Wall clock time and date at job start Tue Mar 31 2020 06:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53008 * 109.47187 * 2 1 4 4 C 1.52998 * 109.46887 * 179.97438 * 3 2 1 5 5 C 1.53008 * 109.46887 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.46887 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.46980 * 179.97438 * 6 5 4 8 8 C 1.37601 * 120.00152 * 179.97438 * 7 6 5 9 9 N 1.31752 * 125.29990 * 0.03012 * 8 7 6 10 10 C 1.33407 * 109.96487 * 179.97438 * 9 8 7 11 11 C 1.39068 * 107.55079 * 359.97438 * 10 9 8 12 12 C 1.40605 * 119.22659 * 180.02562 * 11 10 9 13 13 O 1.21871 * 120.35473 * 179.72640 * 12 11 10 14 14 N 1.34917 * 119.30331 * 359.97438 * 12 11 10 15 15 H 0.96996 * 119.50275 * 180.02562 * 14 12 11 16 16 C 1.34415 * 120.99100 * 359.97438 * 14 12 11 17 17 O 1.21605 * 119.18661 * 179.97438 * 16 14 12 18 18 N 1.34641 * 121.62231 * 0.05007 * 16 14 12 19 19 C 1.46496 * 119.97183 * 179.97438 * 18 16 14 20 20 N 1.35931 * 125.29991 * 179.97438 * 8 7 6 21 21 C 1.46503 * 126.63682 * 0.04013 * 20 8 7 22 22 C 1.50693 * 109.46931 * 270.00085 * 21 20 8 23 23 H 1.08002 * 120.00680 * 359.97438 * 22 21 20 24 24 C 1.37878 * 120.00088 * 180.02562 * 22 21 20 25 25 N 1.31514 * 119.99600 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00451 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46871 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47298 * 119.99493 * 26 24 22 29 29 H 1.48502 * 109.47435 * 240.00003 * 26 24 22 30 30 H 1.09002 * 109.47291 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47315 * 300.00412 * 1 2 3 32 32 H 1.09001 * 109.47213 * 60.00076 * 1 2 3 33 33 H 1.09005 * 109.47611 * 240.00152 * 2 1 3 34 34 H 1.09001 * 109.47213 * 119.99924 * 2 1 3 35 35 H 1.08992 * 109.47125 * 60.00001 * 3 2 1 36 36 H 1.08996 * 109.46781 * 299.99666 * 3 2 1 37 37 H 1.09005 * 109.47309 * 59.99955 * 4 3 2 38 38 H 1.09001 * 109.47366 * 299.99834 * 4 3 2 39 39 H 1.08992 * 109.47125 * 60.00004 * 5 4 3 40 40 H 1.08996 * 109.46781 * 299.99670 * 5 4 3 41 41 H 1.09005 * 109.47309 * 59.99955 * 6 5 4 42 42 H 1.09001 * 109.47366 * 299.99834 * 6 5 4 43 43 H 0.97004 * 119.99761 * 359.97438 * 7 6 5 44 44 H 1.08993 * 109.47536 * 269.97680 * 19 18 16 45 45 H 1.09004 * 109.46982 * 29.97912 * 19 18 16 46 46 H 1.09003 * 109.47133 * 149.97605 * 19 18 16 47 47 H 1.09003 * 109.46667 * 29.99742 * 21 20 8 48 48 H 1.08997 * 109.46908 * 149.99481 * 21 20 8 49 49 H 0.97009 * 119.99987 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0800 2.8851 0.0013 6 6 5.6100 2.8850 0.0026 7 7 6.0983 4.2662 0.0026 8 6 7.4512 4.5176 0.0042 9 7 8.3962 3.5995 0.0052 10 6 9.5966 4.1815 0.0061 11 6 9.3956 5.5576 0.0050 12 6 10.5105 6.4143 0.0051 13 8 10.3581 7.6234 -0.0009 14 7 11.7509 5.8837 0.0067 15 1 12.5221 6.4721 0.0071 16 6 11.9341 4.5521 0.0088 17 8 13.0667 4.1093 0.0098 18 7 10.8946 3.6965 0.0084 19 6 11.1360 2.2516 0.0101 20 7 8.0207 5.7518 0.0039 21 6 7.3196 7.0382 0.0026 22 6 7.0802 7.4784 -1.4186 23 1 7.4170 6.8619 -2.2390 24 6 6.4322 8.6687 -1.6718 25 7 6.0225 9.4197 -0.6729 26 14 6.1360 9.2148 -3.4334 27 1 6.6899 8.2003 -4.3658 28 1 4.6769 9.3592 -3.6683 29 1 6.8065 10.5191 -3.6668 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 3.9337 0.9285 -0.8891 38 1 3.9329 0.9288 0.8909 39 1 3.7163 3.3986 0.8912 40 1 3.7171 3.3991 -0.8887 41 1 5.9741 2.3712 -0.8872 42 1 5.9726 2.3710 0.8928 43 1 5.4680 5.0035 0.0015 44 1 11.1967 1.8920 -1.0170 45 1 12.0732 2.0404 0.5251 46 1 10.3175 1.7471 0.5238 47 1 6.3639 6.9315 0.5158 48 1 7.9268 7.7834 0.5165 49 1 5.5668 10.2574 -0.8510 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013510699.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:49 Heat of formation + Delta-G solvation = -8.738210 kcal Electronic energy + Delta-G solvation = -30984.979584 eV Core-core repulsion = 26754.902065 eV Total energy + Delta-G solvation = -4230.077519 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 349.190 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.34663 -40.48512 -38.46352 -37.21564 -36.17134 -35.21162 -34.39282 -33.87301 -32.39049 -32.08694 -29.30507 -27.96982 -27.36974 -26.54847 -24.11576 -23.88756 -23.10169 -22.36075 -21.38704 -21.23102 -20.02349 -18.94971 -18.38388 -17.15730 -17.01149 -16.50950 -16.29275 -16.21604 -15.48613 -15.37099 -15.13294 -14.92229 -14.59115 -14.52900 -14.27628 -14.17946 -13.94955 -13.31241 -13.24864 -13.06537 -12.94722 -12.48824 -12.39362 -12.25380 -11.88809 -11.86530 -11.66019 -11.26521 -11.13769 -11.07035 -11.00206 -10.87581 -10.76961 -10.71692 -10.59035 -10.38724 -10.02556 -9.96765 -9.95377 -9.53106 -9.18679 -8.69235 -8.60308 -6.98598 -6.31192 -4.39419 1.61904 2.17872 2.33339 2.71465 3.16515 3.25153 3.28164 3.32912 3.51099 3.86570 3.96298 4.25024 4.46079 4.66958 4.70764 4.79096 4.94370 4.96390 5.04105 5.05551 5.18761 5.29714 5.36281 5.47068 5.47903 5.54851 5.59517 5.64523 5.65186 5.73577 5.79278 5.82073 5.88785 5.94628 5.95437 6.05201 6.17721 6.18293 6.20404 6.29947 6.66949 6.83932 7.01591 7.27931 7.33246 7.51396 7.60998 7.79097 7.84505 7.99736 8.29700 8.49154 8.64531 9.27534 10.76368 Molecular weight = 349.19amu Principal moments of inertia in cm(-1) A = 0.006898 B = 0.003427 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4058.424146 B = 8167.932911 C =11668.030630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.114 4.114 5 C -0.135 4.135 6 C 0.148 3.852 7 N -0.702 5.702 8 C 0.542 3.458 9 N -0.548 5.548 10 C 0.316 3.684 11 C -0.155 4.155 12 C 0.587 3.413 13 O -0.500 6.500 14 N -0.657 5.657 15 H 0.432 0.568 16 C 0.713 3.287 17 O -0.560 6.560 18 N -0.508 5.508 19 C 0.096 3.904 20 N -0.411 5.411 21 C 0.237 3.763 22 C -0.537 4.537 23 H 0.064 0.936 24 C 0.070 3.930 25 N -0.886 5.886 26 Si 0.905 3.095 27 H -0.272 1.272 28 H -0.281 1.281 29 H -0.280 1.280 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.418 0.582 44 H 0.066 0.934 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.046 0.954 48 H 0.065 0.935 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.362 -17.185 3.059 17.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.152 4.152 5 C -0.173 4.173 6 C 0.024 3.976 7 N -0.347 5.347 8 C 0.187 3.813 9 N -0.282 5.282 10 C 0.083 3.917 11 C -0.272 4.272 12 C 0.381 3.619 13 O -0.374 6.374 14 N -0.326 5.326 15 H 0.274 0.726 16 C 0.414 3.586 17 O -0.435 6.435 18 N -0.237 5.237 19 C -0.046 4.046 20 N -0.098 5.098 21 C 0.119 3.881 22 C -0.575 4.575 23 H 0.082 0.918 24 C -0.134 4.134 25 N -0.524 5.524 26 Si 0.732 3.268 27 H -0.196 1.196 28 H -0.207 1.207 29 H -0.205 1.205 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.257 0.743 44 H 0.085 0.915 45 H 0.105 0.895 46 H 0.106 0.894 47 H 0.064 0.936 48 H 0.083 0.917 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.259 -17.500 3.110 18.278 hybrid contribution -0.104 1.859 -1.002 2.114 sum -4.363 -15.642 2.108 16.375 Atomic orbital electron populations 1.21784 0.96069 1.01431 1.01842 1.21539 0.95719 0.97072 1.01968 1.21626 0.95304 0.96648 1.02289 1.21479 0.95348 0.95911 1.02457 1.21826 0.94401 0.97816 1.03239 1.21206 0.93028 0.81325 1.02051 1.43215 0.99560 1.08984 1.82903 1.18786 0.86520 0.80173 0.95843 1.69470 0.95040 1.29840 1.33892 1.17672 0.85498 0.88280 1.00247 1.18238 0.86019 0.93090 1.29898 1.15429 0.81622 0.87822 0.76986 1.91009 1.84869 1.14025 1.47528 1.44099 1.10927 1.06938 1.70657 0.72612 1.15434 0.84000 0.80903 0.78266 1.91009 1.19848 1.75972 1.56701 1.43604 1.01098 1.08348 1.70637 1.21825 1.03614 0.75940 1.03251 1.45364 1.02922 1.08123 1.53395 1.19912 0.92229 0.76285 0.99633 1.21209 1.38993 1.06503 0.90799 0.91824 1.24888 0.94833 0.95639 0.98068 1.69923 1.38296 1.13170 1.30983 0.86319 0.77860 0.78910 0.83704 1.19621 1.20659 1.20548 0.92955 0.92782 0.92767 0.92065 0.92089 0.91936 0.91875 0.91632 0.91691 0.91171 0.90957 0.91805 0.91868 0.74345 0.91533 0.89520 0.89365 0.93592 0.91668 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.15 0.37 -0.62 16 2 C -0.13 -0.84 5.93 -26.73 -0.16 -1.00 16 3 C -0.12 -0.89 5.22 -26.73 -0.14 -1.03 16 4 C -0.11 -0.87 5.21 -26.73 -0.14 -1.01 16 5 C -0.13 -1.23 5.33 -26.73 -0.14 -1.37 16 6 C 0.15 1.70 5.95 -4.04 -0.02 1.68 16 7 N -0.70 -10.68 5.67 -61.84 -0.35 -11.03 16 8 C 0.54 10.10 8.45 -320.33 -2.71 7.40 16 9 N -0.55 -9.84 10.72 -12.76 -0.14 -9.97 16 10 C 0.32 5.83 7.63 -154.61 -1.18 4.65 16 11 C -0.15 -3.26 6.91 -83.48 -0.58 -3.83 16 12 C 0.59 12.10 7.71 -15.30 -0.12 11.99 16 13 O -0.50 -12.03 16.83 5.04 0.08 -11.95 16 14 N -0.66 -10.99 5.20 -18.74 -0.10 -11.08 16 15 H 0.43 6.11 8.86 -40.82 -0.36 5.75 16 16 C 0.71 11.85 8.37 -87.36 -0.73 11.12 16 17 O -0.56 -9.74 16.64 5.27 0.09 -9.66 16 18 N -0.51 -8.14 3.06 -128.30 -0.39 -8.53 16 19 C 0.10 1.14 10.39 59.84 0.62 1.77 16 20 N -0.41 -8.86 2.82 -116.17 -0.33 -9.19 16 21 C 0.24 5.77 5.49 -5.20 -0.03 5.74 16 22 C -0.54 -14.24 9.39 -34.44 -0.32 -14.56 16 23 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 24 C 0.07 1.86 5.46 -17.82 -0.10 1.77 16 25 N -0.89 -24.45 13.29 55.43 0.74 -23.71 16 26 Si 0.91 20.87 29.54 -169.99 -5.02 15.85 16 27 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 29 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.42 6.38 7.66 -40.82 -0.31 6.07 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.09 0.95 7.38 -51.93 -0.38 0.57 16 46 H 0.09 0.97 8.00 -51.93 -0.42 0.55 16 47 H 0.05 1.08 7.47 -51.93 -0.39 0.70 16 48 H 0.07 1.78 7.28 -51.93 -0.38 1.41 16 49 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 409.19 15.07 6.17 6.17 Total: -1.00 -31.60 409.19 -12.33 -43.93 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -7.70 Total: 6.49 kcal Atomic # 6 Polarization: 28.05 SS G_CDS: -5.38 Total: 22.68 kcal Atomic # 7 Polarization: -72.95 SS G_CDS: -0.57 Total: -73.51 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: 0.17 Total: -21.60 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.60 -12.33 -43.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013510699.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.195 kcal (2) G-P(sol) polarization free energy of solvation -31.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds