Wall clock time and date at job start Tue Mar 31 2020 05:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31446 * 1 3 3 Si 1.86794 * 120.00409 * 2 1 4 4 H 1.48496 * 109.47388 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46977 * 300.00140 * 3 2 1 6 6 H 1.48498 * 109.47276 * 59.99894 * 3 2 1 7 7 C 1.38936 * 119.99634 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00326 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00150 * 359.97438 * 7 2 1 10 10 C 1.76194 * 100.00149 * 180.02562 * 9 7 2 11 11 N 1.32754 * 120.14140 * 0.27720 * 10 9 7 12 12 C 1.33101 * 120.66602 * 180.29190 * 11 10 9 13 13 O 1.21993 * 119.45838 * 179.73291 * 12 11 10 14 14 N 1.34489 * 121.07935 * 359.45479 * 12 11 10 15 15 C 1.40027 * 119.78399 * 180.22928 * 14 12 11 16 16 C 1.38873 * 120.05571 * 270.28791 * 15 14 12 17 17 C 1.38099 * 119.94324 * 179.76635 * 16 15 14 18 18 C 1.38397 * 120.05334 * 0.47964 * 17 16 15 19 19 Cl 1.73604 * 119.94261 * 179.74372 * 18 17 16 20 20 C 1.38394 * 120.11861 * 359.77715 * 18 17 16 21 21 C 1.38097 * 120.05429 * 359.97438 * 20 18 17 22 22 C 1.36732 * 120.43203 * 0.24516 * 14 12 11 23 23 C 1.35278 * 119.14009 * 0.02562 * 22 14 12 24 24 C 1.51221 * 110.29376 * 180.02562 * 23 22 14 25 25 C 1.54442 * 105.02293 * 343.06642 * 24 23 22 26 26 C 1.51265 * 130.63908 * 180.02562 * 22 14 12 27 27 H 0.97007 * 119.99238 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.03057 * 359.97438 * 16 15 14 29 29 H 1.07997 * 119.97334 * 180.20935 * 17 16 15 30 30 H 1.08001 * 119.97703 * 179.97438 * 20 18 17 31 31 H 1.08007 * 120.02560 * 180.02562 * 21 20 18 32 32 H 1.09003 * 110.32836 * 224.18453 * 24 23 22 33 33 H 1.09003 * 110.41786 * 101.99813 * 24 23 22 34 34 H 1.08997 * 110.93414 * 267.53287 * 25 24 23 35 35 H 1.09006 * 110.93022 * 143.86693 * 25 24 23 36 36 H 1.09002 * 110.32714 * 315.78218 * 26 22 14 37 37 H 1.09002 * 110.32448 * 77.88791 * 26 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2485 1.6176 0.0000 4 1 3.7085 1.3462 -0.0006 5 1 1.8898 2.3963 -1.2125 6 1 1.8899 2.3964 1.2125 7 6 2.0091 -1.2033 -0.0005 8 1 3.0890 -1.2034 -0.0010 9 16 1.1280 -2.7292 -0.0005 10 6 2.4777 -3.8618 -0.0005 11 7 3.7263 -3.4109 0.0050 12 6 4.7536 -4.2571 -0.0008 13 8 5.8921 -3.8187 -0.0004 14 7 4.5572 -5.5876 -0.0014 15 6 5.6579 -6.4532 -0.0026 16 6 6.2075 -6.8777 -1.2053 17 6 7.2960 -7.7276 -1.2038 18 6 7.8330 -8.1640 -0.0052 19 17 9.1972 -9.2376 -0.0068 20 6 7.2839 -7.7467 1.1946 21 6 6.1985 -6.8929 1.1986 22 6 3.2898 -6.1006 -0.0011 23 6 2.2359 -5.2524 -0.0007 24 6 0.9380 -6.0286 0.0002 25 6 1.3266 -7.4588 -0.4342 26 6 2.8072 -7.5342 -0.0011 27 1 -0.4849 0.8402 0.0004 28 1 5.7861 -6.5409 -2.1409 29 1 7.7260 -8.0553 -2.1387 30 1 7.7044 -8.0891 2.1286 31 1 5.7706 -6.5671 2.1353 32 1 0.2365 -5.5940 -0.7119 33 1 0.5032 -6.0413 0.9997 34 1 1.2301 -7.5779 -1.5133 35 1 0.7284 -8.2020 0.0932 36 1 3.3805 -8.1267 -0.7142 37 1 2.8899 -7.9615 0.9982 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000015840477.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:48 Heat of formation + Delta-G solvation = 9.690194 kcal Electronic energy + Delta-G solvation = -24915.739832 eV Core-core repulsion = 21195.557340 eV Total energy + Delta-G solvation = -3720.182492 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 348.044 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.07104 -40.27372 -39.22851 -37.67957 -36.42356 -36.11859 -34.86684 -32.35250 -31.00468 -30.29294 -28.78716 -27.88529 -26.00231 -24.12020 -23.84917 -23.06327 -21.80437 -20.12597 -19.46696 -19.13955 -17.87917 -17.71893 -17.66571 -17.04064 -16.39166 -16.21150 -15.90369 -15.62932 -15.01406 -14.73978 -14.69823 -14.55230 -13.90058 -13.85743 -13.53382 -13.40090 -13.30182 -13.13827 -13.07975 -12.92131 -12.74196 -12.59656 -12.25372 -12.07735 -12.07454 -11.95869 -11.87601 -11.46160 -11.26199 -10.98368 -10.49587 -10.27931 -9.81883 -9.38539 -9.05758 -8.62728 -6.40524 -0.43620 -0.25999 0.06949 0.66680 0.94667 1.01675 1.31268 1.31738 1.43074 1.52499 2.06921 2.30083 2.63384 2.84011 2.89872 3.10680 3.54598 3.60970 3.67569 3.79301 4.00501 4.02698 4.12878 4.18115 4.21694 4.43637 4.64601 4.71324 4.72836 4.76326 4.82753 4.95641 4.98493 5.13468 5.15679 5.22777 5.35052 5.40437 5.42615 5.46035 5.63526 6.22821 6.84051 6.90992 7.22844 8.45610 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.016093 B = 0.003010 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.509222 B = 9299.927648 C =10715.853622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.041 3.959 3 Si 0.985 3.015 4 H -0.282 1.282 5 H -0.260 1.260 6 H -0.260 1.260 7 C -0.576 4.576 8 H 0.086 0.914 9 S 0.172 5.828 10 C 0.198 3.802 11 N -0.611 5.611 12 C 0.634 3.366 13 O -0.604 6.604 14 N -0.480 5.480 15 C 0.101 3.899 16 C -0.098 4.098 17 C -0.091 4.091 18 C -0.028 4.028 19 Cl -0.052 7.052 20 C -0.091 4.091 21 C -0.097 4.097 22 C 0.180 3.820 23 C -0.244 4.244 24 C -0.062 4.062 25 C -0.097 4.097 26 C -0.070 4.070 27 H 0.285 0.715 28 H 0.133 0.867 29 H 0.166 0.834 30 H 0.166 0.834 31 H 0.134 0.866 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.123 0.877 36 H 0.105 0.895 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.975 -24.611 -0.073 25.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.167 4.167 3 Si 0.807 3.193 4 H -0.207 1.207 5 H -0.185 1.185 6 H -0.185 1.185 7 C -0.725 4.725 8 H 0.104 0.896 9 S 0.419 5.581 10 C -0.065 4.065 11 N -0.358 5.358 12 C 0.334 3.666 13 O -0.485 6.485 14 N -0.195 5.195 15 C 0.011 3.989 16 C -0.117 4.117 17 C -0.110 4.110 18 C -0.055 4.055 19 Cl -0.022 7.022 20 C -0.110 4.110 21 C -0.117 4.117 22 C 0.064 3.936 23 C -0.255 4.255 24 C -0.100 4.100 25 C -0.135 4.135 26 C -0.108 4.108 27 H 0.094 0.906 28 H 0.151 0.849 29 H 0.183 0.817 30 H 0.184 0.816 31 H 0.152 0.848 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.141 0.859 36 H 0.123 0.877 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.734 -23.516 -0.068 23.988 hybrid contribution 1.991 1.373 0.020 2.418 sum 6.725 -22.143 -0.048 23.142 Atomic orbital electron populations 1.69907 1.06989 1.29940 1.45442 1.25905 0.95954 1.02617 0.92216 0.85102 0.78036 0.76948 0.79197 1.20717 1.18494 1.18482 1.23754 0.97353 0.92346 1.59011 0.89607 1.82985 1.02302 0.95998 1.76854 1.24982 0.97311 0.96926 0.87312 1.70328 0.98891 1.32633 1.33946 1.18345 0.89708 0.78930 0.79634 1.90855 1.22823 1.76201 1.58622 1.43788 1.05672 1.07091 1.62916 1.18086 0.91063 0.94366 0.95403 1.21264 0.96367 0.97116 0.96976 1.21143 0.94732 0.96573 0.98543 1.21111 0.92387 0.96954 0.95047 1.98388 1.42187 1.62743 1.98927 1.21144 0.94695 0.96619 0.98503 1.21266 0.96442 0.96989 0.96972 1.22325 0.81646 1.00005 0.89654 1.20907 0.99431 0.90275 1.14929 1.20953 0.91192 0.94193 1.03699 1.22386 0.92617 0.95330 1.03172 1.21531 0.97999 0.85734 1.05537 0.90569 0.84898 0.81669 0.81634 0.84815 0.90087 0.88775 0.89319 0.85866 0.87690 0.86085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.90 13.21 21.66 0.29 -48.62 16 2 C 0.04 2.27 5.49 84.92 0.47 2.74 16 3 Si 0.98 44.91 29.55 68.60 2.03 46.94 16 4 H -0.28 -13.67 7.11 99.48 0.71 -12.97 16 5 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 6 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 7 C -0.58 -33.61 9.27 67.99 0.63 -32.98 16 8 H 0.09 5.45 6.56 -2.91 -0.02 5.43 16 9 S 0.17 8.48 21.44 -56.49 -1.21 7.27 16 10 C 0.20 9.11 7.03 85.27 0.60 9.71 16 11 N -0.61 -32.64 8.61 -321.55 -2.77 -35.41 16 12 C 0.63 31.24 8.30 179.66 1.49 32.74 16 13 O -0.60 -33.73 17.13 -5.29 -0.09 -33.82 16 14 N -0.48 -17.31 2.65 -465.09 -1.23 -18.54 16 15 C 0.10 2.94 4.02 38.14 0.15 3.09 16 16 C -0.10 -2.42 9.97 22.39 0.22 -2.19 16 17 C -0.09 -1.72 9.82 22.27 0.22 -1.50 16 18 C -0.03 -0.52 6.32 22.34 0.14 -0.38 16 19 Cl -0.05 -0.80 28.95 -2.72 -0.08 -0.88 16 20 C -0.09 -1.71 9.82 22.27 0.22 -1.49 16 21 C -0.10 -2.39 9.97 22.39 0.22 -2.16 16 22 C 0.18 5.22 6.75 41.29 0.28 5.50 16 23 C -0.24 -8.17 6.05 -19.67 -0.12 -8.29 16 24 C -0.06 -1.37 6.49 30.50 0.20 -1.17 16 25 C -0.10 -1.21 7.13 31.57 0.22 -0.99 16 26 C -0.07 -1.08 6.36 30.52 0.19 -0.89 16 27 H 0.28 14.35 8.31 -92.70 -0.77 13.58 16 28 H 0.13 3.26 8.06 -2.91 -0.02 3.23 16 29 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 30 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 31 H 0.13 3.23 8.06 -2.91 -0.02 3.21 16 32 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.12 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -80.48 351.60 3.20 -77.28 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: 1.12 Total: 4.04 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 5.14 Total: 1.74 kcal Atomic # 7 Polarization: -98.85 SS G_CDS: -3.71 Total: -102.57 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -0.09 Total: -33.82 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 16 Polarization: 8.48 SS G_CDS: -1.21 Total: 7.27 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -0.08 Total: -0.88 kcal Total: -80.48 3.20 -77.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015840477.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.970 kcal (2) G-P(sol) polarization free energy of solvation -80.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds