Wall clock time and date at job start Tue Mar 31 2020 05:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47193 * 2 1 4 4 C 1.50703 * 109.46907 * 180.02562 * 3 2 1 5 5 O 1.21311 * 120.00145 * 359.72742 * 4 3 2 6 6 C 1.46751 * 119.99680 * 180.02562 * 4 3 2 7 7 C 1.40155 * 120.08883 * 353.50371 * 6 4 3 8 8 C 1.37634 * 119.87556 * 179.67740 * 7 6 4 9 9 F 1.35105 * 119.97397 * 180.34623 * 8 7 6 10 10 C 1.39519 * 120.05296 * 0.62567 * 8 7 6 11 11 N 1.39032 * 119.90680 * 179.69755 * 10 8 7 12 12 C 1.46957 * 110.99776 * 243.77662 * 11 10 8 13 13 C 1.53045 * 109.36498 * 176.81603 * 12 11 10 14 14 N 1.46958 * 109.36566 * 58.39737 * 13 12 11 15 15 C 1.46907 * 110.99699 * 176.81158 * 14 13 12 16 16 C 1.50701 * 109.46985 * 59.13316 * 15 14 13 17 17 H 1.07996 * 119.99848 * 355.64126 * 16 15 14 18 18 C 1.37872 * 119.99895 * 175.64135 * 16 15 14 19 19 N 1.31519 * 120.00336 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00069 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47106 * 90.00167 * 20 18 16 22 22 H 1.48500 * 109.47483 * 210.00029 * 20 18 16 23 23 H 1.48499 * 109.47241 * 330.00296 * 20 18 16 24 24 C 1.46956 * 110.88292 * 300.67814 * 14 13 12 25 25 C 1.46962 * 111.00057 * 119.98000 * 11 10 8 26 26 C 1.39196 * 120.17910 * 359.67073 * 10 8 7 27 27 C 1.37558 * 120.12704 * 0.02562 * 26 10 8 28 28 C 1.50693 * 120.03294 * 179.97438 * 27 26 10 29 29 H 1.09001 * 109.47445 * 59.99669 * 1 2 3 30 30 H 1.09000 * 109.47615 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47100 * 299.99837 * 1 2 3 32 32 H 1.09003 * 109.47100 * 240.00163 * 2 1 3 33 33 H 1.09000 * 109.46932 * 120.00279 * 2 1 3 34 34 H 1.08999 * 109.46514 * 60.00280 * 3 2 1 35 35 H 1.08994 * 109.46997 * 299.99856 * 3 2 1 36 36 H 1.08001 * 120.06731 * 359.97438 * 7 6 4 37 37 H 1.09002 * 109.48510 * 296.77906 * 12 11 10 38 38 H 1.08993 * 109.49015 * 56.84029 * 12 11 10 39 39 H 1.09003 * 109.48628 * 298.43037 * 13 12 11 40 40 H 1.08997 * 109.50877 * 178.37883 * 13 12 11 41 41 H 1.09002 * 109.46928 * 179.12919 * 15 14 13 42 42 H 1.08997 * 109.47489 * 299.13106 * 15 14 13 43 43 H 0.96992 * 120.00110 * 179.97438 * 19 18 16 44 44 H 1.08994 * 109.49052 * 299.35953 * 24 14 13 45 45 H 1.08997 * 109.48638 * 179.28686 * 24 14 13 46 46 H 1.08999 * 109.48433 * 303.15221 * 25 11 10 47 47 H 1.08999 * 109.48976 * 63.18804 * 25 11 10 48 48 H 1.08003 * 119.93411 * 180.02562 * 26 10 8 49 49 H 1.09005 * 109.46980 * 263.09363 * 28 27 26 50 50 H 1.09001 * 109.47314 * 23.09172 * 28 27 26 51 51 H 1.09004 * 109.47557 * 143.09456 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 8 4.1535 0.3918 0.0040 6 6 4.2808 2.7133 -0.0002 7 6 3.5885 3.9244 -0.1364 8 6 4.2804 5.1141 -0.1287 9 9 3.6145 6.2831 -0.2528 10 6 5.6696 5.1137 0.0013 11 7 6.3660 6.3170 0.0023 12 6 7.2660 6.4056 -1.1561 13 6 7.9528 7.7733 -1.1617 14 7 8.6959 7.9505 0.0937 15 6 9.4319 9.2220 0.0947 16 6 8.4632 10.3632 -0.0790 17 1 7.4162 10.1615 -0.2505 18 6 8.9136 11.6649 -0.0190 19 7 8.0684 12.6610 -0.1711 20 14 10.7245 12.0139 0.2783 21 1 11.4342 12.0905 -1.0239 22 1 10.8683 13.3054 0.9971 23 1 11.3107 10.9232 1.0980 24 6 7.7960 7.8621 1.2521 25 6 7.1092 6.4943 1.2577 26 6 6.3599 3.9120 0.1305 27 6 5.6753 2.7189 0.1300 28 6 6.4249 1.4191 0.2694 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6766 1.9562 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 2.5137 3.9243 -0.2423 37 1 8.0194 5.6206 -1.0920 38 1 6.6906 6.2838 -2.0737 39 1 7.2011 8.5573 -1.2532 40 1 8.6425 7.8308 -2.0038 41 1 9.9605 9.3350 1.0413 42 1 10.1499 9.2268 -0.7253 43 1 8.3852 13.5767 -0.1285 44 1 7.0425 8.6470 1.1880 45 1 8.3715 7.9838 2.1697 46 1 6.4195 6.4372 2.0998 47 1 7.8606 5.7100 1.3494 48 1 7.4352 3.9163 0.2313 49 1 6.5939 0.9894 -0.7180 50 1 7.3835 1.6027 0.7547 51 1 5.8395 0.7248 0.8723 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019813009.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:03 Heat of formation + Delta-G solvation = -45.849037 kcal Electronic energy + Delta-G solvation = -30816.766876 eV Core-core repulsion = 26630.586060 eV Total energy + Delta-G solvation = -4186.180816 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 348.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -48.76243 -40.77289 -39.60139 -37.85999 -35.38229 -34.91771 -32.62416 -32.44625 -30.90865 -30.52561 -28.77181 -27.75787 -26.84606 -25.38564 -23.44911 -23.12698 -22.68219 -21.43683 -21.00015 -20.12101 -19.11495 -17.66758 -17.09773 -16.80527 -16.61241 -16.21079 -15.65368 -15.56836 -14.98938 -14.85021 -14.60412 -14.50414 -14.39571 -14.35410 -14.21941 -13.74836 -13.46490 -13.40648 -13.26146 -12.94303 -12.44163 -12.42719 -12.34027 -12.19205 -12.13930 -12.06960 -11.87323 -11.79258 -11.52318 -11.34658 -11.14195 -10.99888 -10.87766 -10.63987 -10.34253 -10.24346 -9.90261 -9.75678 -9.50953 -9.18314 -8.66869 -8.61536 -8.46463 -7.28123 -6.11450 -4.11971 0.21884 0.93964 2.00841 3.25883 3.27359 3.33784 3.36397 3.54437 3.72477 4.12990 4.34053 4.37560 4.47529 4.56795 4.59354 4.77897 4.83498 4.88360 5.05685 5.10774 5.12859 5.20750 5.25384 5.28340 5.33958 5.40645 5.48810 5.50987 5.54718 5.60744 5.62509 5.66181 5.70059 5.73792 5.78094 5.88582 5.89734 5.96004 6.03166 6.13921 6.20280 6.37694 6.50965 6.68845 6.79640 6.84367 7.02096 7.06016 7.20319 7.30270 7.52328 7.97575 8.00458 8.42803 8.92076 9.50593 11.01299 Molecular weight = 348.20amu Principal moments of inertia in cm(-1) A = 0.025731 B = 0.002126 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.914198 B =13165.616015 C =13897.569150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.168 4.168 4 C 0.398 3.602 5 O -0.447 6.447 6 C -0.161 4.161 7 C -0.103 4.103 8 C 0.104 3.896 9 F -0.122 7.122 10 C 0.108 3.892 11 N -0.506 5.506 12 C 0.066 3.934 13 C 0.061 3.939 14 N -0.536 5.536 15 C 0.153 3.847 16 C -0.552 4.552 17 H 0.078 0.922 18 C 0.072 3.928 19 N -0.897 5.897 20 Si 0.878 3.122 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.264 1.264 24 C 0.062 3.938 25 C 0.066 3.934 26 C -0.139 4.139 27 C -0.024 4.024 28 C -0.120 4.120 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.145 0.855 37 H 0.042 0.958 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.031 0.969 42 H 0.025 0.975 43 H 0.263 0.737 44 H 0.058 0.942 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.043 0.957 48 H 0.138 0.862 49 H 0.077 0.923 50 H 0.061 0.939 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.881 -24.664 0.830 26.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.206 4.206 4 C 0.277 3.723 5 O -0.323 6.323 6 C -0.163 4.163 7 C -0.122 4.122 8 C 0.083 3.917 9 F -0.100 7.100 10 C 0.012 3.988 11 N -0.228 5.228 12 C -0.060 4.060 13 C -0.067 4.067 14 N -0.260 5.260 15 C 0.026 3.974 16 C -0.590 4.590 17 H 0.096 0.904 18 C -0.131 4.131 19 N -0.536 5.536 20 Si 0.705 3.295 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.189 1.189 24 C -0.067 4.067 25 C -0.060 4.060 26 C -0.159 4.159 27 C -0.026 4.026 28 C -0.176 4.176 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.163 0.837 37 H 0.061 0.939 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.049 0.951 42 H 0.043 0.957 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.061 0.939 48 H 0.155 0.845 49 H 0.095 0.905 50 H 0.080 0.920 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.568 -24.935 0.827 27.095 hybrid contribution 0.710 1.026 0.062 1.249 sum -9.857 -23.909 0.889 25.877 Atomic orbital electron populations 1.21791 0.95383 1.01965 1.01959 1.21342 0.95684 0.94996 1.03270 1.22109 0.93589 0.99997 1.04875 1.22268 0.91302 0.87376 0.71324 1.90497 1.71263 1.34314 1.36187 1.20090 0.93743 0.94198 1.08220 1.21279 1.00775 0.90150 1.00023 1.17443 0.88939 0.81673 1.03624 1.91558 1.79809 1.45599 1.93028 1.19190 0.91931 0.90240 0.97441 1.59573 1.29717 1.28734 1.04726 1.22339 0.93248 0.98959 0.91426 1.21985 0.97015 0.94339 0.93402 1.62648 1.26019 1.35981 1.01379 1.20192 0.94240 0.85883 0.97066 1.21701 0.96610 0.90325 1.50407 0.90436 1.24979 0.97530 0.96256 0.94302 1.69931 1.34650 0.99143 1.49829 0.86812 0.85872 0.77903 0.78869 1.20232 1.21320 1.18855 1.21965 0.95628 0.94432 0.94670 1.22340 0.95347 0.98781 0.89566 1.21581 1.00969 0.91335 1.02039 1.20104 0.92290 0.95911 0.94261 1.21085 0.99363 0.93890 1.03298 0.92581 0.92468 0.92575 0.91373 0.91372 0.88175 0.88203 0.83701 0.93933 0.90850 0.92281 0.90835 0.95135 0.95683 0.92677 0.92405 0.90900 0.90832 0.93915 0.84465 0.90464 0.92006 0.89040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.91 37.16 0.37 -0.39 16 2 C -0.12 -0.73 5.22 -26.73 -0.14 -0.87 16 3 C -0.17 -1.02 4.39 -27.88 -0.12 -1.14 16 4 C 0.40 3.56 7.04 -30.87 -0.22 3.34 16 5 O -0.45 -4.90 12.95 5.53 0.07 -4.82 16 6 C -0.16 -1.60 5.87 -105.06 -0.62 -2.21 16 7 C -0.10 -1.00 9.43 -39.08 -0.37 -1.37 16 8 C 0.10 1.33 7.30 -39.32 -0.29 1.04 16 9 F -0.12 -1.82 17.07 2.25 0.04 -1.78 16 10 C 0.11 1.45 4.72 -83.76 -0.40 1.05 16 11 N -0.51 -7.89 4.49 -170.88 -0.77 -8.65 16 12 C 0.07 1.02 5.35 -3.77 -0.02 1.00 16 13 C 0.06 1.16 5.24 -3.77 -0.02 1.14 16 14 N -0.54 -10.82 4.92 -235.91 -1.16 -11.98 16 15 C 0.15 3.58 4.23 -4.97 -0.02 3.56 16 16 C -0.55 -15.12 8.23 -34.44 -0.28 -15.40 16 17 H 0.08 2.34 6.06 -52.49 -0.32 2.02 16 18 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 19 N -0.90 -27.20 13.96 55.43 0.77 -26.42 16 20 Si 0.88 21.14 27.56 -169.99 -4.68 16.46 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.26 -6.09 6.42 56.52 0.36 -5.73 16 24 C 0.06 1.16 5.32 -3.77 -0.02 1.14 16 25 C 0.07 1.01 5.30 -3.77 -0.02 0.99 16 26 C -0.14 -1.60 8.21 -39.47 -0.32 -1.93 16 27 C -0.02 -0.26 5.92 -104.19 -0.62 -0.88 16 28 C -0.12 -1.13 8.71 36.00 0.31 -0.82 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 33 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 34 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.10 0.47 7.88 -51.93 -0.41 0.06 16 36 H 0.15 1.00 6.97 -52.49 -0.37 0.63 16 37 H 0.04 0.61 7.41 -51.93 -0.38 0.23 16 38 H 0.07 1.06 8.13 -51.93 -0.42 0.64 16 39 H 0.06 1.31 6.45 -51.93 -0.34 0.97 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.03 0.73 6.87 -51.93 -0.36 0.37 16 42 H 0.03 0.59 7.79 -51.93 -0.40 0.18 16 43 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 45 H 0.07 1.31 8.12 -51.93 -0.42 0.89 16 46 H 0.07 1.05 8.13 -51.93 -0.42 0.63 16 47 H 0.04 0.61 7.21 -51.93 -0.37 0.24 16 48 H 0.14 1.51 7.01 -52.48 -0.37 1.14 16 49 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.06 0.51 8.03 -51.93 -0.42 0.10 16 51 H 0.09 0.92 5.87 -51.93 -0.30 0.61 16 LS Contribution 399.66 15.07 6.02 6.02 Total: -1.00 -30.89 399.66 -10.81 -41.70 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -8.22 Total: -0.73 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -2.89 Total: -9.80 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: -1.15 Total: -47.05 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: 0.07 Total: -4.82 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.68 Total: 16.46 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.89 -10.81 -41.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019813009.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.152 kcal (2) G-P(sol) polarization free energy of solvation -30.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds