Wall clock time and date at job start Tue Mar 31 2020 06:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47218 * 2 1 4 4 N 1.32328 * 120.42874 * 270.24016 * 3 2 1 5 5 C 1.32571 * 121.05182 * 180.29031 * 4 3 2 6 6 S 1.76205 * 119.03881 * 179.73011 * 5 4 3 7 7 C 1.81001 * 100.00151 * 180.02562 * 6 5 4 8 8 C 1.50705 * 109.46835 * 179.97438 * 7 6 5 9 9 H 1.07993 * 119.99944 * 0.02562 * 8 7 6 10 10 C 1.37874 * 119.99659 * 179.97438 * 8 7 6 11 11 N 1.31517 * 120.00053 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99795 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47040 * 89.99882 * 12 10 8 14 14 H 1.48501 * 109.46793 * 209.99560 * 12 10 8 15 15 H 1.48496 * 109.47053 * 329.99677 * 12 10 8 16 16 N 1.32566 * 121.92922 * 359.74696 * 5 4 3 17 17 C 1.32757 * 120.73039 * 359.97438 * 16 5 4 18 18 N 1.38351 * 120.55630 * 179.97438 * 17 16 5 19 19 C 1.39301 * 120.43089 * 90.00534 * 3 2 1 20 20 C 1.48269 * 120.87043 * 359.96926 * 19 3 2 21 21 C 1.39398 * 120.11985 * 244.72842 * 20 19 3 22 22 C 1.37985 * 119.88820 * 179.97438 * 21 20 19 23 23 C 1.38440 * 120.11323 * 0.02562 * 22 21 20 24 24 Cl 1.73601 * 119.88477 * 180.02562 * 23 22 21 25 25 C 1.38440 * 120.22994 * 359.97438 * 23 22 21 26 26 C 1.37984 * 120.11758 * 0.03129 * 25 23 22 27 27 H 1.08997 * 109.47244 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46710 * 299.99942 * 1 2 3 29 29 H 1.08994 * 109.47363 * 59.99713 * 1 2 3 30 30 H 1.09003 * 109.46710 * 240.00058 * 2 1 3 31 31 H 1.09003 * 109.47110 * 120.00255 * 2 1 3 32 32 H 1.09004 * 109.47032 * 299.99508 * 7 6 5 33 33 H 1.08995 * 109.47009 * 59.99872 * 7 6 5 34 34 H 0.97000 * 119.99885 * 180.02562 * 11 10 8 35 35 H 0.97005 * 120.00517 * 180.02562 * 18 17 16 36 36 H 0.97005 * 119.99853 * 0.02783 * 18 17 16 37 37 H 1.08001 * 120.05319 * 0.27642 * 21 20 19 38 38 H 1.07997 * 119.94147 * 180.02562 * 22 21 20 39 39 H 1.08001 * 119.94268 * 180.02562 * 25 23 22 40 40 H 1.08002 * 120.06176 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2512 2.0543 -1.1410 5 6 2.6985 3.3022 -1.1555 6 16 2.9784 4.0925 -2.7052 7 6 3.5597 5.7085 -2.1335 8 6 3.8704 6.5802 -3.3230 9 1 3.7308 6.1982 -4.3234 10 6 4.3317 7.8656 -3.1339 11 7 4.5002 8.3312 -1.9155 12 14 4.7161 8.9463 -4.6082 13 1 3.5000 9.7052 -4.9961 14 1 5.8012 9.8968 -4.2557 15 1 5.1525 8.0961 -5.7448 16 7 2.9416 3.9728 -0.0381 17 6 2.7424 3.4102 1.1478 18 7 2.9978 4.1132 2.3116 19 6 2.2676 2.0860 1.2011 20 6 2.0298 1.4149 2.5017 21 6 1.0404 1.8879 3.3622 22 6 0.8227 1.2594 4.5712 23 6 1.5853 0.1611 4.9303 24 17 1.3059 -0.6255 6.4525 25 6 2.5691 -0.3126 4.0793 26 6 2.7949 0.3087 2.8681 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.7849 6.1804 -1.5293 33 1 4.4602 5.5791 -1.5333 34 1 4.8244 9.2357 -1.7824 35 1 2.8498 3.6942 3.1739 36 1 3.3250 5.0252 2.2654 37 1 0.4419 2.7418 3.0810 38 1 0.0561 1.6248 5.2384 39 1 3.1610 -1.1700 4.3640 40 1 3.5630 -0.0614 2.2051 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012728253.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:02 Heat of formation + Delta-G solvation = 43.717641 kcal Electronic energy + Delta-G solvation = -24790.618080 eV Core-core repulsion = 21142.318312 eV Total energy + Delta-G solvation = -3648.299767 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 349.071 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.89080 -39.22249 -36.79938 -35.82257 -34.55306 -33.19510 -31.63581 -31.47842 -31.14119 -28.81269 -28.51358 -24.97629 -24.41707 -23.06754 -22.84325 -21.75349 -21.44684 -18.22892 -17.89086 -17.57080 -16.33700 -16.13914 -15.75636 -15.52888 -15.39784 -14.73625 -14.70442 -14.39422 -14.18104 -13.85272 -13.69426 -13.66169 -13.11427 -12.69337 -12.39548 -12.38573 -12.33364 -11.92673 -11.83248 -11.56799 -11.47093 -11.18626 -11.10603 -10.96537 -10.90334 -10.64500 -10.06446 -9.79632 -9.64439 -9.37664 -9.27706 -9.11639 -8.64788 -8.64141 -8.22300 -6.91506 -6.21628 -4.28155 0.64592 0.96043 1.23898 1.68442 1.81910 2.10362 3.23191 3.24410 3.30174 3.30948 3.38021 3.72599 4.00505 4.31996 4.37673 4.49118 4.51277 4.55379 4.82099 5.00541 5.07420 5.15397 5.17471 5.21132 5.28084 5.34117 5.53086 5.61083 5.66867 5.78943 5.86725 5.89826 6.03107 6.12887 6.22637 6.39981 6.43914 6.98631 7.13934 7.24900 7.31169 7.68620 7.77567 7.94624 8.49465 8.73322 9.35189 10.88926 Molecular weight = 349.07amu Principal moments of inertia in cm(-1) A = 0.020260 B = 0.002360 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.725766 B =11860.770413 C =12883.613378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.077 4.077 3 C 0.235 3.765 4 N -0.546 5.546 5 C 0.355 3.645 6 S -0.031 6.031 7 C 0.070 3.930 8 C -0.525 4.525 9 H 0.067 0.933 10 C 0.070 3.930 11 N -0.885 5.885 12 Si 0.906 3.094 13 H -0.277 1.277 14 H -0.284 1.284 15 H -0.270 1.270 16 N -0.572 5.572 17 C 0.471 3.529 18 N -0.834 5.834 19 C -0.266 4.266 20 C 0.001 3.999 21 C -0.105 4.105 22 C -0.104 4.104 23 C -0.041 4.041 24 Cl -0.076 7.076 25 C -0.105 4.105 26 C -0.098 4.098 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.266 0.734 35 H 0.407 0.593 36 H 0.411 0.589 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.550 -17.347 15.338 24.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.115 4.115 3 C 0.086 3.914 4 N -0.267 5.267 5 C -0.019 4.019 6 S 0.209 5.791 7 C -0.078 4.078 8 C -0.565 4.565 9 H 0.085 0.915 10 C -0.135 4.135 11 N -0.522 5.522 12 Si 0.733 3.267 13 H -0.203 1.203 14 H -0.209 1.209 15 H -0.195 1.195 16 N -0.300 5.300 17 C 0.220 3.780 18 N -0.377 5.377 19 C -0.281 4.281 20 C 0.000 4.000 21 C -0.124 4.124 22 C -0.123 4.123 23 C -0.067 4.067 24 Cl -0.047 7.047 25 C -0.124 4.124 26 C -0.117 4.117 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.237 0.763 36 H 0.241 0.759 37 H 0.149 0.851 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.475 -17.134 13.424 22.709 hybrid contribution 0.335 0.949 2.017 2.254 sum -6.140 -16.185 15.440 23.196 Atomic orbital electron populations 1.21638 0.93769 1.01988 1.02484 1.20572 0.96892 0.90323 1.03726 1.21410 0.87891 0.95417 0.86698 1.68456 1.20472 1.09197 1.28576 1.25301 0.89765 0.89436 0.97415 1.85840 1.77628 1.16247 0.99432 1.21317 1.00215 0.86400 0.99838 1.20679 1.46327 0.97569 0.91877 0.91481 1.24928 0.94798 0.97344 0.96406 1.69974 1.44793 1.17106 1.20353 0.86365 0.78182 0.80028 0.82170 1.20294 1.20940 1.19478 1.68559 1.27145 1.37670 0.96656 1.18462 0.85632 0.86714 0.87190 1.42182 1.73015 1.18073 1.04458 1.19208 1.19224 0.95737 0.93912 1.18469 0.94688 0.94504 0.92364 1.21282 0.97522 1.00440 0.93148 1.20979 0.99515 0.94677 0.97144 1.20961 0.99875 0.96978 0.88919 1.98372 1.95800 1.80060 1.30502 1.20988 0.97247 1.00555 0.93596 1.21269 0.99242 0.95379 0.95769 0.91934 0.92694 0.91979 0.89518 0.89903 0.93084 0.93072 0.92478 0.76255 0.75868 0.85056 0.84877 0.84851 0.84912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.89 37.16 0.37 -1.07 16 2 C -0.08 -0.87 5.89 -27.88 -0.16 -1.03 16 3 C 0.23 3.54 6.09 -81.98 -0.50 3.04 16 4 N -0.55 -10.16 10.31 -9.49 -0.10 -10.26 16 5 C 0.35 7.37 7.85 -90.82 -0.71 6.66 16 6 S -0.03 -0.69 22.16 -107.50 -2.38 -3.08 16 7 C 0.07 1.82 4.56 36.01 0.16 1.98 16 8 C -0.52 -14.47 9.13 -34.44 -0.31 -14.78 16 9 H 0.07 1.81 7.71 -52.49 -0.40 1.41 16 10 C 0.07 1.93 5.46 -17.82 -0.10 1.84 16 11 N -0.89 -25.35 13.29 55.43 0.74 -24.61 16 12 Si 0.91 20.94 29.54 -169.99 -5.02 15.92 16 13 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 16 N -0.57 -11.54 9.14 -12.45 -0.11 -11.65 16 17 C 0.47 7.60 7.81 -154.72 -1.21 6.39 16 18 N -0.83 -10.42 8.95 31.39 0.28 -10.14 16 19 C -0.27 -3.72 5.36 -104.42 -0.56 -4.28 16 20 C 0.00 0.02 3.95 -104.91 -0.41 -0.40 16 21 C -0.11 -0.97 8.73 -39.24 -0.34 -1.31 16 22 C -0.10 -0.86 9.81 -39.60 -0.39 -1.25 16 23 C -0.04 -0.34 6.32 -39.43 -0.25 -0.59 16 24 Cl -0.08 -0.62 28.95 -51.86 -1.50 -2.12 16 25 C -0.11 -0.86 9.81 -39.60 -0.39 -1.25 16 26 C -0.10 -0.90 7.90 -39.24 -0.31 -1.21 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.08 0.78 5.50 -51.93 -0.29 0.50 16 32 H 0.05 1.41 8.11 -51.91 -0.42 0.99 16 33 H 0.05 1.41 8.11 -51.92 -0.42 0.99 16 34 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.41 3.98 7.01 -40.82 -0.29 3.69 16 36 H 0.41 5.16 8.95 -40.82 -0.37 4.80 16 37 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 39 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.13 1.15 7.88 -52.49 -0.41 0.73 16 LS Contribution 370.54 15.07 5.58 5.58 Total: -1.00 -30.36 370.54 -12.32 -42.69 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -4.69 Total: 4.94 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -5.12 Total: -7.27 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: 0.81 Total: -56.66 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: -0.69 SS G_CDS: -2.38 Total: -3.08 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.50 Total: -2.12 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.36 -12.32 -42.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012728253.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.406 kcal (2) G-P(sol) polarization free energy of solvation -30.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds