Wall clock time and date at job start Tue Mar 31 2020 05:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31394 * 1 3 3 Si 1.86802 * 119.99890 * 2 1 4 4 H 1.48497 * 109.47025 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46764 * 299.99910 * 3 2 1 6 6 H 1.48503 * 109.47049 * 59.99576 * 3 2 1 7 7 C 1.38932 * 120.00265 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00109 * 159.34215 * 7 2 1 9 9 N 1.37069 * 120.00074 * 339.34388 * 7 2 1 10 10 C 1.39982 * 119.71938 * 317.81443 * 9 7 2 11 11 C 1.39055 * 129.83694 * 359.95149 * 10 9 7 12 12 C 1.33063 * 115.58656 * 180.02562 * 11 10 9 13 13 S 1.70432 * 111.30350 * 359.97438 * 12 11 10 14 14 C 1.38464 * 118.11842 * 179.97438 * 10 9 7 15 15 C 1.41897 * 119.25588 * 359.76506 * 14 10 9 16 16 O 1.21806 * 120.20088 * 180.24872 * 15 14 10 17 17 N 1.34643 * 119.59381 * 0.49605 * 15 14 10 18 18 C 1.40161 * 119.61381 * 179.74463 * 17 15 14 19 19 C 1.38842 * 120.05264 * 270.13139 * 18 17 15 20 20 C 1.38109 * 119.94276 * 179.97438 * 19 18 17 21 21 C 1.38387 * 120.05619 * 0.02562 * 20 19 18 22 22 Cl 1.73602 * 119.94717 * 180.02562 * 21 20 19 23 23 C 1.38389 * 120.10806 * 0.02562 * 21 20 19 24 24 C 1.38116 * 120.05432 * 359.97438 * 23 21 20 25 25 C 1.34235 * 119.71846 * 137.78433 * 9 7 2 26 26 O 1.21586 * 119.14935 * 0.02960 * 25 9 7 27 27 H 0.96994 * 119.99959 * 0.02562 * 1 2 3 28 28 H 1.08002 * 122.20994 * 0.02562 * 11 10 9 29 29 H 1.08001 * 124.34740 * 180.02562 * 12 11 10 30 30 H 1.07996 * 120.02743 * 359.95881 * 19 18 17 31 31 H 1.08002 * 119.97220 * 179.71694 * 20 19 18 32 32 H 1.08001 * 119.97296 * 179.97438 * 23 21 20 33 33 H 1.07992 * 120.02753 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 3.7079 1.3464 0.0006 5 1 1.8891 2.3964 -1.2125 6 1 1.8891 2.3965 1.2125 7 6 2.0087 -1.2032 0.0005 8 1 3.0365 -1.2333 -0.3294 9 7 1.3895 -2.3519 0.4198 10 6 0.5703 -2.3242 1.5546 11 6 0.2485 -1.2644 2.3953 12 6 -0.5670 -1.5588 3.4047 13 16 -1.0055 -3.2056 3.3864 14 6 -0.0393 -3.5035 1.9483 15 6 0.1816 -4.6841 1.1927 16 8 -0.3497 -5.7299 1.5209 17 7 0.9859 -4.6424 0.1138 18 6 1.2086 -5.8095 -0.6297 19 6 2.2626 -6.6519 -0.3023 20 6 2.4796 -7.8016 -1.0361 21 6 1.6480 -8.1141 -2.0971 22 17 1.9230 -9.5603 -3.0171 23 6 0.5974 -7.2754 -2.4260 24 6 0.3762 -6.1245 -1.6953 25 6 1.5733 -3.4937 -0.2617 26 8 2.2902 -3.4884 -1.2437 27 1 -0.4850 0.8400 -0.0004 28 1 0.6348 -0.2680 2.2392 29 1 -0.9079 -0.8455 4.1405 30 1 2.9123 -6.4082 0.5252 31 1 3.3021 -8.4549 -0.7847 32 1 -0.0500 -7.5212 -3.2548 33 1 -0.4440 -5.4706 -1.9520 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020746018.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:43 Heat of formation + Delta-G solvation = 23.626421 kcal Electronic energy + Delta-G solvation = -25472.601046 eV Core-core repulsion = 21617.189780 eV Total energy + Delta-G solvation = -3855.411266 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 348.012 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.73724 -39.20178 -38.09537 -37.44410 -36.39418 -34.63250 -34.13424 -32.61830 -31.09234 -30.09405 -28.56340 -25.65468 -24.69497 -22.86455 -22.76554 -22.42221 -20.40568 -19.46867 -18.57971 -17.49645 -16.65736 -16.40972 -16.25117 -15.93350 -15.33043 -14.74944 -14.44887 -14.34838 -14.05065 -13.60540 -13.52913 -13.50481 -13.37802 -13.17122 -12.68378 -12.29826 -12.01729 -11.80830 -11.66463 -11.44043 -11.37825 -11.14866 -10.86951 -10.65444 -10.42913 -10.02881 -9.82607 -9.54382 -9.37835 -9.00871 -8.97937 -8.60564 -8.25150 -7.26408 -6.78188 -4.65269 1.04163 1.07901 1.34333 1.94337 2.09563 2.51222 2.77493 2.92278 2.97161 3.02435 3.03688 3.14736 3.59761 3.78472 4.11055 4.25194 4.62163 4.85581 4.87131 5.25327 5.29191 5.39051 5.43981 5.57544 5.72550 5.86858 5.93787 6.20576 6.31754 6.40222 6.49247 6.54104 6.64125 6.85685 7.00160 7.07481 7.73815 7.93107 8.25305 8.45303 8.65290 9.17707 10.14155 Molecular weight = 348.01amu Principal moments of inertia in cm(-1) A = 0.014229 B = 0.003886 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.285777 B = 7202.836947 C = 8726.270360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.052 3.948 3 Si 0.930 3.070 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.342 4.342 8 H 0.113 0.887 9 N -0.339 5.339 10 C 0.252 3.748 11 C -0.103 4.103 12 C -0.217 4.217 13 S 0.211 5.789 14 C -0.397 4.397 15 C 0.591 3.409 16 O -0.540 6.540 17 N -0.517 5.517 18 C 0.164 3.836 19 C -0.084 4.084 20 C -0.103 4.103 21 C -0.031 4.031 22 Cl -0.075 7.075 23 C -0.102 4.102 24 C -0.083 4.083 25 C 0.662 3.338 26 O -0.545 6.545 27 H 0.281 0.719 28 H 0.148 0.852 29 H 0.167 0.833 30 H 0.134 0.866 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.093 -6.082 2.829 6.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.159 4.159 3 Si 0.754 3.246 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.469 4.469 8 H 0.131 0.869 9 N -0.045 5.045 10 C 0.132 3.868 11 C -0.138 4.138 12 C -0.355 4.355 13 S 0.473 5.527 14 C -0.519 4.519 15 C 0.390 3.610 16 O -0.419 6.419 17 N -0.260 5.260 18 C 0.075 3.925 19 C -0.104 4.104 20 C -0.122 4.122 21 C -0.057 4.057 22 Cl -0.046 7.046 23 C -0.121 4.121 24 C -0.102 4.102 25 C 0.368 3.632 26 O -0.420 6.420 27 H 0.092 0.908 28 H 0.165 0.835 29 H 0.184 0.816 30 H 0.152 0.848 31 H 0.156 0.844 32 H 0.156 0.844 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.765 -7.483 3.161 8.159 hybrid contribution 1.045 1.941 -1.183 2.502 sum 0.280 -5.542 1.978 5.891 Atomic orbital electron populations 1.70012 1.06378 1.29337 1.40967 1.25636 0.95406 1.00715 0.94142 0.85812 0.80419 0.79805 0.78605 1.18334 1.19929 1.19626 1.19702 0.97360 0.81696 1.48177 0.86945 1.40564 1.38266 1.07569 1.18079 1.18315 0.90618 0.91953 0.85872 1.19380 1.00804 1.00065 0.93532 1.24903 1.04558 1.02158 1.03852 1.82372 1.47428 1.00739 1.22122 1.22904 1.20971 0.96948 1.11124 1.15817 0.78143 0.88216 0.78871 1.90801 1.50079 1.32132 1.68906 1.43926 1.45639 1.08681 1.27730 1.17360 0.95824 0.86493 0.92835 1.21139 0.96472 0.93243 0.99533 1.20826 0.99586 0.97265 0.94511 1.20906 0.98593 0.90224 0.95980 1.98353 1.96043 1.36876 1.73335 1.20844 0.97182 0.93607 1.00482 1.21181 0.98943 0.96417 0.93662 1.16273 0.83396 0.80055 0.83451 1.90885 1.41119 1.83751 1.26231 0.90805 0.83469 0.81555 0.84802 0.84365 0.84352 0.84736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -19.99 11.22 55.49 0.62 -19.37 16 2 C 0.05 1.21 3.57 -17.48 -0.06 1.14 16 3 Si 0.93 17.66 29.60 -169.99 -5.03 12.63 16 4 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 5 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 6 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 7 C -0.34 -8.51 8.60 -14.95 -0.13 -8.63 16 8 H 0.11 2.83 7.82 -52.49 -0.41 2.42 16 9 N -0.34 -8.36 2.72 -64.22 -0.17 -8.54 16 10 C 0.25 5.67 5.92 -83.75 -0.50 5.17 16 11 C -0.10 -2.05 8.14 -41.08 -0.33 -2.38 16 12 C -0.22 -3.50 10.86 28.93 0.31 -3.19 16 13 S 0.21 3.57 23.08 -107.50 -2.48 1.09 16 14 C -0.40 -8.53 6.48 -38.10 -0.25 -8.78 16 15 C 0.59 13.30 7.42 -14.92 -0.11 13.19 16 16 O -0.54 -12.56 17.06 5.09 0.09 -12.47 16 17 N -0.52 -11.52 2.59 -67.48 -0.17 -11.69 16 18 C 0.16 3.24 3.69 -83.60 -0.31 2.93 16 19 C -0.08 -1.44 9.97 -39.41 -0.39 -1.83 16 20 C -0.10 -1.46 9.82 -39.57 -0.39 -1.85 16 21 C -0.03 -0.43 6.32 -39.47 -0.25 -0.68 16 22 Cl -0.07 -0.90 28.95 -51.86 -1.50 -2.40 16 23 C -0.10 -1.49 9.82 -39.57 -0.39 -1.88 16 24 C -0.08 -1.46 9.97 -39.40 -0.39 -1.85 16 25 C 0.66 16.32 8.03 -87.77 -0.70 15.61 16 26 O -0.55 -14.41 16.02 5.29 0.08 -14.32 16 27 H 0.28 6.20 8.31 -40.82 -0.34 5.86 16 28 H 0.15 2.96 6.10 -52.49 -0.32 2.64 16 29 H 0.17 2.04 8.06 -52.49 -0.42 1.62 16 30 H 0.13 2.13 8.06 -52.49 -0.42 1.71 16 31 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 32 H 0.14 1.64 8.06 -52.49 -0.42 1.21 16 33 H 0.13 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 323.69 15.07 4.88 4.88 Total: -1.00 -29.04 323.69 -9.56 -38.60 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -1.98 Total: 4.61 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: -3.89 Total: 6.98 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.27 Total: -39.60 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: 0.17 Total: -26.79 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.03 Total: 12.63 kcal Atomic # 16 Polarization: 3.57 SS G_CDS: -2.48 Total: 1.09 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.50 Total: -2.40 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.04 -9.56 -38.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020746018.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.228 kcal (2) G-P(sol) polarization free energy of solvation -29.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds