Wall clock time and date at job start Tue Mar 31 2020 05:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.34243 * 119.61332 * 2 1 4 4 C 1.43191 * 119.26641 * 359.61525 * 3 2 1 5 5 N 3.43033 * 78.84252 * 359.74454 * 2 1 3 6 6 C 1.50223 * 121.47029 * 179.63383 * 3 2 1 7 7 C 1.50700 * 109.21472 * 255.83690 * 6 3 2 8 8 C 1.38284 * 119.92247 * 60.35827 * 7 6 3 9 9 C 1.38111 * 120.06978 * 179.72706 * 8 7 6 10 10 C 1.38909 * 119.92729 * 0.55103 * 9 8 7 11 11 N 1.39667 * 120.07579 * 179.70536 * 10 9 8 12 12 C 1.46503 * 120.00161 * 180.02562 * 11 10 9 13 13 C 1.46504 * 120.00101 * 0.02562 * 11 10 9 14 14 C 1.50694 * 109.46963 * 90.00349 * 13 11 10 15 15 H 1.08002 * 120.00069 * 359.97438 * 14 13 11 16 16 C 1.37875 * 120.00150 * 180.02562 * 14 13 11 17 17 N 1.31523 * 119.99844 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00282 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47347 * 59.99855 * 18 16 14 20 20 H 1.48505 * 109.47203 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47124 * 299.99555 * 18 16 14 22 22 C 1.38910 * 119.84749 * 359.72284 * 10 9 8 23 23 C 1.38101 * 119.92910 * 0.02562 * 22 10 9 24 24 C 1.50224 * 110.76347 * 16.15390 * 6 3 2 25 25 C 1.43199 * 119.25863 * 163.80228 * 24 6 3 26 26 N 5.32568 * 168.00637 * 256.40999 * 2 1 3 27 27 C 1.34166 * 121.52414 * 343.78000 * 24 6 3 28 28 C 1.50702 * 119.62708 * 180.44126 * 27 24 6 29 29 N 1.37148 * 120.75748 * 0.50538 * 27 24 6 30 30 H 1.09002 * 109.46923 * 89.99766 * 1 2 3 31 31 H 1.08993 * 109.47295 * 210.00400 * 1 2 3 32 32 H 1.09000 * 109.46801 * 329.99950 * 1 2 3 33 33 H 1.09002 * 109.21035 * 136.47278 * 6 3 2 34 34 H 1.08001 * 119.96610 * 359.97438 * 8 7 6 35 35 H 1.07999 * 120.03406 * 180.27237 * 9 8 7 36 36 H 1.08996 * 109.47082 * 89.99569 * 12 11 10 37 37 H 1.09001 * 109.47400 * 209.99908 * 12 11 10 38 38 H 1.09001 * 109.46644 * 329.99436 * 12 11 10 39 39 H 1.09001 * 109.46926 * 209.99950 * 13 11 10 40 40 H 1.08998 * 109.46999 * 330.00431 * 13 11 10 41 41 H 0.96995 * 120.00011 * 180.02562 * 17 16 14 42 42 H 1.07997 * 120.03703 * 179.97438 * 22 10 9 43 43 H 1.08005 * 119.96977 * 180.02562 * 23 22 10 44 44 H 1.09002 * 109.46817 * 180.02562 * 28 27 24 45 45 H 1.08996 * 109.47412 * 300.06180 * 28 27 24 46 46 H 1.08995 * 109.46874 * 60.06342 * 28 27 24 47 47 H 0.97000 * 119.89269 * 197.59226 * 29 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1704 1.1671 0.0000 4 6 1.4304 2.3929 -0.0084 5 7 0.8433 3.3655 -0.0150 6 6 3.6719 1.2158 0.0082 7 6 4.1486 1.5842 1.3895 8 6 3.8361 0.7744 2.4659 9 6 4.2762 1.1061 3.7323 10 6 5.0239 2.2608 3.9258 11 7 5.4653 2.6025 5.2060 12 6 6.2532 3.8209 5.4083 13 6 5.1404 1.7425 6.3467 14 6 6.2244 0.7105 6.5225 15 1 7.0705 0.6964 5.8513 16 6 6.1356 -0.2163 7.5394 17 7 5.1050 -0.1994 8.3564 18 14 7.4789 -1.4960 7.7568 19 1 8.7755 -0.8156 8.0038 20 1 7.1497 -2.3677 8.9132 21 1 7.5797 -2.3218 6.5268 22 6 5.3311 3.0750 2.8431 23 6 4.8923 2.7347 1.5786 24 6 4.2500 -0.1167 -0.3752 25 6 5.6254 -0.1966 -0.7658 26 7 6.7165 -0.2600 -1.0757 27 6 3.5076 -1.2341 -0.3598 28 6 4.1341 -2.5501 -0.7430 29 7 2.1847 -1.1924 -0.0004 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 4.0101 1.9711 -0.7012 34 1 3.2506 -0.1206 2.3156 35 1 4.0356 0.4709 4.5719 36 1 5.5840 4.6563 5.6142 37 1 6.9294 3.6806 6.2517 38 1 6.8325 4.0323 4.5095 39 1 5.0664 2.3489 7.2494 40 1 4.1889 1.2427 6.1655 41 1 5.0427 -0.8511 9.0720 42 1 5.9118 3.9736 2.9900 43 1 5.1312 3.3670 0.7363 44 1 3.3878 -3.3416 -0.6736 45 1 4.5075 -2.4907 -1.7653 46 1 4.9600 -2.7699 -0.0667 47 1 1.7270 -2.0087 0.2546 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019419657.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:57 Heat of formation + Delta-G solvation = 119.278738 kcal Electronic energy + Delta-G solvation = -29735.790649 eV Core-core repulsion = 25883.999192 eV Total energy + Delta-G solvation = -3851.791457 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.165 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.00743 -38.78507 -36.94601 -36.50280 -35.81008 -34.04416 -33.47622 -32.54806 -30.44037 -30.10469 -28.66933 -27.85576 -27.75852 -25.49015 -23.91766 -22.83760 -22.39593 -21.47952 -21.25257 -19.62215 -17.54856 -16.85256 -16.58808 -16.44800 -16.06824 -15.92810 -15.29019 -15.01183 -14.32793 -14.28729 -14.11373 -13.74116 -13.70658 -13.50625 -13.26655 -13.11885 -13.08461 -12.99243 -12.88745 -12.75165 -12.69768 -12.69605 -12.56325 -12.17998 -12.11481 -12.05111 -11.55598 -11.43992 -11.33850 -11.24158 -11.01014 -10.82401 -10.67350 -10.26314 -9.89633 -9.76388 -9.40346 -8.77231 -8.50926 -8.24410 -7.67421 -6.45376 -6.01644 -4.17948 0.77128 1.61061 2.13761 2.26367 2.49417 2.81986 2.91435 3.27113 3.31179 3.35204 3.41840 3.49046 4.02358 4.08095 4.16239 4.29668 4.36243 4.41034 4.63521 4.74023 4.83547 5.05731 5.11792 5.20749 5.31245 5.34384 5.36714 5.44704 5.52083 5.59808 5.60693 5.66222 5.77520 5.84427 6.02900 6.04886 6.10358 6.29476 6.40403 6.45481 6.65201 6.72179 6.95635 7.01154 7.04686 7.20004 7.27006 7.35873 7.60755 7.64895 7.69419 7.80548 8.15423 8.27627 8.50017 8.91184 9.48817 10.94887 Molecular weight = 348.16amu Principal moments of inertia in cm(-1) A = 0.009744 B = 0.003353 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.832667 B = 8347.514403 C = 9092.405013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.191 3.809 3 C -0.130 4.130 4 C 0.275 3.725 5 N -0.437 5.437 6 C 0.098 3.902 7 C -0.171 4.171 8 C -0.052 4.052 9 C -0.187 4.187 10 C 0.242 3.758 11 N -0.615 5.615 12 C 0.098 3.902 13 C 0.250 3.750 14 C -0.531 4.531 15 H 0.059 0.941 16 C 0.063 3.937 17 N -0.895 5.895 18 Si 0.895 3.105 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.276 1.276 22 C -0.220 4.220 23 C -0.063 4.063 24 C -0.130 4.130 25 C 0.273 3.727 26 N -0.435 5.435 27 C 0.191 3.809 28 C -0.128 4.128 29 N -0.631 5.631 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.107 0.893 35 H 0.131 0.869 36 H 0.035 0.965 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.030 0.970 40 H 0.036 0.964 41 H 0.264 0.736 42 H 0.113 0.887 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.421 -3.970 -18.499 21.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.084 3.916 3 C -0.141 4.141 4 C -0.039 4.039 5 N -0.114 5.114 6 C 0.077 3.923 7 C -0.174 4.174 8 C -0.071 4.071 9 C -0.210 4.210 10 C 0.135 3.865 11 N -0.321 5.321 12 C -0.046 4.046 13 C 0.130 3.870 14 C -0.570 4.570 15 H 0.077 0.923 16 C -0.139 4.139 17 N -0.534 5.534 18 Si 0.723 3.277 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.243 4.243 23 C -0.082 4.082 24 C -0.140 4.140 25 C -0.041 4.041 26 N -0.112 5.112 27 C 0.084 3.916 28 C -0.186 4.186 29 N -0.246 5.246 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.125 0.875 35 H 0.148 0.852 36 H 0.054 0.946 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.048 0.952 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.131 0.869 43 H 0.125 0.875 44 H 0.097 0.903 45 H 0.107 0.893 46 H 0.109 0.891 47 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -8.625 -2.560 -18.590 20.653 hybrid contribution 0.559 -1.322 0.677 1.587 sum -8.065 -3.882 -17.913 20.025 Atomic orbital electron populations 1.21094 0.88519 1.04807 1.04128 1.19520 0.93403 0.84905 0.93782 1.16865 0.93467 0.85741 1.18046 1.25224 0.92854 0.92760 0.93087 1.81236 1.09319 1.10209 1.10668 1.16746 0.87637 0.92832 0.95049 1.19234 1.06290 0.98285 0.93580 1.20466 0.97403 0.97592 0.91620 1.20845 1.03892 0.98441 0.97810 1.17955 0.90936 0.92429 0.85171 1.47097 1.54905 1.24562 1.05502 1.21474 0.94944 0.86816 1.01373 1.19270 0.96462 0.88848 0.82419 1.21552 1.07410 1.14095 1.13933 0.92320 1.24944 0.95897 0.97564 0.95540 1.69925 1.29304 1.36458 1.17757 0.86602 0.82133 0.81355 0.77647 1.20238 1.21185 1.20108 1.20528 1.08943 1.02553 0.92249 1.20525 0.96357 0.95448 0.95893 1.16820 0.86584 0.95430 1.15200 1.25235 0.92342 0.93567 0.92984 1.81233 1.11430 1.07580 1.10907 1.19503 0.83453 0.95557 0.93076 1.21086 1.01846 0.92137 1.03481 1.41100 1.08560 1.08876 1.66090 0.89292 0.89998 0.89526 0.89914 0.87518 0.85154 0.94609 0.91474 0.92676 0.95245 0.94632 0.92625 0.86909 0.87485 0.90303 0.89334 0.89107 0.74142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.61 9.65 36.01 0.35 -0.27 16 2 C 0.19 1.34 6.74 -81.62 -0.55 0.79 16 3 C -0.13 -1.32 4.70 -104.34 -0.49 -1.81 16 4 C 0.27 3.36 13.42 -22.48 -0.30 3.06 16 5 N -0.44 -6.30 18.54 41.84 0.78 -5.52 16 6 C 0.10 1.14 2.33 -94.54 -0.22 0.92 16 7 C -0.17 -2.54 4.62 -104.59 -0.48 -3.02 16 8 C -0.05 -0.84 8.91 -39.61 -0.35 -1.19 16 9 C -0.19 -3.70 9.21 -39.38 -0.36 -4.07 16 10 C 0.24 4.92 6.55 -83.79 -0.55 4.37 16 11 N -0.62 -13.28 2.99 -181.00 -0.54 -13.82 16 12 C 0.10 1.76 10.19 59.85 0.61 2.37 16 13 C 0.25 6.25 4.91 -5.19 -0.03 6.22 16 14 C -0.53 -14.43 9.39 -34.44 -0.32 -14.76 16 15 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 17 N -0.90 -25.38 13.29 55.43 0.74 -24.64 16 18 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 C -0.22 -3.92 9.21 -39.38 -0.36 -4.28 16 23 C -0.06 -1.01 9.66 -39.61 -0.38 -1.39 16 24 C -0.13 -1.36 4.72 -104.36 -0.49 -1.85 16 25 C 0.27 3.51 13.98 -22.47 -0.31 3.20 16 26 N -0.43 -6.60 18.54 41.84 0.78 -5.82 16 27 C 0.19 1.40 6.73 -81.65 -0.55 0.85 16 28 C -0.13 -0.68 9.05 36.01 0.33 -0.36 16 29 N -0.63 -3.41 5.35 -5.36 -0.03 -3.44 16 30 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.22 8.13 -51.93 -0.42 -0.21 16 32 H 0.09 0.57 6.90 -51.93 -0.36 0.21 16 33 H 0.08 0.94 7.85 -51.93 -0.41 0.53 16 34 H 0.11 1.48 8.05 -52.49 -0.42 1.06 16 35 H 0.13 2.84 6.14 -52.49 -0.32 2.51 16 36 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 38 H 0.05 0.89 6.20 -51.93 -0.32 0.57 16 39 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 40 H 0.04 0.93 6.20 -51.93 -0.32 0.61 16 41 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.11 1.85 6.14 -52.49 -0.32 1.53 16 43 H 0.11 1.49 7.93 -52.48 -0.42 1.07 16 44 H 0.08 0.20 8.00 -51.93 -0.42 -0.21 16 45 H 0.09 0.46 8.06 -51.93 -0.42 0.04 16 46 H 0.09 0.60 8.07 -51.93 -0.42 0.18 16 47 H 0.42 0.95 8.69 -40.82 -0.35 0.60 16 LS Contribution 403.90 15.07 6.09 6.09 Total: -1.00 -33.39 403.90 -7.94 -41.34 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -6.15 Total: -0.74 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -4.57 Total: -9.59 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: 1.72 Total: -53.25 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.39 -7.94 -41.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019419657.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.614 kcal (2) G-P(sol) polarization free energy of solvation -33.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds