Wall clock time and date at job start Tue Mar 31 2020 06:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47238 * 2 1 4 4 C 1.53002 * 109.46902 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.46920 * 179.97438 * 4 3 2 6 6 C 1.37928 * 120.34239 * 264.99968 * 5 4 3 7 7 N 1.32149 * 121.73794 * 179.97438 * 6 5 4 8 8 C 1.32217 * 121.78367 * 0.02562 * 7 6 5 9 9 C 1.40621 * 120.09871 * 359.97438 * 8 7 6 10 10 C 1.39750 * 120.34431 * 84.97802 * 5 4 3 11 11 S 1.76200 * 121.17190 * 0.04430 * 10 5 4 12 12 C 1.76203 * 100.00203 * 89.99609 * 11 10 5 13 13 H 1.08002 * 119.99476 * 0.02562 * 12 11 10 14 14 C 1.38853 * 119.99755 * 179.97438 * 12 11 10 15 15 N 1.31509 * 120.00198 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99503 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47158 * 90.00218 * 16 14 12 18 18 H 1.48506 * 109.46924 * 209.99983 * 16 14 12 19 19 H 1.48493 * 109.47111 * 329.99564 * 16 14 12 20 20 C 1.46786 * 118.61522 * 179.74666 * 9 8 7 21 21 O 1.21648 * 120.89036 * 180.24946 * 20 9 8 22 22 N 1.35128 * 118.22211 * 0.47369 * 20 9 8 23 23 C 1.46499 * 119.46325 * 179.79706 * 22 20 9 24 24 C 1.34244 * 121.07603 * 359.52031 * 22 20 9 25 25 O 1.21572 * 118.55224 * 180.23472 * 24 22 20 26 26 N 1.34361 * 122.88979 * 0.25286 * 24 22 20 27 27 C 1.46498 * 119.63278 * 179.97438 * 26 24 22 28 28 H 1.08995 * 109.47226 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46991 * 300.00475 * 1 2 3 30 30 H 1.09007 * 109.46665 * 59.99780 * 1 2 3 31 31 H 1.09000 * 109.46991 * 239.99525 * 2 1 3 32 32 H 1.08994 * 109.46636 * 119.99956 * 2 1 3 33 33 H 1.08999 * 109.46998 * 59.99921 * 3 2 1 34 34 H 1.09002 * 109.47041 * 299.99816 * 3 2 1 35 35 H 1.08999 * 109.47263 * 60.00200 * 4 3 2 36 36 H 1.09002 * 109.47217 * 299.99825 * 4 3 2 37 37 H 1.07995 * 119.12657 * 359.97438 * 6 5 4 38 38 H 0.96998 * 119.99868 * 180.02562 * 15 14 12 39 39 H 1.09002 * 109.47391 * 179.72506 * 23 22 20 40 40 H 1.09001 * 109.46813 * 59.72562 * 23 22 20 41 41 H 1.09004 * 109.47041 * 299.72689 * 23 22 20 42 42 H 1.09000 * 109.47034 * 359.97438 * 27 26 24 43 43 H 1.08990 * 109.47547 * 119.99979 * 27 26 24 44 44 H 1.09003 * 109.46978 * 240.00069 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0724 2.8632 0.0000 6 6 4.4030 3.4848 -1.1860 7 7 4.8456 4.7295 -1.2187 8 6 4.9954 5.4445 -0.1167 9 6 4.6808 4.8856 1.1348 10 6 4.2078 3.5647 1.2011 11 16 3.8003 2.8182 2.7442 12 6 5.3595 2.1133 3.1644 13 1 6.2031 2.2341 2.5009 14 6 5.5039 1.4036 4.3491 15 7 4.4768 1.2570 5.1572 16 14 7.1573 0.6570 4.7949 17 1 7.9494 1.6397 5.5772 18 1 6.9444 -0.5671 5.6084 19 1 7.8921 0.3047 3.5535 20 6 4.8647 5.7066 2.3376 21 8 4.6099 5.2632 3.4413 22 7 5.3203 6.9697 2.1856 23 6 5.5096 7.8145 3.3674 24 6 5.6076 7.4611 0.9699 25 8 6.0187 8.6022 0.8867 26 7 5.4604 6.7475 -0.1590 27 6 5.7952 7.3555 -1.4491 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 3.9338 0.9284 -0.8891 36 1 3.9330 0.9287 0.8909 37 1 4.2974 2.9398 -2.1124 38 1 4.5779 0.7615 5.9849 39 1 5.8841 8.7909 3.0600 40 1 6.2284 7.3445 4.0386 41 1 4.5570 7.9366 3.8831 42 1 6.1409 8.3770 -1.2906 43 1 6.5825 6.7758 -1.9307 44 1 4.9107 7.3664 -2.0861 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015883620.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:53 Heat of formation + Delta-G solvation = -16.710720 kcal Electronic energy + Delta-G solvation = -29221.971519 eV Core-core repulsion = 25266.175311 eV Total energy + Delta-G solvation = -3955.796208 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 349.125 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.04593 -39.64698 -38.70373 -36.52812 -35.17881 -34.93465 -32.63820 -32.58435 -31.64022 -28.65931 -28.06102 -26.54425 -25.68014 -24.47024 -24.34411 -22.29211 -22.18094 -20.72778 -19.86556 -18.26499 -17.85291 -17.46572 -16.95163 -15.97684 -15.90547 -15.19615 -15.02532 -14.91983 -14.83893 -14.74070 -14.18053 -14.10260 -13.78276 -13.56675 -13.04167 -12.90952 -12.84307 -12.66976 -12.56793 -12.27936 -12.22601 -11.89955 -11.39234 -11.17249 -11.13288 -11.00261 -10.92821 -10.85059 -10.64285 -10.31785 -10.27567 -10.20316 -10.11097 -9.75444 -9.50275 -9.27417 -9.10540 -8.47961 -8.01068 -6.51173 -6.35848 -4.02298 0.75844 1.17811 2.03751 2.32520 2.88266 3.11622 3.15688 3.17584 3.22172 3.31000 3.97611 4.14113 4.19001 4.51262 4.89353 5.01194 5.12902 5.18139 5.23199 5.28998 5.34994 5.37969 5.39510 5.42126 5.46748 5.51104 5.53309 5.65184 5.72073 5.75426 5.84765 5.92549 6.00389 6.01204 6.07665 6.09573 6.28445 6.35865 6.48811 6.51298 6.66025 6.75035 6.88326 7.37136 7.48494 7.71979 7.89562 8.19986 8.22835 9.09880 10.71404 Molecular weight = 349.12amu Principal moments of inertia in cm(-1) A = 0.008180 B = 0.005301 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3422.119285 B = 5280.713591 C = 7525.384257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.109 4.109 4 C -0.075 4.075 5 C -0.132 4.132 6 C 0.153 3.847 7 N -0.514 5.514 8 C 0.378 3.622 9 C -0.209 4.209 10 C 0.029 3.971 11 S 0.026 5.974 12 C -0.517 4.517 13 H 0.073 0.927 14 C 0.079 3.921 15 N -0.864 5.864 16 Si 0.918 3.082 17 H -0.276 1.276 18 H -0.280 1.280 19 H -0.271 1.271 20 C 0.543 3.457 21 O -0.417 6.417 22 N -0.565 5.565 23 C 0.082 3.918 24 C 0.710 3.290 25 O -0.555 6.555 26 N -0.532 5.532 27 C 0.094 3.906 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.066 0.934 36 H 0.104 0.896 37 H 0.164 0.836 38 H 0.271 0.729 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.096 0.904 43 H 0.074 0.926 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.157 4.585 -11.927 12.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.147 4.147 4 C -0.113 4.113 5 C -0.139 4.139 6 C -0.005 4.005 7 N -0.229 5.229 8 C 0.143 3.857 9 C -0.221 4.221 10 C -0.090 4.090 11 S 0.263 5.737 12 C -0.665 4.665 13 H 0.091 0.909 14 C -0.131 4.131 15 N -0.499 5.499 16 Si 0.744 3.256 17 H -0.202 1.202 18 H -0.205 1.205 19 H -0.195 1.195 20 C 0.331 3.669 21 O -0.282 6.282 22 N -0.311 5.311 23 C -0.059 4.059 24 C 0.413 3.587 25 O -0.431 6.431 26 N -0.259 5.259 27 C -0.048 4.048 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.122 0.878 37 H 0.181 0.819 38 H 0.081 0.919 39 H 0.116 0.884 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.115 0.885 43 H 0.093 0.907 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.932 5.281 -11.268 12.785 hybrid contribution 2.060 -0.603 0.261 2.162 sum -0.872 4.678 -11.007 11.991 Atomic orbital electron populations 1.21766 0.96382 1.01087 1.01618 1.21501 0.95357 0.97052 1.02097 1.21556 0.94233 0.96769 1.02095 1.20612 0.95735 0.90757 1.04183 1.21316 1.01618 0.98509 0.92407 1.22545 0.91568 0.88538 0.97847 1.67062 1.19030 1.08310 1.28476 1.18370 0.92561 0.85036 0.89694 1.20561 1.12106 0.97695 0.91727 1.23439 0.89876 0.92291 1.03376 1.83438 1.16413 1.63641 1.10223 1.22734 0.96040 1.37977 1.09720 0.90858 1.24913 0.97810 0.95552 0.94782 1.69907 1.29810 1.38879 1.11295 0.86167 0.82133 0.78581 0.78743 1.20189 1.20509 1.19533 1.18224 0.78219 0.80193 0.90237 1.91145 1.42734 1.68845 1.25518 1.46352 1.61686 1.15512 1.07579 1.21880 1.03504 0.95387 0.85124 1.15456 0.78665 0.84443 0.80128 1.90921 1.50725 1.16271 1.85146 1.44337 1.62624 1.10644 1.08256 1.21829 1.02091 0.99773 0.81067 0.93194 0.92564 0.93267 0.92554 0.91259 0.90887 0.92945 0.91586 0.87785 0.81897 0.91921 0.88369 0.90359 0.90404 0.88529 0.90687 0.90674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 37.16 0.37 -1.31 16 2 C -0.12 -1.51 5.93 -26.73 -0.16 -1.67 16 3 C -0.11 -1.50 5.20 -26.73 -0.14 -1.64 16 4 C -0.07 -1.13 4.88 -27.88 -0.14 -1.26 16 5 C -0.13 -2.22 5.18 -104.17 -0.54 -2.76 16 6 C 0.15 2.21 10.78 -17.53 -0.19 2.02 16 7 N -0.51 -8.05 9.66 -12.23 -0.12 -8.16 16 8 C 0.38 6.54 7.38 -155.18 -1.15 5.40 16 9 C -0.21 -4.17 5.90 -104.71 -0.62 -4.79 16 10 C 0.03 0.61 5.54 -38.18 -0.21 0.40 16 11 S 0.03 0.64 17.07 -107.50 -1.84 -1.20 16 12 C -0.52 -13.97 9.47 30.96 0.29 -13.67 16 13 H 0.07 1.99 7.79 -52.49 -0.41 1.58 16 14 C 0.08 2.15 5.49 -17.46 -0.10 2.05 16 15 N -0.86 -24.43 13.22 55.49 0.73 -23.70 16 16 Si 0.92 20.93 29.55 -169.99 -5.02 15.91 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 20 C 0.54 11.19 7.62 -12.65 -0.10 11.09 16 21 O -0.42 -9.91 14.33 5.23 0.07 -9.84 16 22 N -0.56 -9.92 2.96 -129.75 -0.38 -10.31 16 23 C 0.08 1.18 10.01 59.85 0.60 1.78 16 24 C 0.71 12.03 8.10 -87.77 -0.71 11.32 16 25 O -0.56 -9.60 14.59 5.30 0.08 -9.52 16 26 N -0.53 -8.41 3.05 -128.33 -0.39 -8.80 16 27 C 0.09 1.11 10.07 59.85 0.60 1.72 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.50 8.14 -51.92 -0.42 0.07 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.18 7.91 -51.93 -0.41 0.76 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.80 8.06 -51.93 -0.42 0.39 16 36 H 0.10 1.90 7.15 -51.93 -0.37 1.53 16 37 H 0.16 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.10 1.26 6.76 -51.93 -0.35 0.91 16 40 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.10 1.09 6.78 -51.93 -0.35 0.74 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 379.43 15.07 5.72 5.72 Total: -1.00 -31.76 379.43 -9.42 -41.18 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -6.10 Total: 0.06 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: -2.18 Total: 8.66 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.16 Total: -50.97 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: 0.15 Total: -19.36 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 0.64 SS G_CDS: -1.84 Total: -1.20 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.76 -9.42 -41.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015883620.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.469 kcal (2) G-P(sol) polarization free energy of solvation -31.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds