Wall clock time and date at job start Tue Mar 31 2020 06:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86797 * 119.99919 * 2 1 4 4 H 1.48503 * 109.47374 * 240.00393 * 3 2 1 5 5 H 1.48502 * 109.46967 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47113 * 120.00193 * 3 2 1 7 7 C 1.37872 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99996 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00048 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47309 * 185.02204 * 9 7 2 11 11 C 1.46905 * 110.99887 * 295.08396 * 10 9 7 12 12 C 1.53242 * 109.33800 * 187.25343 * 11 10 9 13 13 N 1.47077 * 108.52209 * 306.16833 * 12 11 10 14 14 C 1.36777 * 120.87859 * 231.19030 * 13 12 11 15 15 N 1.31321 * 126.43899 * 0.02562 * 14 13 12 16 16 C 1.31359 * 120.48380 * 179.64842 * 15 14 13 17 17 O 1.21935 * 122.74828 * 180.36866 * 16 15 14 18 18 C 1.48011 * 114.50767 * 0.57691 * 16 15 14 19 19 C 1.33723 * 128.23676 * 179.76705 * 18 16 15 20 20 C 1.51271 * 120.85169 * 359.68101 * 19 18 16 21 21 C 1.53229 * 108.54128 * 231.32616 * 20 19 18 22 22 C 1.52958 * 109.40155 * 305.36982 * 21 20 19 23 23 C 1.52965 * 109.75706 * 63.63336 * 22 21 20 24 24 C 1.51272 * 120.85174 * 179.65776 * 19 18 16 25 25 S 1.77267 * 126.43476 * 179.97438 * 14 13 12 26 26 C 1.47074 * 118.23603 * 51.45877 * 13 12 11 27 27 C 1.46900 * 111.00044 * 59.38367 * 10 9 7 28 28 H 0.96995 * 120.00010 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47042 * 65.02357 * 9 7 2 30 30 H 1.08996 * 109.47321 * 305.02398 * 9 7 2 31 31 H 1.09001 * 109.49452 * 67.29087 * 11 10 9 32 32 H 1.09005 * 109.48935 * 307.21147 * 11 10 9 33 33 H 1.09005 * 109.62334 * 186.45949 * 12 11 10 34 34 H 1.09000 * 109.79019 * 65.97530 * 12 11 10 35 35 H 1.09004 * 109.62938 * 111.60442 * 20 19 18 36 36 H 1.09008 * 109.78395 * 351.13674 * 20 19 18 37 37 H 1.09000 * 109.48605 * 185.39217 * 21 20 19 38 38 H 1.09000 * 109.48189 * 65.34517 * 21 20 19 39 39 H 1.09003 * 109.41548 * 183.69679 * 22 21 20 40 40 H 1.08993 * 109.41907 * 303.56404 * 22 21 20 41 41 H 1.08998 * 109.48439 * 56.34459 * 23 22 21 42 42 H 1.09005 * 109.48332 * 176.38642 * 23 22 21 43 43 H 1.09004 * 109.62381 * 248.38898 * 24 19 18 44 44 H 1.08993 * 109.62263 * 8.77101 * 24 19 18 45 45 H 1.08996 * 109.63262 * 68.25250 * 26 13 12 46 46 H 1.09007 * 109.62782 * 188.83463 * 26 13 12 47 47 H 1.08999 * 109.49062 * 292.70465 * 27 10 9 48 48 H 1.08994 * 109.49673 * 52.78744 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2012 -3.6131 0.1201 11 6 3.0766 -3.6881 -1.0572 12 6 3.9249 -4.9619 -0.9784 13 7 4.6216 -4.9799 0.3168 14 6 5.9724 -5.1837 0.3845 15 7 6.7836 -5.3785 -0.6297 16 6 8.0697 -5.5561 -0.4297 17 8 8.8605 -5.7337 -1.3406 18 6 8.4796 -5.5279 0.9923 19 6 9.7057 -5.6816 1.5034 20 6 10.8962 -5.9270 0.6031 21 6 11.6502 -7.1580 1.1170 22 6 12.0056 -6.9574 2.5911 23 6 10.7256 -6.8574 3.4226 24 6 9.9377 -5.6140 2.9967 25 16 6.9571 -5.2332 1.8577 26 6 3.8263 -4.7790 1.5375 27 6 2.9827 -3.5066 1.3593 28 1 -0.4850 0.8400 -0.0004 29 1 0.6933 -2.5966 -0.9319 30 1 0.5590 -2.5192 0.8413 31 1 3.7306 -2.8164 -1.0804 32 1 2.4686 -3.7114 -1.9617 33 1 4.6555 -4.9658 -1.7873 34 1 3.2826 -5.8387 -1.0609 35 1 11.5555 -5.0591 0.6230 36 1 10.5567 -6.1052 -0.4173 37 1 12.5638 -7.2928 0.5379 38 1 11.0194 -8.0407 1.0120 39 1 12.5986 -7.8032 2.9392 40 1 12.5829 -6.0397 2.7031 41 1 10.1172 -7.7474 3.2618 42 1 10.9834 -6.7790 4.4788 43 1 10.5082 -4.7172 3.2383 44 1 8.9794 -5.5891 3.5152 45 1 3.1721 -5.6367 1.6937 46 1 4.4917 -4.6619 2.3929 47 1 3.6380 -2.6374 1.3025 48 1 2.3068 -3.3981 2.2075 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019940237.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:19 Heat of formation + Delta-G solvation = 13.833767 kcal Electronic energy + Delta-G solvation = -28351.773547 eV Core-core repulsion = 24533.134942 eV Total energy + Delta-G solvation = -3818.638605 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 349.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.12421 -39.24721 -38.29332 -36.36006 -34.60478 -32.83583 -32.40407 -31.41683 -31.11600 -28.70155 -27.10042 -25.75210 -23.83491 -23.70728 -23.33427 -22.24534 -21.86198 -20.31659 -19.84551 -18.55628 -18.01676 -17.00449 -16.44583 -15.85910 -15.61679 -15.37459 -14.92939 -14.81430 -14.68577 -14.62001 -14.55033 -14.24830 -13.99809 -13.79063 -13.33770 -13.20593 -12.89505 -12.75026 -12.50955 -12.18920 -12.06865 -11.77124 -11.49221 -11.40654 -11.29324 -11.18155 -11.14588 -10.96708 -10.86282 -10.79172 -10.73822 -10.44061 -10.34998 -10.03800 -9.83183 -9.79675 -9.11851 -8.56314 -8.54170 -8.08453 -7.48144 -6.16868 -4.26912 0.30452 0.66590 1.61477 1.64551 2.48811 3.20870 3.26566 3.29292 3.59554 3.94238 4.29994 4.32152 4.42262 4.52754 4.56661 4.64825 4.67249 4.84031 5.00435 5.01727 5.08669 5.12975 5.18758 5.22813 5.25900 5.31505 5.39172 5.46629 5.57027 5.58293 5.63989 5.64615 5.69854 5.85115 5.88790 5.91122 6.06754 6.17574 6.19868 6.38058 6.47191 6.48730 6.72705 7.01517 7.34754 7.69128 7.71281 7.77748 7.96861 8.05946 8.09835 8.81594 9.41361 10.88541 Molecular weight = 349.16amu Principal moments of inertia in cm(-1) A = 0.016966 B = 0.002424 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.001411 B =11549.579810 C =11885.314354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.068 3.932 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.277 1.277 7 C -0.557 4.557 8 H 0.055 0.945 9 C 0.189 3.811 10 N -0.541 5.541 11 C 0.047 3.953 12 C 0.115 3.885 13 N -0.518 5.518 14 C 0.484 3.516 15 N -0.658 5.658 16 C 0.557 3.443 17 O -0.481 6.481 18 C -0.258 4.258 19 C 0.039 3.961 20 C -0.108 4.108 21 C -0.114 4.114 22 C -0.124 4.124 23 C -0.114 4.114 24 C -0.098 4.098 25 S -0.051 6.051 26 C 0.110 3.890 27 C 0.050 3.950 28 H 0.265 0.735 29 H 0.032 0.968 30 H 0.039 0.961 31 H 0.047 0.953 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.077 0.923 45 H 0.093 0.907 46 H 0.084 0.916 47 H 0.051 0.949 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.673 -14.308 8.296 24.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.135 4.135 3 Si 0.716 3.284 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.596 4.596 8 H 0.073 0.927 9 C 0.064 3.936 10 N -0.265 5.265 11 C -0.083 4.083 12 C -0.009 4.009 13 N -0.227 5.227 14 C 0.108 3.892 15 N -0.411 5.411 16 C 0.338 3.662 17 O -0.358 6.358 18 C -0.376 4.376 19 C 0.030 3.970 20 C -0.147 4.147 21 C -0.152 4.152 22 C -0.162 4.162 23 C -0.152 4.152 24 C -0.136 4.136 25 S 0.189 5.811 26 C -0.012 4.012 27 C -0.080 4.080 28 H 0.074 0.926 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.106 0.894 33 H 0.119 0.881 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.129 0.871 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.109 0.891 44 H 0.095 0.905 45 H 0.111 0.889 46 H 0.103 0.897 47 H 0.069 0.931 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 16.990 -14.590 8.281 23.877 hybrid contribution 1.280 1.828 -0.511 2.289 sum 18.270 -12.762 7.770 23.601 Atomic orbital electron populations 1.69919 1.05998 1.27204 1.49434 1.24939 0.94773 0.99206 0.94602 0.86705 0.79721 0.83181 0.78752 1.20182 1.21070 1.20214 1.21650 0.93172 0.92057 1.52702 0.92670 1.19780 0.90507 0.85066 0.98291 1.62560 1.16732 1.47047 1.00153 1.22333 0.95383 0.94815 0.95747 1.22377 0.95650 1.00158 0.82684 1.46899 1.00619 1.64444 1.10779 1.24403 0.89246 0.84162 0.91381 1.66527 1.05455 1.38548 1.30554 1.18914 0.84394 0.76218 0.86723 1.90684 1.53063 1.45290 1.46713 1.25290 0.96506 1.16506 0.99334 1.22286 0.91838 0.86634 0.96222 1.21280 0.93654 0.98938 1.00844 1.21564 1.00181 0.97614 0.95809 1.21590 0.97227 1.02222 0.95141 1.21560 0.96490 0.97314 0.99836 1.21119 1.01819 0.99893 0.90749 1.85299 1.01305 1.84783 1.09693 1.22536 0.93795 1.01136 0.83734 1.22355 0.96357 0.93778 0.95485 0.92566 0.95003 0.94324 0.93441 0.89352 0.88090 0.89726 0.89574 0.87134 0.91006 0.91649 0.91535 0.91580 0.91449 0.91014 0.89053 0.90450 0.88901 0.89739 0.93077 0.89174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.84 13.29 55.43 0.74 -24.11 16 2 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 3 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.56 -14.26 7.75 -34.44 -0.27 -14.52 16 8 H 0.06 1.42 5.88 -52.49 -0.31 1.11 16 9 C 0.19 4.39 5.11 -4.98 -0.03 4.36 16 10 N -0.54 -9.99 4.83 -235.46 -1.14 -11.13 16 11 C 0.05 0.80 5.24 -3.70 -0.02 0.78 16 12 C 0.11 1.64 6.67 -3.60 -0.02 1.62 16 13 N -0.52 -7.35 3.06 -172.63 -0.53 -7.88 16 14 C 0.48 7.33 8.08 -88.08 -0.71 6.61 16 15 N -0.66 -11.54 9.55 -13.18 -0.13 -11.67 16 16 C 0.56 9.71 8.02 -13.75 -0.11 9.60 16 17 O -0.48 -9.27 15.25 4.98 0.08 -9.19 16 18 C -0.26 -3.57 6.46 -37.16 -0.24 -3.81 16 19 C 0.04 0.43 5.44 -100.37 -0.55 -0.11 16 20 C -0.11 -1.10 5.94 -27.48 -0.16 -1.26 16 21 C -0.11 -0.88 5.94 -26.63 -0.16 -1.04 16 22 C -0.12 -0.77 5.81 -26.77 -0.16 -0.92 16 23 C -0.11 -0.75 5.93 -26.63 -0.16 -0.91 16 24 C -0.10 -0.80 6.00 -27.48 -0.16 -0.97 16 25 S -0.05 -0.65 20.40 -107.50 -2.19 -2.84 16 26 C 0.11 1.38 6.67 -3.37 -0.02 1.36 16 27 C 0.05 0.81 5.17 -3.46 -0.02 0.79 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 30 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.05 0.93 6.92 -51.93 -0.36 0.57 16 32 H 0.09 1.49 8.05 -51.93 -0.42 1.07 16 33 H 0.10 1.50 7.33 -51.93 -0.38 1.12 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.11 1.44 5.16 -51.92 -0.27 1.17 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.08 0.66 6.85 -51.93 -0.36 0.30 16 45 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.08 0.92 6.66 -51.92 -0.35 0.58 16 47 H 0.05 0.95 6.79 -51.93 -0.35 0.60 16 48 H 0.09 1.43 8.11 -51.93 -0.42 1.01 16 LS Contribution 384.60 15.07 5.80 5.80 Total: -1.00 -30.51 384.60 -12.69 -43.20 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -7.41 Total: -1.20 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -2.88 Total: 3.31 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -1.05 Total: -54.79 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.08 Total: -9.19 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: -0.65 SS G_CDS: -2.19 Total: -2.84 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.51 -12.69 -43.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019940237.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.037 kcal (2) G-P(sol) polarization free energy of solvation -30.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds