Wall clock time and date at job start Tue Mar 31 2020 06:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86797 * 119.99919 * 2 1 4 4 H 1.48503 * 109.47374 * 240.00393 * 3 2 1 5 5 H 1.48502 * 109.46967 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47113 * 120.00193 * 3 2 1 7 7 C 1.37872 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99996 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00048 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47309 * 185.02204 * 9 7 2 11 11 C 1.46905 * 110.99887 * 295.08396 * 10 9 7 12 12 C 1.53242 * 109.33800 * 187.25343 * 11 10 9 13 13 N 1.47077 * 108.52209 * 306.16833 * 12 11 10 14 14 C 1.36777 * 120.87859 * 231.19030 * 13 12 11 15 15 N 1.31321 * 126.43899 * 0.02562 * 14 13 12 16 16 C 1.31359 * 120.48380 * 179.64842 * 15 14 13 17 17 O 1.21935 * 122.74828 * 180.36866 * 16 15 14 18 18 C 1.48011 * 114.50767 * 0.57691 * 16 15 14 19 19 C 1.33723 * 128.23676 * 179.76705 * 18 16 15 20 20 C 1.51271 * 120.85169 * 359.68101 * 19 18 16 21 21 C 1.53229 * 108.54128 * 231.32616 * 20 19 18 22 22 C 1.52958 * 109.40155 * 305.36982 * 21 20 19 23 23 C 1.52965 * 109.75706 * 63.63336 * 22 21 20 24 24 C 1.51272 * 120.85174 * 179.65776 * 19 18 16 25 25 S 1.77267 * 126.43476 * 179.97438 * 14 13 12 26 26 C 1.47074 * 118.23603 * 51.45877 * 13 12 11 27 27 C 1.46900 * 111.00044 * 59.38367 * 10 9 7 28 28 H 0.96995 * 120.00010 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47042 * 65.02357 * 9 7 2 30 30 H 1.08996 * 109.47321 * 305.02398 * 9 7 2 31 31 H 1.09001 * 109.49452 * 67.29087 * 11 10 9 32 32 H 1.09005 * 109.48935 * 307.21147 * 11 10 9 33 33 H 1.09005 * 109.62334 * 186.45949 * 12 11 10 34 34 H 1.09000 * 109.79019 * 65.97530 * 12 11 10 35 35 H 1.09004 * 109.62938 * 111.60442 * 20 19 18 36 36 H 1.09008 * 109.78395 * 351.13674 * 20 19 18 37 37 H 1.09000 * 109.48605 * 185.39217 * 21 20 19 38 38 H 1.09000 * 109.48189 * 65.34517 * 21 20 19 39 39 H 1.09003 * 109.41548 * 183.69679 * 22 21 20 40 40 H 1.08993 * 109.41907 * 303.56404 * 22 21 20 41 41 H 1.08998 * 109.48439 * 56.34459 * 23 22 21 42 42 H 1.09005 * 109.48332 * 176.38642 * 23 22 21 43 43 H 1.09004 * 109.62381 * 248.38898 * 24 19 18 44 44 H 1.08993 * 109.62263 * 8.77101 * 24 19 18 45 45 H 1.08996 * 109.63262 * 68.25250 * 26 13 12 46 46 H 1.09007 * 109.62782 * 188.83463 * 26 13 12 47 47 H 1.08999 * 109.49062 * 292.70465 * 27 10 9 48 48 H 1.08994 * 109.49673 * 52.78744 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2012 -3.6131 0.1201 11 6 3.0766 -3.6881 -1.0572 12 6 3.9249 -4.9619 -0.9784 13 7 4.6216 -4.9799 0.3168 14 6 5.9724 -5.1837 0.3845 15 7 6.7836 -5.3785 -0.6297 16 6 8.0697 -5.5561 -0.4297 17 8 8.8605 -5.7337 -1.3406 18 6 8.4796 -5.5279 0.9923 19 6 9.7057 -5.6816 1.5034 20 6 10.8962 -5.9270 0.6031 21 6 11.6502 -7.1580 1.1170 22 6 12.0056 -6.9574 2.5911 23 6 10.7256 -6.8574 3.4226 24 6 9.9377 -5.6140 2.9967 25 16 6.9571 -5.2332 1.8577 26 6 3.8263 -4.7790 1.5375 27 6 2.9827 -3.5066 1.3593 28 1 -0.4850 0.8400 -0.0004 29 1 0.6933 -2.5966 -0.9319 30 1 0.5590 -2.5192 0.8413 31 1 3.7306 -2.8164 -1.0804 32 1 2.4686 -3.7114 -1.9617 33 1 4.6555 -4.9658 -1.7873 34 1 3.2826 -5.8387 -1.0609 35 1 11.5555 -5.0591 0.6230 36 1 10.5567 -6.1052 -0.4173 37 1 12.5638 -7.2928 0.5379 38 1 11.0194 -8.0407 1.0120 39 1 12.5986 -7.8032 2.9392 40 1 12.5829 -6.0397 2.7031 41 1 10.1172 -7.7474 3.2618 42 1 10.9834 -6.7790 4.4788 43 1 10.5082 -4.7172 3.2383 44 1 8.9794 -5.5891 3.5152 45 1 3.1721 -5.6367 1.6937 46 1 4.4917 -4.6619 2.3929 47 1 3.6380 -2.6374 1.3025 48 1 2.3068 -3.3981 2.2075 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019940237.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:18 Heat of formation + Delta-G solvation = -5.002349 kcal Electronic energy + Delta-G solvation = -28352.590342 eV Core-core repulsion = 24533.134942 eV Total energy + Delta-G solvation = -3819.455400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 349.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.28674 -40.44812 -39.14630 -37.73522 -36.01506 -34.43778 -33.52789 -32.37345 -32.07442 -30.23327 -28.11144 -27.34968 -25.16565 -25.08432 -24.01371 -23.56168 -22.92075 -21.42611 -20.89018 -19.71645 -19.09128 -18.51258 -17.93449 -16.93128 -16.83143 -16.68809 -16.44782 -16.11453 -15.77343 -15.65515 -15.58052 -15.35575 -15.07260 -14.93294 -14.56997 -13.98168 -13.95471 -13.85760 -13.69670 -13.51362 -13.21709 -13.05432 -12.92066 -12.78070 -12.68061 -12.46782 -12.31809 -12.15047 -12.10687 -11.91575 -11.85640 -11.69880 -11.63710 -11.41569 -11.23118 -10.87707 -10.62935 -10.25181 -9.79732 -9.17603 -9.02414 -8.19852 -6.37872 -0.80710 -0.40089 0.58299 0.60306 1.34175 1.35945 1.36800 1.43003 2.33854 2.37799 2.92218 3.06492 3.19313 3.32454 3.59502 3.79103 3.88090 3.89313 3.91261 3.99570 4.11615 4.18056 4.22926 4.35201 4.36608 4.41156 4.43425 4.56870 4.66161 4.68747 4.79810 4.92787 4.96562 4.99598 5.05377 5.06070 5.11020 5.15402 5.22250 5.29086 5.31517 5.33741 5.42074 5.48480 5.53600 5.71847 5.95251 6.14486 6.35782 6.49277 6.81169 6.88970 7.33732 8.82665 Molecular weight = 349.16amu Principal moments of inertia in cm(-1) A = 0.016966 B = 0.002424 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.001411 B =11549.579810 C =11885.314354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.019 3.981 3 Si 0.947 3.053 4 H -0.277 1.277 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.558 4.558 8 H 0.050 0.950 9 C 0.201 3.799 10 N -0.533 5.533 11 C 0.052 3.948 12 C 0.127 3.873 13 N -0.520 5.520 14 C 0.472 3.528 15 N -0.695 5.695 16 C 0.545 3.455 17 O -0.523 6.523 18 C -0.303 4.303 19 C 0.070 3.930 20 C -0.114 4.114 21 C -0.110 4.110 22 C -0.121 4.121 23 C -0.112 4.112 24 C -0.099 4.099 25 S 0.009 5.991 26 C 0.120 3.880 27 C 0.049 3.951 28 H 0.266 0.734 29 H 0.009 0.991 30 H 0.020 0.980 31 H 0.017 0.983 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.054 0.946 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.095 0.905 43 H 0.113 0.887 44 H 0.077 0.923 45 H 0.120 0.880 46 H 0.107 0.893 47 H 0.025 0.975 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.845 -15.134 11.068 27.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.182 4.182 3 Si 0.773 3.227 4 H -0.203 1.203 5 H -0.206 1.206 6 H -0.195 1.195 7 C -0.597 4.597 8 H 0.068 0.932 9 C 0.075 3.925 10 N -0.256 5.256 11 C -0.078 4.078 12 C 0.003 3.997 13 N -0.229 5.229 14 C 0.097 3.903 15 N -0.451 5.451 16 C 0.328 3.672 17 O -0.403 6.403 18 C -0.421 4.421 19 C 0.062 3.938 20 C -0.154 4.154 21 C -0.148 4.148 22 C -0.159 4.159 23 C -0.149 4.149 24 C -0.137 4.137 25 S 0.249 5.751 26 C 0.000 4.000 27 C -0.080 4.080 28 H 0.075 0.925 29 H 0.027 0.973 30 H 0.038 0.962 31 H 0.036 0.964 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.126 0.874 35 H 0.121 0.879 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.113 0.887 43 H 0.131 0.869 44 H 0.096 0.904 45 H 0.138 0.862 46 H 0.125 0.875 47 H 0.043 0.957 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 19.162 -15.428 11.091 26.985 hybrid contribution 0.718 2.051 -1.331 2.548 sum 19.880 -13.377 9.760 25.873 Atomic orbital electron populations 1.70020 1.07244 1.27943 1.50704 1.25677 0.95518 1.02373 0.94593 0.85776 0.78561 0.79634 0.78728 1.20292 1.20597 1.19461 1.21900 0.93050 0.93158 1.51616 0.93165 1.19440 0.90948 0.85925 0.96206 1.62478 1.17044 1.44465 1.01644 1.22287 0.94868 0.95327 0.95283 1.22195 0.95236 0.99187 0.83073 1.46991 1.00585 1.64237 1.11074 1.24570 0.89257 0.83866 0.92649 1.66424 1.06246 1.39554 1.32836 1.19241 0.84273 0.75669 0.88022 1.90649 1.53791 1.47706 1.48155 1.25197 0.98257 1.20913 0.97713 1.22878 0.91024 0.81677 0.98240 1.21360 0.93898 1.00888 0.99216 1.21569 1.00063 0.95672 0.97505 1.21600 0.97340 1.03561 0.93352 1.21594 0.96196 0.95900 1.01241 1.21294 1.02608 1.01797 0.87966 1.84889 0.99434 1.84052 1.06714 1.22569 0.93832 0.99933 0.83714 1.22400 0.96160 0.95034 0.94407 0.92519 0.97253 0.96216 0.96416 0.89444 0.88724 0.87352 0.87880 0.90302 0.89801 0.92685 0.89906 0.90409 0.92082 0.88681 0.86892 0.90433 0.86161 0.87474 0.95689 0.88614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.35 13.29 21.45 0.28 -52.07 16 2 C 0.02 1.01 5.46 84.65 0.46 1.47 16 3 Si 0.95 42.87 29.54 68.60 2.03 44.89 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.56 -29.17 7.75 25.60 0.20 -28.98 16 8 H 0.05 2.64 5.88 -2.91 -0.02 2.62 16 9 C 0.20 9.62 5.11 85.56 0.44 10.06 16 10 N -0.53 -19.78 4.83 -898.86 -4.34 -24.12 16 11 C 0.05 1.81 5.24 86.38 0.45 2.26 16 12 C 0.13 3.58 6.67 86.35 0.58 4.16 16 13 N -0.52 -14.21 3.06 -700.08 -2.14 -16.35 16 14 C 0.47 14.00 8.08 179.46 1.45 15.45 16 15 N -0.70 -25.02 9.55 -315.60 -3.01 -28.03 16 16 C 0.55 19.64 8.02 87.36 0.70 20.34 16 17 O -0.52 -21.36 15.25 -5.10 -0.08 -21.44 16 18 C -0.30 -8.22 6.46 23.84 0.15 -8.06 16 19 C 0.07 1.44 5.44 -17.11 -0.09 1.35 16 20 C -0.11 -2.21 5.94 30.11 0.18 -2.03 16 21 C -0.11 -1.49 5.94 30.66 0.18 -1.30 16 22 C -0.12 -1.04 5.81 30.57 0.18 -0.86 16 23 C -0.11 -1.04 5.93 30.66 0.18 -0.85 16 24 C -0.10 -1.28 6.00 30.11 0.18 -1.10 16 25 S 0.01 0.22 20.40 -56.49 -1.15 -0.94 16 26 C 0.12 2.76 6.67 86.50 0.58 3.34 16 27 C 0.05 1.57 5.17 86.54 0.45 2.02 16 28 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 29 H 0.01 0.49 8.07 -2.39 -0.02 0.47 16 30 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.02 0.72 6.92 -2.39 -0.02 0.70 16 32 H 0.09 3.03 8.05 -2.38 -0.02 3.01 16 33 H 0.09 2.85 7.33 -2.38 -0.02 2.84 16 34 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 36 H 0.08 2.13 5.16 -2.38 -0.01 2.12 16 37 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 43 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.08 1.04 6.85 -2.39 -0.02 1.02 16 45 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.11 2.01 6.66 -2.38 -0.02 1.99 16 47 H 0.02 0.93 6.79 -2.39 -0.02 0.91 16 48 H 0.10 2.94 8.11 -2.39 -0.02 2.92 16 Total: -1.00 -69.63 384.60 -1.18 -70.81 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 0.97 Total: 9.99 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: 6.26 Total: 17.25 kcal Atomic # 7 Polarization: -111.36 SS G_CDS: -9.21 Total: -120.57 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.08 Total: -21.44 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: 0.22 SS G_CDS: -1.15 Total: -0.94 kcal Total: -69.63 -1.18 -70.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019940237.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.810 kcal (2) G-P(sol) polarization free energy of solvation -69.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds