Wall clock time and date at job start Tue Mar 31 2020 05:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31446 * 1 3 3 Si 1.86794 * 120.00409 * 2 1 4 4 H 1.48496 * 109.47388 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46977 * 300.00140 * 3 2 1 6 6 H 1.48498 * 109.47276 * 59.99894 * 3 2 1 7 7 C 1.38936 * 119.99634 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00326 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00150 * 359.97438 * 7 2 1 10 10 C 1.76194 * 100.00149 * 180.02562 * 9 7 2 11 11 N 1.32754 * 120.14140 * 0.27720 * 10 9 7 12 12 C 1.33101 * 120.66602 * 180.29190 * 11 10 9 13 13 O 1.21993 * 119.45838 * 179.73291 * 12 11 10 14 14 N 1.34489 * 121.07935 * 359.45479 * 12 11 10 15 15 C 1.40027 * 119.78399 * 180.22928 * 14 12 11 16 16 C 1.38873 * 120.05571 * 270.28791 * 15 14 12 17 17 C 1.38099 * 119.94324 * 179.76635 * 16 15 14 18 18 C 1.38397 * 120.05334 * 0.47964 * 17 16 15 19 19 Cl 1.73604 * 119.94261 * 179.74372 * 18 17 16 20 20 C 1.38394 * 120.11861 * 359.77715 * 18 17 16 21 21 C 1.38097 * 120.05429 * 359.97438 * 20 18 17 22 22 C 1.36732 * 120.43203 * 0.24516 * 14 12 11 23 23 C 1.35278 * 119.14009 * 0.02562 * 22 14 12 24 24 C 1.51221 * 110.29376 * 180.02562 * 23 22 14 25 25 C 1.54442 * 105.02293 * 343.06642 * 24 23 22 26 26 C 1.51265 * 130.63908 * 180.02562 * 22 14 12 27 27 H 0.97007 * 119.99238 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.03057 * 359.97438 * 16 15 14 29 29 H 1.07997 * 119.97334 * 180.20935 * 17 16 15 30 30 H 1.08001 * 119.97703 * 179.97438 * 20 18 17 31 31 H 1.08007 * 120.02560 * 180.02562 * 21 20 18 32 32 H 1.09003 * 110.32836 * 224.18453 * 24 23 22 33 33 H 1.09003 * 110.41786 * 101.99813 * 24 23 22 34 34 H 1.08997 * 110.93414 * 267.53287 * 25 24 23 35 35 H 1.09006 * 110.93022 * 143.86693 * 25 24 23 36 36 H 1.09002 * 110.32714 * 315.78218 * 26 22 14 37 37 H 1.09002 * 110.32448 * 77.88791 * 26 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2485 1.6176 0.0000 4 1 3.7085 1.3462 -0.0006 5 1 1.8898 2.3963 -1.2125 6 1 1.8899 2.3964 1.2125 7 6 2.0091 -1.2033 -0.0005 8 1 3.0890 -1.2034 -0.0010 9 16 1.1280 -2.7292 -0.0005 10 6 2.4777 -3.8618 -0.0005 11 7 3.7263 -3.4109 0.0050 12 6 4.7536 -4.2571 -0.0008 13 8 5.8921 -3.8187 -0.0004 14 7 4.5572 -5.5876 -0.0014 15 6 5.6579 -6.4532 -0.0026 16 6 6.2075 -6.8777 -1.2053 17 6 7.2960 -7.7276 -1.2038 18 6 7.8330 -8.1640 -0.0052 19 17 9.1972 -9.2376 -0.0068 20 6 7.2839 -7.7467 1.1946 21 6 6.1985 -6.8929 1.1986 22 6 3.2898 -6.1006 -0.0011 23 6 2.2359 -5.2524 -0.0007 24 6 0.9380 -6.0286 0.0002 25 6 1.3266 -7.4588 -0.4342 26 6 2.8072 -7.5342 -0.0011 27 1 -0.4849 0.8402 0.0004 28 1 5.7861 -6.5409 -2.1409 29 1 7.7260 -8.0553 -2.1387 30 1 7.7044 -8.0891 2.1286 31 1 5.7706 -6.5671 2.1353 32 1 0.2365 -5.5940 -0.7119 33 1 0.5032 -6.0413 0.9997 34 1 1.2301 -7.5779 -1.5133 35 1 0.7284 -8.2020 0.0932 36 1 3.3805 -8.1267 -0.7142 37 1 2.8899 -7.9615 0.9982 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015840477.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:49 Heat of formation + Delta-G solvation = 29.226773 kcal Electronic energy + Delta-G solvation = -24914.892662 eV Core-core repulsion = 21195.557340 eV Total energy + Delta-G solvation = -3719.335322 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 348.044 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.59286 -39.22017 -37.79504 -36.76225 -34.86407 -34.71840 -32.88460 -31.40181 -29.89532 -29.01834 -27.64474 -25.91473 -24.51754 -23.15986 -22.61505 -21.70030 -20.84235 -18.35402 -18.06630 -17.67990 -16.82454 -16.45314 -16.06236 -15.47409 -15.07170 -14.69488 -14.49966 -14.48760 -13.82212 -13.72241 -13.33070 -13.31324 -12.90778 -12.69305 -12.47257 -12.10815 -11.99904 -11.73212 -11.68000 -11.38237 -11.28371 -11.22206 -11.14976 -11.01748 -10.79232 -10.43075 -10.23226 -10.15049 -9.34828 -9.33694 -9.08091 -8.99058 -8.57870 -7.81732 -7.25692 -6.66289 -4.37500 0.75873 1.00681 1.10339 1.83257 2.22537 2.66487 2.94429 3.12426 3.18803 3.28006 3.32028 3.90977 4.17482 4.32892 4.53670 4.57800 4.57962 4.82758 4.83967 4.88914 4.96978 5.07109 5.14151 5.15654 5.34657 5.43042 5.58831 5.62353 5.65098 5.70035 5.81496 5.91391 6.01824 6.10789 6.17112 6.17877 6.29054 6.39185 6.84606 7.00005 7.42821 8.34743 8.60482 8.89589 8.98221 10.40042 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.016093 B = 0.003010 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.509222 B = 9299.927648 C =10715.853622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.078 3.922 3 Si 0.930 3.070 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.540 4.540 8 H 0.118 0.882 9 S 0.195 5.805 10 C 0.188 3.812 11 N -0.556 5.556 12 C 0.643 3.357 13 O -0.556 6.556 14 N -0.492 5.492 15 C 0.138 3.862 16 C -0.091 4.091 17 C -0.100 4.100 18 C -0.031 4.031 19 Cl -0.070 7.070 20 C -0.100 4.100 21 C -0.091 4.091 22 C 0.155 3.845 23 C -0.215 4.215 24 C -0.062 4.062 25 C -0.113 4.113 26 C -0.076 4.076 27 H 0.278 0.722 28 H 0.135 0.865 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.457 -20.340 -0.121 20.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.133 4.133 3 Si 0.755 3.245 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.689 4.689 8 H 0.136 0.864 9 S 0.442 5.558 10 C -0.076 4.076 11 N -0.303 5.303 12 C 0.343 3.657 13 O -0.434 6.434 14 N -0.211 5.211 15 C 0.048 3.952 16 C -0.111 4.111 17 C -0.120 4.120 18 C -0.058 4.058 19 Cl -0.041 7.041 20 C -0.120 4.120 21 C -0.111 4.111 22 C 0.040 3.960 23 C -0.226 4.226 24 C -0.100 4.100 25 C -0.151 4.151 26 C -0.114 4.114 27 H 0.088 0.912 28 H 0.153 0.847 29 H 0.157 0.843 30 H 0.157 0.843 31 H 0.153 0.847 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.238 -19.213 -0.115 19.676 hybrid contribution 1.886 0.429 0.030 1.935 sum 6.124 -18.784 -0.085 19.758 Atomic orbital electron populations 1.69888 1.06364 1.28995 1.44504 1.25250 0.95134 1.00267 0.92644 0.85879 0.80628 0.79901 0.78076 1.18443 1.20149 1.20146 1.23844 0.98467 0.89792 1.56772 0.86414 1.83357 1.01788 0.97149 1.73460 1.24730 0.98789 0.94776 0.89306 1.70495 0.97197 1.29756 1.32840 1.18522 0.90725 0.77141 0.79352 1.90918 1.21599 1.74704 1.56167 1.44093 1.03307 1.08034 1.65644 1.17789 0.90607 0.93237 0.93612 1.21245 0.95567 0.96408 0.97833 1.20909 0.95977 0.97865 0.97218 1.20964 0.92301 0.97372 0.95143 1.98371 1.43267 1.63533 1.98962 1.20906 0.95954 0.97920 0.97191 1.21241 0.95664 0.96330 0.97824 1.21195 0.83428 0.97002 0.94335 1.20443 0.95946 0.92320 1.13903 1.20781 0.93840 0.92649 1.02751 1.22312 0.93610 0.97293 1.01910 1.21205 0.97151 0.89899 1.03144 0.91235 0.84705 0.84270 0.84273 0.84719 0.89820 0.89994 0.90418 0.89780 0.90060 0.88993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.96 13.21 55.50 0.73 -22.23 16 2 C 0.08 2.05 5.49 -17.46 -0.10 1.96 16 3 Si 0.93 20.96 29.55 -169.99 -5.02 15.93 16 4 H -0.26 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.54 -14.70 9.27 30.99 0.29 -14.42 16 8 H 0.12 3.43 6.56 -52.49 -0.34 3.08 16 9 S 0.19 4.54 21.44 -107.50 -2.30 2.24 16 10 C 0.19 4.13 7.03 -16.05 -0.11 4.02 16 11 N -0.56 -13.94 8.61 -15.37 -0.13 -14.08 16 12 C 0.64 15.12 8.30 -88.66 -0.74 14.38 16 13 O -0.56 -14.73 17.13 4.92 0.08 -14.65 16 14 N -0.49 -8.89 2.65 -60.98 -0.16 -9.05 16 15 C 0.14 2.11 4.02 -83.64 -0.34 1.77 16 16 C -0.09 -1.20 9.97 -39.40 -0.39 -1.59 16 17 C -0.10 -1.10 9.82 -39.57 -0.39 -1.49 16 18 C -0.03 -0.34 6.32 -39.47 -0.25 -0.59 16 19 Cl -0.07 -0.67 28.95 -51.86 -1.50 -2.17 16 20 C -0.10 -1.10 9.82 -39.58 -0.39 -1.49 16 21 C -0.09 -1.20 9.97 -39.40 -0.39 -1.59 16 22 C 0.15 2.37 6.75 -81.18 -0.55 1.82 16 23 C -0.21 -3.64 6.05 -104.32 -0.63 -4.27 16 24 C -0.06 -0.75 6.49 -26.87 -0.17 -0.93 16 25 C -0.11 -0.99 7.13 -25.22 -0.18 -1.17 16 26 C -0.08 -0.76 6.36 -26.85 -0.17 -0.93 16 27 H 0.28 6.84 8.31 -40.82 -0.34 6.50 16 28 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 29 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 31 H 0.13 1.71 8.06 -52.48 -0.42 1.28 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 351.60 15.07 5.30 5.30 Total: -1.00 -33.15 351.60 -11.22 -44.37 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -3.71 Total: -1.14 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -4.51 Total: -4.52 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.44 Total: -45.36 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: 0.08 Total: -14.65 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 4.54 SS G_CDS: -2.30 Total: 2.24 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.15 -11.22 -44.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015840477.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.601 kcal (2) G-P(sol) polarization free energy of solvation -33.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds