Wall clock time and date at job start Tue Mar 31 2020 05:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47798 * 2 1 4 4 C 1.53086 * 109.48504 * 120.03054 * 2 1 3 5 5 C 1.52475 * 109.52763 * 179.14962 * 4 2 1 6 6 C 1.52481 * 110.72362 * 301.25415 * 5 4 2 7 7 C 1.53096 * 109.52094 * 58.74959 * 6 5 4 8 8 C 1.53004 * 109.47890 * 60.81030 * 7 6 5 9 9 C 1.52999 * 109.48253 * 180.84294 * 7 6 5 10 10 C 1.53000 * 109.47984 * 239.98228 * 2 1 3 11 11 N 1.46852 * 110.48839 * 63.99759 * 5 4 2 12 12 C 1.34669 * 106.41287 * 118.56845 * 11 5 4 13 13 O 1.21541 * 123.78727 * 180.02562 * 12 11 5 14 14 N 1.33860 * 112.42675 * 359.97438 * 12 11 5 15 15 C 1.46502 * 124.19697 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.47055 * 90.02555 * 15 14 12 17 17 H 1.09007 * 109.47321 * 55.00196 * 16 15 14 18 18 C 1.47201 * 109.47026 * 294.99880 * 16 15 14 19 19 N 6.43992 * 112.81977 * 68.51852 * 2 1 3 20 20 C 1.53004 * 109.47105 * 174.99885 * 16 15 14 21 21 C 1.50697 * 109.47091 * 184.99874 * 20 16 15 22 22 H 1.08004 * 119.99925 * 0.02562 * 21 20 16 23 23 C 1.37882 * 120.00058 * 180.02562 * 21 20 16 24 24 N 1.31514 * 119.99737 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99897 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47001 * 90.00397 * 25 23 21 27 27 H 1.48508 * 109.46899 * 209.99899 * 25 23 21 28 28 H 1.48499 * 109.47526 * 329.99856 * 25 23 21 29 29 C 1.34921 * 111.61014 * 0.23350 * 14 12 11 30 30 O 1.21232 * 127.25630 * 179.76789 * 29 14 12 31 31 H 1.09008 * 109.46593 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47076 * 300.01395 * 1 2 3 33 33 H 1.09000 * 109.47142 * 60.02792 * 1 2 3 34 34 H 1.09000 * 109.45982 * 59.12919 * 4 2 1 35 35 H 1.09000 * 109.46248 * 299.16684 * 4 2 1 36 36 H 1.08996 * 109.45901 * 178.76694 * 6 5 4 37 37 H 1.09004 * 109.46340 * 298.74520 * 6 5 4 38 38 H 1.08997 * 109.46997 * 32.57422 * 8 7 6 39 39 H 1.08996 * 109.47149 * 152.57321 * 8 7 6 40 40 H 1.09002 * 109.47090 * 272.57764 * 8 7 6 41 41 H 1.08998 * 109.46716 * 60.00057 * 9 7 6 42 42 H 1.08997 * 109.47218 * 180.02562 * 9 7 6 43 43 H 1.09004 * 109.47016 * 300.00457 * 9 7 6 44 44 H 1.08998 * 109.45951 * 59.58218 * 10 2 1 45 45 H 1.09002 * 109.45501 * 299.63869 * 10 2 1 46 46 H 0.96994 * 126.79518 * 298.58301 * 11 5 4 47 47 H 1.08996 * 109.47452 * 330.02597 * 15 14 12 48 48 H 1.09004 * 109.47241 * 210.02205 * 15 14 12 49 49 H 1.09001 * 109.46723 * 65.00048 * 20 16 15 50 50 H 1.09000 * 109.47293 * 304.99798 * 20 16 15 51 51 H 0.97002 * 120.00206 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0407 -0.7223 1.2495 5 6 3.5653 -0.7413 1.2398 6 6 4.0882 -1.4394 -0.0109 7 6 3.5703 -0.7143 -1.2558 8 6 4.0736 0.7305 -1.2512 9 6 4.0783 -1.4278 -2.5103 10 6 2.0402 -0.7216 -1.2490 11 7 4.0969 0.6248 1.3263 12 6 4.8168 0.6817 2.4631 13 8 5.3999 1.6775 2.8447 14 7 4.8171 -0.4812 3.1261 15 6 5.5183 -0.7068 4.3924 16 6 4.5856 -0.3729 5.5584 17 1 3.6645 -0.9480 5.4631 18 6 4.2706 1.0649 5.5385 19 7 4.0276 2.1737 5.5235 20 6 5.2731 -0.7261 6.8788 21 6 4.3110 -0.5130 8.0189 22 1 3.3091 -0.1611 7.8214 23 6 4.7096 -0.7671 9.3141 24 7 5.9297 -1.1950 9.5546 25 14 3.5167 -0.5035 10.7272 26 1 2.7610 -1.7571 10.9774 27 1 4.2724 -0.1287 11.9495 28 1 2.5686 0.5849 10.3783 29 6 4.0962 -1.4214 2.4806 30 8 3.9117 -2.5692 2.8244 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3633 0.5140 0.8898 33 1 -0.3633 0.5134 -0.8902 34 1 1.6647 -1.7453 1.2566 35 1 1.6896 -0.2003 2.1396 36 1 5.1781 -1.4220 -0.0076 37 1 3.7415 -2.4727 -0.0220 38 1 5.0562 0.7715 -0.7812 39 1 4.1459 1.0934 -2.2765 40 1 3.3773 1.3561 -0.6926 41 1 3.7191 -2.4569 -2.5135 42 1 3.7098 -0.9112 -3.3965 43 1 5.1683 -1.4234 -2.5145 44 1 1.6708 -0.2123 -2.1390 45 1 1.6821 -1.7511 -1.2452 46 1 3.9571 1.3440 0.6907 47 1 6.4003 -0.0680 4.4383 48 1 5.8225 -1.7515 4.4582 49 1 6.1461 -0.0880 7.0159 50 1 5.5859 -1.7701 6.8577 51 1 6.5491 -1.3322 8.8207 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012761916.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:04 Heat of formation + Delta-G solvation = -33.479762 kcal Electronic energy + Delta-G solvation = -32526.965372 eV Core-core repulsion = 28426.666800 eV Total energy + Delta-G solvation = -4100.298571 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.98472 -39.85282 -38.58664 -36.90409 -35.94287 -34.73194 -34.53525 -33.73329 -31.65113 -30.90257 -28.09767 -27.08239 -27.05632 -26.99756 -24.57216 -23.82638 -22.22201 -21.94669 -21.00443 -20.40151 -19.27616 -17.93443 -17.21061 -16.97558 -16.53820 -16.21127 -15.90589 -15.60860 -15.38913 -15.12434 -14.62553 -14.56077 -14.16117 -13.89600 -13.79401 -13.68884 -13.47944 -13.32353 -13.10650 -12.64302 -12.52415 -12.43642 -12.30008 -12.17650 -12.07654 -11.87022 -11.79131 -11.67790 -11.48494 -11.41355 -11.35098 -11.26772 -10.88607 -10.85580 -10.67337 -10.54966 -10.50281 -10.17988 -10.08306 -9.91132 -9.65153 -9.46950 -8.67787 -8.40650 -6.43601 -4.14884 1.57012 2.20136 3.00974 3.02342 3.42589 3.47438 3.61022 3.62735 3.66588 3.73192 4.02480 4.09503 4.34556 4.38047 4.47922 4.50336 4.62936 4.67101 4.76057 4.88701 5.01821 5.07818 5.11066 5.20141 5.24261 5.28153 5.29655 5.34008 5.35082 5.40808 5.44452 5.46704 5.48331 5.54099 5.56104 5.60581 5.70524 5.74206 5.77035 5.83720 5.85240 5.91737 6.02041 6.16894 6.25778 6.69930 7.04373 7.05269 7.19783 7.33719 8.00221 8.13818 8.33564 8.45035 8.78686 9.55765 10.97392 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018047 B = 0.002833 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.097544 B = 9880.375572 C =10094.398133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.075 0.925 4 C -0.110 4.110 5 C 0.127 3.873 6 C -0.103 4.103 7 C -0.061 4.061 8 C -0.160 4.160 9 C -0.140 4.140 10 C -0.106 4.106 11 N -0.725 5.725 12 C 0.693 3.307 13 O -0.529 6.529 14 N -0.576 5.576 15 C 0.122 3.878 16 C 0.002 3.998 17 H 0.105 0.895 18 C 0.230 3.770 19 N -0.448 5.448 20 C 0.021 3.979 21 C -0.605 4.605 22 H 0.051 0.949 23 C 0.022 3.978 24 N -0.908 5.908 25 Si 1.069 2.931 26 H -0.286 1.286 27 H -0.283 1.283 28 H -0.289 1.289 29 C 0.530 3.470 30 O -0.459 6.459 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.438 0.562 47 H 0.102 0.898 48 H 0.113 0.887 49 H 0.021 0.979 50 H 0.033 0.967 51 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.527 -2.769 -27.985 28.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 H 0.093 0.907 4 C -0.149 4.149 5 C 0.036 3.964 6 C -0.141 4.141 7 C -0.061 4.061 8 C -0.217 4.217 9 C -0.197 4.197 10 C -0.144 4.144 11 N -0.398 5.398 12 C 0.394 3.606 13 O -0.401 6.401 14 N -0.322 5.322 15 C 0.001 3.999 16 C -0.021 4.021 17 H 0.123 0.877 18 C -0.087 4.087 19 N -0.124 5.124 20 C -0.018 4.018 21 C -0.643 4.643 22 H 0.069 0.931 23 C -0.183 4.183 24 N -0.543 5.543 25 Si 0.897 3.103 26 H -0.212 1.212 27 H -0.209 1.209 28 H -0.215 1.215 29 C 0.316 3.684 30 O -0.327 6.327 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.109 0.891 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.291 0.709 47 H 0.120 0.880 48 H 0.131 0.869 49 H 0.039 0.961 50 H 0.051 0.949 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.770 -1.290 -25.872 26.774 hybrid contribution 0.178 0.033 -1.759 1.768 sum -6.591 -1.256 -27.631 28.434 Atomic orbital electron populations 1.21804 0.94308 1.02249 1.02050 1.21205 0.96188 0.99719 0.93960 0.90713 1.21761 0.90375 1.03224 0.99528 1.21030 0.96690 0.83362 0.95336 1.21799 1.01293 0.99856 0.91165 1.20524 0.95578 0.95413 0.94592 1.22382 1.01465 0.95528 1.02361 1.21864 1.01238 1.00362 0.96242 1.21732 0.93802 1.01316 0.97539 1.46567 1.54440 1.13711 1.25040 1.16149 0.80375 0.83165 0.80956 1.91065 1.47346 1.31580 1.70097 1.46632 1.48893 1.12702 1.24022 1.21999 0.95257 1.04518 0.78174 1.19399 1.00807 0.83987 0.97874 0.87747 1.28756 0.93101 0.94827 0.92051 1.80957 1.09148 1.12666 1.09604 1.19270 0.96439 0.97270 0.88776 1.21934 0.99672 1.49966 0.92770 0.93087 1.25790 0.98971 0.93637 0.99907 1.70774 1.05316 1.42188 1.36039 0.83533 0.74762 0.76506 0.75493 1.21216 1.20877 1.21506 1.20659 0.77513 0.85551 0.84694 1.90808 1.56548 1.15148 1.70227 0.92295 0.92367 0.92392 0.89094 0.90532 0.90579 0.89148 0.91496 0.91892 0.91914 0.92300 0.92290 0.92396 0.91320 0.91154 0.70947 0.88012 0.86896 0.96092 0.94900 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.20 37.16 0.34 -0.54 16 2 C -0.09 -0.59 2.39 -90.57 -0.22 -0.81 16 3 H 0.07 0.49 5.57 -51.93 -0.29 0.20 16 4 C -0.11 -0.94 4.27 -26.96 -0.12 -1.06 16 5 C 0.13 1.22 0.83 -133.11 -0.11 1.11 16 6 C -0.10 -0.76 3.78 -26.95 -0.10 -0.86 16 7 C -0.06 -0.34 0.77 -154.45 -0.12 -0.46 16 8 C -0.16 -0.91 7.05 37.16 0.26 -0.65 16 9 C -0.14 -0.67 8.33 37.16 0.31 -0.36 16 10 C -0.11 -0.55 4.00 -26.73 -0.11 -0.66 16 11 N -0.73 -7.75 4.29 -53.88 -0.23 -7.98 16 12 C 0.69 10.39 7.99 -87.83 -0.70 9.69 16 13 O -0.53 -10.02 16.54 5.33 0.09 -9.93 16 14 N -0.58 -8.41 2.50 -120.81 -0.30 -8.72 16 15 C 0.12 1.93 5.15 -4.04 -0.02 1.91 16 16 C 0.00 0.04 2.42 -93.40 -0.23 -0.19 16 17 H 0.10 2.00 8.14 -51.92 -0.42 1.57 16 18 C 0.23 5.12 12.20 -20.79 -0.25 4.87 16 19 N -0.45 -10.74 18.49 42.12 0.78 -9.96 16 20 C 0.02 0.49 3.74 -27.88 -0.10 0.39 16 21 C -0.61 -16.57 8.60 -34.44 -0.30 -16.87 16 22 H 0.05 1.41 7.59 -52.48 -0.40 1.02 16 23 C 0.02 0.61 5.46 -17.82 -0.10 0.51 16 24 N -0.91 -26.86 13.65 55.43 0.76 -26.11 16 25 Si 1.07 25.38 29.90 -169.99 -5.08 20.30 16 26 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 29 C 0.53 6.93 6.94 -10.71 -0.07 6.85 16 30 O -0.46 -6.89 17.77 5.60 0.10 -6.79 16 31 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.45 6.98 -51.93 -0.36 0.09 16 39 H 0.06 0.31 7.85 -51.93 -0.41 -0.10 16 40 H 0.06 0.36 3.72 -51.93 -0.19 0.16 16 41 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.06 0.25 8.11 -51.93 -0.42 -0.17 16 43 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.44 3.94 4.72 -40.82 -0.19 3.75 16 47 H 0.10 1.61 7.86 -51.93 -0.41 1.21 16 48 H 0.11 1.57 8.01 -51.93 -0.42 1.16 16 49 H 0.02 0.52 8.01 -51.93 -0.42 0.10 16 50 H 0.03 0.75 8.01 -51.93 -0.42 0.34 16 51 H 0.27 7.80 7.22 -40.82 -0.29 7.51 16 LS Contribution 398.87 15.07 6.01 6.01 Total: -1.00 -34.17 398.87 -7.59 -41.76 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -8.08 Total: -1.48 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -1.63 Total: 2.89 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: 1.00 Total: -52.77 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: 0.19 Total: -16.72 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -5.08 Total: 20.30 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.17 -7.59 -41.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012761916.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.282 kcal (2) G-P(sol) polarization free energy of solvation -34.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds