.34 -12.75 16 20 H 0.07 1.88 7.90 -52.49 -0.41 1.47 16 21 C 0.07 1.89 5.15 -17.34 -0.09 1.80 16 22 N -0.81 -21.20 10.96 55.54 0.61 -20.59 16 23 Si 0.90 19.00 29.59 -169.99 -5.03 13.97 16 24 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 25 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 26 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 27 C -0.19 -4.50 9.74 -39.26 -0.38 -4.88 16 28 C -0.16 -3.37 8.74 -39.77 -0.35 -3.72 16 29 O -0.22 -3.12 10.67 4.04 0.04 -3.08 16 30 C -0.07 -0.66 9.35 -39.19 -0.37 -1.02 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 33 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 34 H 0.13 0.51 8.06 -52.49 -0.42 0.08 16 35 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 36 H 0.13 1.10 7.94 -52.49 -0.42 0.69 16 37 H 0.09 1.17 7.66 -51.93 -0.40 0.78 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.40 6.89 8.35 -40.82 -0.34 6.55 16 41 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 42 H 0.12 3.21 6.19 -52.49 -0.32 2.89 16 43 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 44 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 45 H 0.09 1.62 6.04 -52.49 -0.32 1.30 16 46 H 0.14 1.30 7.87 -52.48 -0.41 0.89 16 LS Contribution 392.41 15.07 5.91 5.91 Total: -1.00 -29.52 392.41 -9.35 -38.88 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -5.89 Total: 10.15 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: -5.49 Total: -23.78 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: 1.10 Total: -42.04 kcal Atomic # 8 Polarization: -3.12 SS G_CDS: 0.04 Total: -3.08 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.52 -9.35 -38.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012543552.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.156 kcal (2) G-P(sol) polarization free energy of solvation -29.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds