Wall clock time and date at job start Tue Mar 31 2020 05:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86797 * 119.99971 * 2 1 4 4 H 1.48492 * 109.46990 * 269.99658 * 3 2 1 5 5 H 1.48499 * 109.47108 * 30.00064 * 3 2 1 6 6 H 1.48500 * 109.46891 * 149.99813 * 3 2 1 7 7 C 1.38631 * 119.99628 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00378 * 0.02562 * 7 2 1 9 9 O 1.34813 * 119.99744 * 180.02562 * 7 2 1 10 10 C 1.35781 * 117.00212 * 174.95905 * 9 7 2 11 11 C 1.38910 * 119.99539 * 5.35926 * 10 9 7 12 12 C 1.37992 * 120.00645 * 180.02562 * 11 10 9 13 13 C 1.38947 * 119.99288 * 359.97438 * 12 11 10 14 14 N 1.39917 * 119.99812 * 179.97438 * 13 12 11 15 15 C 1.34767 * 120.00139 * 35.14264 * 14 13 12 16 16 O 1.21597 * 120.00325 * 355.47504 * 15 14 13 17 17 C 1.47618 * 120.00079 * 175.20259 * 15 14 13 18 18 C 1.39730 * 120.07622 * 0.02562 * 17 15 14 19 19 C 1.37713 * 119.91881 * 179.74108 * 18 17 15 20 20 C 1.39060 * 120.07753 * 0.51047 * 19 18 17 21 21 N 1.39806 * 119.92004 * 179.73888 * 20 19 18 22 22 C 1.36639 * 125.67870 * 179.71047 * 21 20 19 23 23 C 1.34804 * 108.19451 * 179.89577 * 22 21 20 24 24 C 1.40983 * 107.48442 * 0.36736 * 23 22 21 25 25 C 1.34814 * 107.48181 * 359.77421 * 24 23 22 26 26 C 1.39066 * 120.16013 * 359.76383 * 20 19 18 27 27 C 1.37705 * 120.07843 * 359.97438 * 26 20 19 28 28 C 1.38941 * 119.99256 * 0.25558 * 13 12 11 29 29 C 1.37998 * 119.99479 * 359.51124 * 28 13 12 30 30 H 0.96994 * 119.99630 * 0.02562 * 1 2 3 31 31 H 1.08001 * 119.99430 * 0.02562 * 11 10 9 32 32 H 1.07997 * 120.00285 * 179.97438 * 12 11 10 33 33 H 0.97000 * 119.99605 * 215.13154 * 14 13 12 34 34 H 1.08004 * 120.04497 * 359.97180 * 18 17 15 35 35 H 1.07999 * 119.96295 * 180.22591 * 19 18 17 36 36 H 1.08006 * 125.89710 * 0.02562 * 22 21 20 37 37 H 1.08009 * 126.25952 * 180.18019 * 23 22 21 38 38 H 1.08004 * 126.26032 * 179.80939 * 24 23 22 39 39 H 1.08003 * 125.90133 * 180.02562 * 25 24 23 40 40 H 1.08000 * 119.95476 * 179.97438 * 26 20 19 41 41 H 1.08008 * 120.03510 * 179.97438 * 27 26 20 42 42 H 1.07997 * 119.99669 * 179.73186 * 28 13 12 43 43 H 1.07998 * 119.99068 * 180.23389 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0463 -1.4000 5 1 1.4472 2.6526 0.7000 6 1 3.5473 1.4401 0.7001 7 6 2.0089 -1.2006 0.0005 8 1 1.4689 -2.1359 0.0005 9 8 3.3570 -1.2007 0.0011 10 6 3.9734 -2.4058 0.1079 11 6 3.2215 -3.5737 0.0981 12 6 3.8477 -4.7985 0.2071 13 6 5.2305 -4.8635 0.3262 14 7 5.8655 -6.1053 0.4374 15 6 5.3807 -7.1720 -0.2285 16 8 4.3458 -7.0760 -0.8597 17 6 6.1093 -8.4555 -0.1967 18 6 7.3014 -8.5664 0.5238 19 6 7.9756 -9.7667 0.5556 20 6 7.4769 -10.8647 -0.1368 21 7 8.1670 -12.0803 -0.1067 22 6 7.7830 -13.2305 -0.7364 23 6 8.7024 -14.1809 -0.4745 24 6 9.6862 -13.6019 0.3529 25 6 9.3345 -12.3174 0.5624 26 6 6.2938 -10.7565 -0.8596 27 6 5.6115 -9.5608 -0.8915 28 6 5.9820 -3.6950 0.3408 29 6 5.3559 -2.4705 0.2269 30 1 -0.4849 0.8400 -0.0004 31 1 2.1467 -3.5231 0.0051 32 1 3.2630 -5.7065 0.1999 33 1 6.6547 -6.1984 0.9936 34 1 7.6916 -7.7127 1.0581 35 1 8.8951 -9.8542 1.1152 36 1 6.8970 -13.3558 -1.3412 37 1 8.6866 -15.2004 -0.8307 38 1 10.5618 -14.0968 0.7466 39 1 9.8814 -11.5998 1.1559 40 1 5.9098 -11.6113 -1.3965 41 1 4.6929 -9.4774 -1.4534 42 1 7.0565 -3.7452 0.4378 43 1 5.9404 -1.5625 0.2345 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015766141.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:43 Heat of formation + Delta-G solvation = 61.263733 kcal Electronic energy + Delta-G solvation = -27473.144687 eV Core-core repulsion = 23450.711665 eV Total energy + Delta-G solvation = -4022.433022 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.126 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.09377 -40.57340 -39.22852 -38.44023 -36.65258 -34.30805 -33.56688 -32.35099 -31.79117 -30.35080 -29.80211 -29.28660 -27.98293 -25.31075 -24.29950 -23.47880 -22.58662 -21.68240 -20.83601 -20.37515 -20.02417 -19.18830 -18.38581 -17.71935 -17.24697 -16.71983 -15.66759 -15.50776 -15.35218 -15.15154 -15.04475 -14.46523 -14.36182 -14.07387 -14.00591 -13.83921 -13.80568 -13.75067 -13.01116 -12.91961 -12.76456 -12.72733 -12.46437 -12.43533 -12.29587 -11.79998 -11.71707 -11.57737 -10.98441 -10.77608 -10.30158 -10.29124 -9.91416 -9.73905 -9.63965 -9.28621 -8.79808 -8.71916 -8.48386 -8.32867 -7.11044 -6.42784 -4.08694 0.10893 0.77762 1.75097 2.03627 2.11964 2.33725 2.55736 2.77856 3.09494 3.21734 3.24563 3.38480 3.49697 4.06956 4.19517 4.22167 4.38646 4.48341 4.51760 4.64255 4.69919 4.76094 4.81740 4.96483 5.08934 5.10504 5.21875 5.38914 5.50544 5.51936 5.58191 5.64794 5.78355 5.81841 5.86858 6.01212 6.05631 6.14994 6.20573 6.44333 6.54085 6.71118 6.72317 6.85285 6.94183 7.04389 7.26439 7.49628 7.57972 7.77431 8.00407 8.19969 8.91913 9.53126 10.64665 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.041117 B = 0.001615 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.821483 B =17336.758131 C =17898.203034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.389 4.389 8 H 0.107 0.893 9 O -0.215 6.215 10 C 0.153 3.847 11 C -0.207 4.207 12 C -0.065 4.065 13 C 0.040 3.960 14 N -0.654 5.654 15 C 0.550 3.450 16 O -0.519 6.519 17 C -0.141 4.141 18 C -0.057 4.057 19 C -0.149 4.149 20 C 0.163 3.837 21 N -0.399 5.399 22 C -0.014 4.014 23 C -0.189 4.189 24 C -0.189 4.189 25 C -0.015 4.015 26 C -0.149 4.149 27 C -0.028 4.028 28 C -0.094 4.094 29 C -0.177 4.177 30 H 0.280 0.720 31 H 0.137 0.863 32 H 0.128 0.872 33 H 0.401 0.599 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.167 0.833 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.166 0.834 40 H 0.137 0.863 41 H 0.148 0.852 42 H 0.117 0.883 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.441 -24.154 1.892 31.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.465 4.465 8 H 0.125 0.875 9 O -0.120 6.120 10 C 0.100 3.900 11 C -0.227 4.227 12 C -0.085 4.085 13 C -0.053 4.053 14 N -0.299 5.299 15 C 0.338 3.662 16 O -0.396 6.396 17 C -0.145 4.145 18 C -0.076 4.076 19 C -0.168 4.168 20 C 0.070 3.930 21 N -0.071 5.071 22 C -0.140 4.140 23 C -0.213 4.213 24 C -0.213 4.213 25 C -0.141 4.141 26 C -0.168 4.168 27 C -0.048 4.048 28 C -0.114 4.114 29 C -0.197 4.197 30 H 0.090 0.910 31 H 0.155 0.845 32 H 0.146 0.854 33 H 0.237 0.763 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.184 0.816 37 H 0.160 0.840 38 H 0.160 0.840 39 H 0.184 0.816 40 H 0.155 0.845 41 H 0.166 0.834 42 H 0.135 0.865 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 18.450 -23.488 1.402 29.900 hybrid contribution 0.621 0.521 0.264 0.852 sum 19.071 -22.967 1.666 29.899 Atomic orbital electron populations 1.69659 1.05566 1.28517 1.47782 1.24476 0.95038 0.98840 0.95660 0.86168 0.80291 0.81400 0.78963 1.19878 1.20805 1.18346 1.20787 0.76857 0.96715 1.52114 0.87534 1.83563 1.22663 1.25659 1.80112 1.19159 0.91701 0.85582 0.93544 1.21232 1.01360 0.91262 1.08827 1.20921 0.92388 0.97906 0.97237 1.17288 0.91778 0.83354 1.12833 1.43078 1.31252 1.07988 1.47593 1.18147 0.85164 0.83503 0.79366 1.90813 1.22907 1.83714 1.42124 1.20022 0.97033 0.94793 1.02632 1.21171 0.93148 0.97163 0.96123 1.20714 1.01963 0.91741 1.02398 1.18087 0.92710 0.84748 0.97499 1.41657 1.19080 1.07687 1.38700 1.21980 1.02744 0.85173 1.04112 1.21049 0.96446 0.99594 1.04185 1.21049 1.01811 0.94081 1.04311 1.21959 0.89861 0.98750 1.03549 1.20804 0.94649 0.99321 1.02058 1.21165 0.98854 0.90059 0.94688 1.20346 0.98144 0.90743 1.02176 1.19978 0.91941 0.97304 1.10493 0.91020 0.84506 0.85386 0.76341 0.84565 0.84567 0.81596 0.84033 0.84045 0.81635 0.84480 0.83434 0.86528 0.86000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.32 13.96 55.48 0.77 -24.55 16 2 C 0.06 1.77 5.49 -17.51 -0.10 1.67 16 3 Si 0.91 21.51 28.62 -169.99 -4.86 16.64 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.39 -10.95 9.94 30.88 0.31 -10.64 16 8 H 0.11 3.08 5.43 -52.49 -0.28 2.79 16 9 O -0.22 -5.62 8.58 0.00 0.00 -5.62 16 10 C 0.15 3.49 6.65 -39.09 -0.26 3.23 16 11 C -0.21 -4.58 9.16 -39.42 -0.36 -4.94 16 12 C -0.06 -1.27 8.69 -39.41 -0.34 -1.61 16 13 C 0.04 0.67 6.30 -83.64 -0.53 0.14 16 14 N -0.65 -8.37 5.28 -10.74 -0.06 -8.43 16 15 C 0.55 7.58 7.61 -12.44 -0.09 7.48 16 16 O -0.52 -9.21 13.77 5.28 0.07 -9.14 16 17 C -0.14 -1.45 5.87 -104.96 -0.62 -2.07 16 18 C -0.06 -0.42 9.53 -39.22 -0.37 -0.80 16 19 C -0.15 -1.04 9.43 -39.47 -0.37 -1.42 16 20 C 0.16 1.33 6.62 -83.61 -0.55 0.78 16 21 N -0.40 -3.24 2.97 -60.89 -0.18 -3.42 16 22 C -0.01 -0.11 10.73 -16.63 -0.18 -0.28 16 23 C -0.19 -1.38 10.86 -39.76 -0.43 -1.81 16 24 C -0.19 -1.36 10.86 -39.76 -0.43 -1.79 16 25 C -0.02 -0.11 10.73 -16.63 -0.18 -0.29 16 26 C -0.15 -1.19 9.43 -39.47 -0.37 -1.56 16 27 C -0.03 -0.27 9.58 -39.22 -0.38 -0.65 16 28 C -0.09 -1.50 9.96 -39.41 -0.39 -1.89 16 29 C -0.18 -3.37 9.98 -39.42 -0.39 -3.76 16 30 H 0.28 7.44 8.31 -40.82 -0.34 7.11 16 31 H 0.14 3.20 5.63 -52.49 -0.30 2.90 16 32 H 0.13 2.51 6.22 -52.49 -0.33 2.18 16 33 H 0.40 3.51 6.86 -40.82 -0.28 3.23 16 34 H 0.14 0.66 6.41 -52.48 -0.34 0.32 16 35 H 0.14 0.65 6.68 -52.49 -0.35 0.30 16 36 H 0.17 0.85 6.99 -52.48 -0.37 0.49 16 37 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 38 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 39 H 0.17 0.77 6.99 -52.48 -0.37 0.40 16 40 H 0.14 0.82 6.68 -52.49 -0.35 0.47 16 41 H 0.15 1.43 7.64 -52.48 -0.40 1.03 16 42 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 43 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 367.98 15.07 5.55 5.55 Total: -1.00 -33.43 367.98 -8.94 -42.37 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -4.18 Total: 6.80 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -6.04 Total: -20.21 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.54 Total: -36.40 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: 0.07 Total: -14.76 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.86 Total: 16.64 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.43 -8.94 -42.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015766141.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.635 kcal (2) G-P(sol) polarization free energy of solvation -33.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds