Wall clock time and date at job start Tue Mar 31 2020 05:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53222 * 1 3 3 H 1.08719 * 109.13401 * 2 1 4 4 C 1.52952 * 109.27151 * 120.28356 * 2 1 3 5 5 C 1.52147 * 109.98661 * 181.19791 * 4 2 1 6 6 C 1.51481 * 113.16924 * 306.73227 * 5 4 2 7 7 C 1.51914 * 115.43853 * 44.29021 * 6 5 4 8 8 C 1.53117 * 110.72123 * 80.37373 * 7 6 5 9 9 C 1.54389 * 108.05486 * 197.81692 * 7 6 5 10 10 C 1.52451 * 112.54275 * 316.69318 * 7 6 5 11 11 N 1.48135 * 108.71992 * 185.93549 * 5 4 2 12 12 C 1.34476 * 106.11630 * 229.02123 * 11 5 4 13 13 O 1.21534 * 123.94745 * 189.82992 * 12 11 5 14 14 N 1.33829 * 112.17541 * 10.12190 * 12 11 5 15 15 C 1.46403 * 124.33100 * 177.26233 * 14 12 11 16 16 C 1.53004 * 109.47178 * 90.02785 * 15 14 12 17 17 H 1.09002 * 109.46771 * 54.99832 * 16 15 14 18 18 C 1.47197 * 109.46977 * 294.99638 * 16 15 14 19 19 N 7.51023 * 156.33419 * 102.78177 * 2 1 3 20 20 C 1.52999 * 109.47304 * 174.99318 * 16 15 14 21 21 C 1.50696 * 109.47110 * 184.99729 * 20 16 15 22 22 H 1.07997 * 120.00012 * 0.02562 * 21 20 16 23 23 C 1.37877 * 119.99842 * 180.02562 * 21 20 16 24 24 N 1.31516 * 120.00069 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99806 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46845 * 90.00621 * 25 23 21 27 27 H 1.48503 * 109.47399 * 210.00111 * 25 23 21 28 28 H 1.48498 * 109.47295 * 330.00717 * 25 23 21 29 29 C 1.35079 * 111.37579 * 358.20646 * 14 12 11 30 30 O 1.21215 * 126.26671 * 171.67625 * 29 14 12 31 31 H 1.09007 * 109.47020 * 180.90339 * 1 2 3 32 32 H 1.09002 * 109.47161 * 300.90254 * 1 2 3 33 33 H 1.08995 * 109.47334 * 60.90335 * 1 2 3 34 34 H 1.09119 * 109.39729 * 60.85652 * 4 2 1 35 35 H 1.09143 * 109.33316 * 301.44636 * 4 2 1 36 36 H 1.10137 * 108.54893 * 166.54062 * 6 5 4 37 37 H 1.10059 * 108.64803 * 281.81822 * 6 5 4 38 38 H 1.09004 * 109.47258 * 59.99612 * 8 7 6 39 39 H 1.08998 * 109.47511 * 180.02562 * 8 7 6 40 40 H 1.09006 * 109.46825 * 300.00283 * 8 7 6 41 41 H 1.08999 * 109.47153 * 59.99144 * 9 7 6 42 42 H 1.09001 * 109.47386 * 179.97438 * 9 7 6 43 43 H 1.09005 * 109.46802 * 299.99478 * 9 7 6 44 44 H 1.09305 * 109.42675 * 172.71254 * 10 7 6 45 45 H 1.09332 * 109.39460 * 291.48663 * 10 7 6 46 46 H 0.96677 * 126.05994 * 49.90626 * 11 5 4 47 47 H 1.08993 * 109.47921 * 330.02434 * 15 14 12 48 48 H 1.09006 * 109.46967 * 210.02416 * 15 14 12 49 49 H 1.09008 * 109.46748 * 65.00050 * 20 16 15 50 50 H 1.08991 * 109.47440 * 305.00254 * 20 16 15 51 51 H 0.97000 * 119.99838 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5322 0.0000 0.0000 3 1 1.8886 1.0271 0.0000 4 6 2.0370 -0.7281 1.2468 5 6 3.5581 -0.7119 1.2784 6 6 4.1863 -1.2402 0.0052 7 6 3.5616 -0.7411 -1.2865 8 6 4.0772 0.6585 -1.6324 9 6 3.9951 -1.6893 -2.4252 10 6 2.0379 -0.7401 -1.2365 11 7 4.0189 -1.5438 2.4141 12 6 4.9196 -0.8000 3.0803 13 8 5.6295 -1.2285 3.9689 14 7 4.9398 0.4690 2.6559 15 6 5.7780 1.5202 3.2353 16 6 7.1231 1.5593 2.5072 17 1 6.9536 1.6789 1.4371 18 6 7.8500 0.3028 2.7515 19 7 8.4108 -0.6669 2.9399 20 6 7.9506 2.7365 3.0271 21 6 9.2222 2.8493 2.2263 22 1 9.4202 2.1514 1.4263 23 6 10.1328 3.8434 2.5150 24 7 9.8919 4.6930 3.4896 25 14 11.7087 3.9836 1.5219 26 1 11.4811 4.8742 0.3556 27 1 12.7831 4.5511 2.3757 28 1 12.1147 2.6372 1.0449 29 6 4.0730 0.6615 1.6379 30 8 3.7697 1.7271 1.1462 31 1 -0.3633 -1.0276 0.0162 32 1 -0.3633 0.5278 0.8818 33 1 -0.3634 0.4997 -0.8979 34 1 1.6835 -1.7603 1.2317 35 1 1.6491 -0.2308 2.1375 36 1 5.2552 -0.9746 0.0056 37 1 4.1398 -2.3397 0.0197 38 1 5.1600 0.6270 -1.7541 39 1 3.6165 0.9964 -2.5606 40 1 3.8220 1.3487 -0.8282 41 1 3.6510 -2.7002 -2.2071 42 1 3.5582 -1.3519 -3.3651 43 1 5.0821 -1.6852 -2.5073 44 1 1.6450 -0.2543 -2.1334 45 1 1.6747 -1.7711 -1.2126 46 1 3.7302 -2.4447 2.6136 47 1 5.9431 1.3121 4.2924 48 1 5.2788 2.4833 3.1282 49 1 8.1954 2.5730 4.0767 50 1 7.3755 3.6570 2.9273 51 1 9.0734 4.6204 4.0051 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012761906.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:01 Heat of formation + Delta-G solvation = -48.080315 kcal Electronic energy + Delta-G solvation = -32774.578137 eV Core-core repulsion = 28673.646438 eV Total energy + Delta-G solvation = -4100.931699 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.89389 -39.60543 -38.39528 -36.94522 -36.18506 -34.88669 -34.46061 -33.75917 -31.69151 -30.39256 -27.43597 -27.28136 -27.06428 -26.81662 -24.58732 -23.87641 -22.21685 -21.87001 -21.23767 -20.51936 -18.70602 -18.08956 -17.11046 -17.06697 -16.43505 -16.30396 -15.75026 -15.51248 -15.39611 -15.03901 -14.64499 -14.50145 -14.19965 -13.93493 -13.74701 -13.51754 -13.43260 -13.29431 -12.84737 -12.58559 -12.53356 -12.38678 -12.19245 -12.10142 -12.05201 -11.85771 -11.75722 -11.64243 -11.48003 -11.33893 -11.15557 -10.99688 -10.90413 -10.68461 -10.54852 -10.51588 -10.45859 -10.19489 -10.10635 -9.95284 -9.67922 -9.49950 -8.68796 -8.41477 -6.44379 -4.15828 1.54993 2.15082 2.92722 2.97102 3.41858 3.46807 3.58956 3.61915 3.65434 3.73580 4.10793 4.15891 4.42774 4.49517 4.54196 4.58798 4.61945 4.81099 4.92621 4.94755 5.07501 5.20879 5.25088 5.28185 5.28524 5.33987 5.34333 5.40531 5.44564 5.48106 5.48299 5.56982 5.61421 5.63571 5.72335 5.75445 5.80621 5.81835 5.88492 6.02799 6.08303 6.11125 6.14964 6.24336 6.35864 6.69491 6.99713 7.03261 7.18437 7.32963 7.99051 8.10898 8.32677 8.44350 8.77802 9.54882 10.96590 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013564 B = 0.003284 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.797971 B = 8524.650817 C = 9112.920730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.094 0.906 4 C -0.103 4.103 5 C 0.136 3.864 6 C -0.105 4.105 7 C -0.054 4.054 8 C -0.163 4.163 9 C -0.145 4.145 10 C -0.101 4.101 11 N -0.733 5.733 12 C 0.698 3.302 13 O -0.526 6.526 14 N -0.579 5.579 15 C 0.122 3.878 16 C 0.003 3.997 17 H 0.104 0.896 18 C 0.229 3.771 19 N -0.447 5.447 20 C 0.021 3.979 21 C -0.605 4.605 22 H 0.051 0.949 23 C 0.022 3.978 24 N -0.907 5.907 25 Si 1.068 2.932 26 H -0.286 1.286 27 H -0.283 1.283 28 H -0.289 1.289 29 C 0.532 3.468 30 O -0.451 6.451 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.081 0.919 41 H 0.053 0.947 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.068 0.932 45 H 0.062 0.938 46 H 0.436 0.564 47 H 0.100 0.900 48 H 0.114 0.886 49 H 0.021 0.979 50 H 0.033 0.967 51 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.716 -11.159 -9.696 27.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.112 0.888 4 C -0.141 4.141 5 C 0.045 3.955 6 C -0.143 4.143 7 C -0.055 4.055 8 C -0.220 4.220 9 C -0.202 4.202 10 C -0.138 4.138 11 N -0.398 5.398 12 C 0.399 3.601 13 O -0.397 6.397 14 N -0.325 5.325 15 C 0.001 3.999 16 C -0.020 4.020 17 H 0.122 0.878 18 C -0.088 4.088 19 N -0.123 5.123 20 C -0.018 4.018 21 C -0.644 4.644 22 H 0.069 0.931 23 C -0.183 4.183 24 N -0.543 5.543 25 Si 0.897 3.103 26 H -0.212 1.212 27 H -0.209 1.209 28 H -0.215 1.215 29 C 0.318 3.682 30 O -0.320 6.320 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.100 0.900 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.081 0.919 46 H 0.280 0.720 47 H 0.119 0.881 48 H 0.133 0.867 49 H 0.039 0.961 50 H 0.051 0.949 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.157 -11.320 -9.286 24.913 hybrid contribution -1.529 -1.063 0.187 1.872 sum -21.686 -12.383 -9.099 26.579 Atomic orbital electron populations 1.21845 0.94633 1.01688 1.02040 1.21163 0.95797 1.01213 0.93474 0.88790 1.21601 0.90073 1.02595 0.99879 1.20979 0.97336 0.88373 0.88772 1.21488 1.00300 1.01676 0.90871 1.20345 0.95182 0.96571 0.93371 1.22250 1.00988 0.95896 1.02843 1.22269 1.01563 0.98554 0.97839 1.21560 0.93768 1.00513 0.97956 1.45924 1.45716 1.18702 1.29447 1.15940 0.80880 0.81089 0.82201 1.91075 1.43151 1.73825 1.31672 1.46681 1.39888 1.11192 1.34771 1.21981 0.89248 0.89677 0.99021 1.19392 0.91542 0.88881 1.02161 0.87829 1.28779 0.93390 0.93533 0.93138 1.80994 1.09776 1.12841 1.08654 1.19271 0.95096 0.90238 0.97159 1.21926 1.04851 1.17879 1.19699 0.93085 1.25783 1.02603 0.92616 0.97271 1.70776 1.27753 1.36511 1.19241 0.83539 0.75419 0.75813 0.75565 1.21212 1.20873 1.21502 1.20693 0.78068 0.90723 0.78682 1.90708 1.58168 1.28433 1.54679 0.92798 0.92574 0.92312 0.89979 0.90742 0.91004 0.89929 0.92687 0.92475 0.90010 0.92791 0.92248 0.92478 0.91329 0.91922 0.72031 0.88123 0.86743 0.96092 0.94889 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.19 37.27 0.34 -0.50 16 2 C -0.10 -0.70 2.55 -90.67 -0.23 -0.94 16 3 H 0.09 0.87 5.62 -52.09 -0.29 0.58 16 4 C -0.10 -0.75 4.22 -27.19 -0.11 -0.87 16 5 C 0.14 1.31 0.88 -133.12 -0.12 1.19 16 6 C -0.10 -0.96 3.74 -28.05 -0.10 -1.07 16 7 C -0.05 -0.44 0.71 -154.55 -0.11 -0.55 16 8 C -0.16 -1.61 8.00 37.22 0.30 -1.31 16 9 C -0.14 -1.04 8.11 37.89 0.31 -0.74 16 10 C -0.10 -0.67 3.78 -27.15 -0.10 -0.77 16 11 N -0.73 -7.60 5.75 -53.82 -0.31 -7.91 16 12 C 0.70 10.41 7.98 -88.03 -0.70 9.71 16 13 O -0.53 -9.97 16.40 5.34 0.09 -9.88 16 14 N -0.58 -8.35 2.50 -120.95 -0.30 -8.65 16 15 C 0.12 1.91 5.16 -4.09 -0.02 1.89 16 16 C 0.00 0.05 2.42 -93.41 -0.23 -0.17 16 17 H 0.10 1.93 8.14 -51.93 -0.42 1.51 16 18 C 0.23 5.05 12.14 -20.76 -0.25 4.80 16 19 N -0.45 -10.66 18.42 42.15 0.78 -9.89 16 20 C 0.02 0.49 3.74 -27.89 -0.10 0.38 16 21 C -0.61 -16.43 8.60 -34.44 -0.30 -16.73 16 22 H 0.05 1.40 7.59 -52.49 -0.40 1.00 16 23 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 24 N -0.91 -26.70 13.65 55.43 0.76 -25.95 16 25 Si 1.07 25.22 29.90 -169.99 -5.08 20.14 16 26 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 29 C 0.53 6.75 6.45 -10.69 -0.07 6.68 16 30 O -0.45 -6.26 13.52 5.61 0.08 -6.18 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.45 8.15 -51.86 -0.42 0.02 16 35 H 0.07 0.57 8.10 -51.85 -0.42 0.15 16 36 H 0.07 0.82 7.96 -51.28 -0.41 0.42 16 37 H 0.08 0.64 7.89 -51.33 -0.40 0.24 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.50 8.12 -51.93 -0.42 0.08 16 40 H 0.08 0.94 4.09 -51.93 -0.21 0.73 16 41 H 0.05 0.34 8.06 -51.93 -0.42 -0.08 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.43 8.11 -51.76 -0.42 0.02 16 45 H 0.06 0.36 8.11 -51.74 -0.42 -0.06 16 46 H 0.44 3.38 8.94 -40.94 -0.37 3.01 16 47 H 0.10 1.59 7.90 -51.93 -0.41 1.18 16 48 H 0.11 1.57 7.91 -51.93 -0.41 1.16 16 49 H 0.02 0.51 8.01 -51.92 -0.42 0.10 16 50 H 0.03 0.75 8.01 -51.93 -0.42 0.33 16 51 H 0.27 7.76 7.22 -40.82 -0.29 7.46 16 LS Contribution 401.36 15.07 6.05 6.05 Total: -1.00 -33.73 401.36 -7.86 -41.59 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -8.31 Total: -0.87 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -1.60 Total: 1.55 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: 0.92 Total: -52.40 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: 0.16 Total: -16.06 kcal Atomic # 14 Polarization: 25.22 SS G_CDS: -5.08 Total: 20.14 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.73 -7.86 -41.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012761906.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.490 kcal (2) G-P(sol) polarization free energy of solvation -33.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds