Wall clock time and date at job start Tue Mar 31 2020 05:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31708 * 1 3 3 Si 1.86801 * 120.00012 * 2 1 4 4 H 1.48504 * 109.47113 * 240.00037 * 3 2 1 5 5 H 1.48491 * 109.47212 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47150 * 120.00284 * 3 2 1 7 7 C 1.38552 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00053 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99638 * 0.27050 * 7 2 1 10 10 C 1.76203 * 99.99743 * 179.72663 * 9 7 2 11 11 N 1.31700 * 126.38817 * 0.02562 * 10 9 7 12 12 N 1.28746 * 110.18735 * 180.02562 * 11 10 9 13 13 C 1.31153 * 109.82494 * 0.02562 * 12 11 10 14 14 C 1.46639 * 135.11768 * 179.97438 * 13 12 11 15 15 C 1.39272 * 122.06396 * 0.02562 * 14 13 12 16 16 C 1.37848 * 119.63822 * 179.97438 * 15 14 13 17 17 C 1.38843 * 120.53460 * 0.08361 * 16 15 14 18 18 C 1.37695 * 120.79707 * 359.93208 * 17 16 15 19 19 C 1.39745 * 119.79419 * 0.02745 * 18 17 16 20 20 N 1.35452 * 121.27792 * 179.97438 * 19 18 17 21 21 C 1.30714 * 122.21495 * 180.02562 * 20 19 18 22 22 C 1.47756 * 118.67719 * 179.97438 * 21 20 19 23 23 C 1.39623 * 120.14815 * 125.61841 * 22 21 20 24 24 C 1.37946 * 119.84798 * 179.76887 * 23 22 21 25 25 C 1.38372 * 120.14853 * 0.51161 * 24 23 22 26 26 C 1.38370 * 120.30059 * 359.74560 * 25 24 23 27 27 C 1.37943 * 120.14689 * 359.97438 * 26 25 24 28 28 N 1.36610 * 126.38553 * 179.71711 * 10 9 7 29 29 H 0.97006 * 120.00103 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.17957 * 359.97438 * 15 14 13 31 31 H 1.07992 * 119.73211 * 180.02562 * 16 15 14 32 32 H 1.08001 * 119.60264 * 179.97438 * 17 16 15 33 33 H 1.07996 * 120.10273 * 180.02562 * 18 17 16 34 34 H 1.07998 * 120.07223 * 0.03279 * 23 22 21 35 35 H 1.07997 * 119.92550 * 180.25722 * 24 23 22 36 36 H 1.07996 * 119.84848 * 179.75979 * 25 24 23 37 37 H 1.07997 * 119.92575 * 180.02562 * 26 25 24 38 38 H 1.08003 * 120.07261 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3171 0.0000 0.0000 3 14 2.2511 1.6177 0.0000 4 1 3.1049 1.6964 -1.2125 5 1 1.2862 2.7464 0.0006 6 1 3.1049 1.6964 1.2125 7 6 2.0098 -1.1999 -0.0005 8 1 3.0898 -1.1999 -0.0010 9 16 1.1288 -2.7258 -0.0084 10 6 2.4786 -3.8584 -0.0144 11 7 3.7586 -3.5484 -0.0123 12 7 4.4748 -4.6183 -0.0186 13 6 3.6969 -5.6742 -0.0256 14 6 3.9138 -7.1245 -0.0350 15 6 5.1905 -7.6811 -0.0379 16 6 5.3365 -9.0518 -0.0462 17 6 4.2221 -9.8799 -0.0535 18 6 2.9507 -9.3510 -0.0511 19 6 2.7754 -7.9646 -0.0419 20 7 1.5387 -7.4121 -0.0398 21 6 1.3535 -6.1182 -0.0317 22 6 -0.0302 -5.5999 -0.0307 23 6 -0.4418 -4.7019 0.9560 24 6 -1.7337 -4.2183 0.9483 25 6 -2.6239 -4.6293 -0.0281 26 6 -2.2240 -5.5232 -1.0057 27 6 -0.9334 -6.0102 -1.0131 28 7 2.3924 -5.2218 -0.0160 29 1 -0.4850 0.8401 0.0004 30 1 6.0613 -7.0423 -0.0336 31 1 6.3257 -9.4850 -0.0480 32 1 4.3539 -10.9518 -0.0604 33 1 2.0918 -10.0056 -0.0565 34 1 0.2508 -4.3834 1.7209 35 1 -2.0523 -3.5204 1.7084 36 1 -3.6352 -4.2506 -0.0272 37 1 -2.9236 -5.8396 -1.7651 38 1 -0.6224 -6.7075 -1.7769 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015868030.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:25 Heat of formation + Delta-G solvation = 154.470953 kcal Electronic energy + Delta-G solvation = -26784.903857 eV Core-core repulsion = 23105.725131 eV Total energy + Delta-G solvation = -3679.178726 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.074 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.85962 -39.72305 -38.99981 -36.93507 -33.38866 -32.77204 -32.43969 -31.39323 -30.79782 -29.50939 -28.95297 -25.84944 -24.91609 -23.95307 -23.23796 -22.43787 -21.85632 -20.85240 -19.52172 -18.72210 -17.80207 -16.87237 -16.29244 -16.27867 -16.00689 -15.28503 -15.04792 -14.93434 -14.69476 -14.41799 -13.85530 -13.63381 -13.48696 -13.30547 -13.14459 -12.80288 -12.14720 -12.03177 -11.92031 -11.61591 -11.33830 -11.21881 -11.12161 -10.98642 -10.94510 -10.49842 -10.40856 -10.28552 -10.23821 -10.04499 -9.41800 -9.32391 -8.86221 -8.65134 -8.45611 -8.05920 -6.87473 -6.58886 -4.34706 0.23798 0.78095 1.34219 1.59221 1.86369 2.12410 2.71516 2.93211 3.13986 3.16412 3.22017 3.25518 3.72196 3.84092 3.93938 4.03327 4.17684 4.51124 4.69028 4.82787 4.84946 4.94316 5.04564 5.07203 5.12467 5.20557 5.28379 5.46749 5.57071 5.59261 5.71314 5.81712 5.91616 5.98677 6.10037 6.18470 6.28074 6.31411 6.37299 6.52199 6.58981 6.68603 6.71606 6.91012 7.07286 7.44472 7.76127 8.23094 8.92078 9.02578 10.46974 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.011365 B = 0.004414 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.110483 B = 6341.762218 C = 8604.926131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.082 3.918 3 Si 0.931 3.069 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.557 4.557 8 H 0.105 0.895 9 S 0.197 5.803 10 C 0.169 3.831 11 N -0.282 5.282 12 N -0.255 5.255 13 C 0.172 3.828 14 C -0.042 4.042 15 C -0.074 4.074 16 C -0.120 4.120 17 C -0.104 4.104 18 C -0.088 4.088 19 C 0.110 3.890 20 N -0.483 5.483 21 C 0.444 3.556 22 C -0.077 4.077 23 C -0.056 4.056 24 C -0.106 4.106 25 C -0.090 4.090 26 C -0.130 4.130 27 C -0.062 4.062 28 N -0.449 5.449 29 H 0.277 0.723 30 H 0.138 0.862 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.138 0.862 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.494 -15.892 0.112 16.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.128 4.128 3 Si 0.756 3.244 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.705 4.705 8 H 0.123 0.877 9 S 0.437 5.563 10 C -0.198 4.198 11 N -0.126 5.126 12 N -0.095 5.095 13 C -0.091 4.091 14 C -0.047 4.047 15 C -0.095 4.095 16 C -0.138 4.138 17 C -0.124 4.124 18 C -0.108 4.108 19 C 0.000 4.000 20 N -0.198 5.198 21 C 0.178 3.822 22 C -0.081 4.081 23 C -0.079 4.079 24 C -0.124 4.124 25 C -0.109 4.109 26 C -0.149 4.149 27 C -0.082 4.082 28 N -0.144 5.144 29 H 0.086 0.914 30 H 0.156 0.844 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.156 0.844 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.021 -15.541 0.108 15.833 hybrid contribution 1.563 1.079 -0.053 1.900 sum -1.458 -14.462 0.055 14.535 Atomic orbital electron populations 1.69946 1.05986 1.28807 1.45962 1.25036 0.95184 0.99603 0.93006 0.85995 0.79194 0.79565 0.79659 1.19344 1.20637 1.19325 1.23488 0.97685 0.90338 1.58956 0.87687 1.83895 0.95384 0.94098 1.82970 1.28725 1.02828 0.83944 1.04331 1.74993 0.98326 1.17633 1.21639 1.74146 1.25800 0.93501 1.16060 1.23058 0.80785 0.95162 1.10060 1.18401 0.95434 0.86465 1.04390 1.21003 0.95697 0.95307 0.97452 1.21180 0.99194 0.92845 1.00574 1.21147 0.91853 1.00175 0.99196 1.20769 0.97982 0.91672 1.00353 1.18655 0.86723 0.94193 1.00471 1.68647 1.23399 1.07235 1.20471 1.20975 0.87530 0.84060 0.89594 1.18026 0.88775 1.01470 0.99795 1.21157 0.96598 0.92706 0.97424 1.20999 0.92734 0.99191 0.99494 1.21320 0.99704 0.95891 0.93946 1.20979 0.95658 0.98784 0.99435 1.21011 0.92698 0.97846 0.96630 1.45070 1.08092 1.06748 1.54522 0.91360 0.84440 0.85093 0.85063 0.84424 0.85246 0.84976 0.85675 0.85551 0.85689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.98 13.22 55.48 0.73 -22.25 16 2 C 0.08 2.13 5.49 -17.49 -0.10 2.04 16 3 Si 0.93 20.60 29.55 -169.99 -5.02 15.58 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.56 -15.05 9.37 30.85 0.29 -14.76 16 8 H 0.11 2.95 6.92 -52.49 -0.36 2.59 16 9 S 0.20 4.72 16.90 -107.50 -1.82 2.91 16 10 C 0.17 4.02 7.95 -87.92 -0.70 3.32 16 11 N -0.28 -7.14 11.03 30.76 0.34 -6.80 16 12 N -0.25 -5.94 12.24 32.39 0.40 -5.54 16 13 C 0.17 3.62 8.01 -153.92 -1.23 2.39 16 14 C -0.04 -0.72 5.89 -104.89 -0.62 -1.34 16 15 C -0.07 -1.02 9.86 -39.34 -0.39 -1.41 16 16 C -0.12 -1.26 10.02 -39.50 -0.40 -1.65 16 17 C -0.10 -1.03 10.00 -39.56 -0.40 -1.42 16 18 C -0.09 -1.08 10.02 -39.22 -0.39 -1.47 16 19 C 0.11 1.77 6.63 -84.47 -0.56 1.21 16 20 N -0.48 -8.29 10.15 -8.57 -0.09 -8.38 16 21 C 0.44 8.27 7.12 -154.59 -1.10 7.17 16 22 C -0.08 -1.30 4.88 -104.98 -0.51 -1.82 16 23 C -0.06 -0.94 6.19 -39.17 -0.24 -1.18 16 24 C -0.11 -1.55 10.03 -39.64 -0.40 -1.94 16 25 C -0.09 -1.15 10.04 -39.48 -0.40 -1.54 16 26 C -0.13 -1.62 10.03 -39.64 -0.40 -2.02 16 27 C -0.06 -0.90 9.73 -39.18 -0.38 -1.28 16 28 N -0.45 -9.55 3.02 -58.62 -0.18 -9.73 16 29 H 0.28 6.82 8.32 -40.82 -0.34 6.48 16 30 H 0.14 1.82 8.06 -52.49 -0.42 1.40 16 31 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 32 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.13 2.29 7.32 -52.49 -0.38 1.90 16 35 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 LS Contribution 345.71 15.07 5.21 5.21 Total: -1.00 -31.26 345.71 -11.61 -42.87 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -3.27 Total: 1.83 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -7.92 Total: -15.70 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: 1.20 Total: -52.70 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 4.72 SS G_CDS: -1.82 Total: 2.91 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.26 -11.61 -42.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015868030.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.338 kcal (2) G-P(sol) polarization free energy of solvation -31.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds