Wall clock time and date at job start Tue Mar 31 2020 06:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31577 * 1 3 3 Si 1.86799 * 120.00066 * 2 1 4 4 H 1.48503 * 109.46722 * 269.99560 * 3 2 1 5 5 H 1.48498 * 109.47296 * 29.99088 * 3 2 1 6 6 H 1.48498 * 109.47337 * 149.99572 * 3 2 1 7 7 C 1.38630 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00007 * 180.02562 * 7 2 1 9 9 O 1.34810 * 120.00114 * 0.02562 * 7 2 1 10 10 C 1.35773 * 117.00309 * 185.17138 * 9 7 2 11 11 C 1.38911 * 119.99804 * 173.47937 * 10 9 7 12 12 C 1.38002 * 120.00036 * 179.72866 * 11 10 9 13 13 C 1.38940 * 119.99700 * 0.54866 * 12 11 10 14 14 N 1.39903 * 120.00383 * 179.70485 * 13 12 11 15 15 C 1.34780 * 120.00148 * 28.39202 * 14 13 12 16 16 O 1.21706 * 119.99962 * 357.54384 * 15 14 13 17 17 C 1.46673 * 120.00314 * 177.54285 * 15 14 13 18 18 C 1.36726 * 126.85784 * 165.62725 * 17 15 14 19 19 N 1.33319 * 107.83900 * 180.02562 * 18 17 15 20 20 C 1.30871 * 109.74063 * 359.97438 * 19 18 17 21 21 N 1.34751 * 109.13972 * 359.72811 * 20 19 18 22 22 C 1.40110 * 126.50716 * 180.30679 * 21 20 19 23 23 C 1.38849 * 120.06844 * 128.75108 * 22 21 20 24 24 C 1.38117 * 119.93197 * 179.70098 * 23 22 21 25 25 C 1.38282 * 120.06973 * 0.57313 * 24 23 22 26 26 C 1.38284 * 120.13236 * 359.72595 * 25 24 23 27 27 C 1.38113 * 120.06629 * 359.97246 * 26 25 24 28 28 C 1.38941 * 119.99213 * 359.72210 * 13 12 11 29 29 C 1.37998 * 119.99817 * 0.02562 * 28 13 12 30 30 H 0.97008 * 119.99554 * 0.02562 * 1 2 3 31 31 H 1.07996 * 119.99946 * 359.97438 * 11 10 9 32 32 H 1.07998 * 119.99956 * 180.27752 * 12 11 10 33 33 H 0.97000 * 120.00285 * 208.39319 * 14 13 12 34 34 H 1.08003 * 126.08088 * 359.97438 * 18 17 15 35 35 H 1.08000 * 125.43337 * 179.97438 * 20 19 18 36 36 H 1.08003 * 120.03537 * 359.97438 * 23 22 21 37 37 H 1.08007 * 119.96757 * 180.29844 * 24 23 22 38 38 H 1.07996 * 119.93778 * 179.70229 * 25 24 23 39 39 H 1.07999 * 119.96767 * 180.02562 * 26 25 24 40 40 H 1.08009 * 120.03085 * 180.02562 * 27 26 25 41 41 H 1.08003 * 120.00270 * 179.97438 * 28 13 12 42 42 H 1.07998 * 119.99685 * 179.97438 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0463 -1.4001 5 1 1.4472 2.6527 0.6998 6 1 3.5473 1.4402 0.7001 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3348 -2.3681 0.0005 10 6 2.0699 -3.5043 0.1101 11 6 1.4347 -4.7314 0.2531 12 6 2.1817 -5.8869 0.3588 13 6 3.5693 -5.8217 0.3338 14 7 4.3268 -6.9925 0.4472 15 6 3.8213 -8.1663 0.0193 16 8 2.6891 -8.2157 -0.4244 17 6 4.6356 -9.3843 0.0885 18 6 4.1967 -10.6727 -0.0408 19 7 5.2515 -11.4782 0.0859 20 6 6.3304 -10.7653 0.2874 21 7 6.0020 -9.4584 0.2913 22 6 6.8778 -8.3794 0.4703 23 6 6.8784 -7.3265 -0.4348 24 6 7.7386 -6.2614 -0.2523 25 6 8.6068 -6.2485 0.8239 26 6 8.6129 -7.2986 1.7235 27 6 7.7508 -8.3636 1.5498 28 6 4.2046 -4.5937 0.1964 29 6 3.4573 -3.4389 0.0855 30 1 -0.4850 0.8401 -0.0004 31 1 0.3561 -4.7815 0.2775 32 1 1.6877 -6.8414 0.4654 33 1 5.2159 -6.9594 0.8337 34 1 3.1768 -10.9829 -0.2140 35 1 7.3258 -11.1611 0.4245 36 1 6.2039 -7.3382 -1.2783 37 1 7.7362 -5.4397 -0.9534 38 1 9.2818 -5.4168 0.9618 39 1 9.2918 -7.2856 2.5633 40 1 7.7557 -9.1833 2.2531 41 1 5.2832 -4.5428 0.1773 42 1 3.9511 -2.4844 -0.0209 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021783528.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:44 Heat of formation + Delta-G solvation = 77.978054 kcal Electronic energy + Delta-G solvation = -29290.958291 eV Core-core repulsion = 25203.824145 eV Total energy + Delta-G solvation = -4087.134146 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 349.121 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -42.87118 -40.05515 -39.61279 -38.60800 -36.49244 -34.85691 -33.85694 -32.23724 -31.66769 -30.52100 -30.25398 -29.75794 -27.86117 -25.44013 -24.22362 -23.51741 -23.20567 -22.28553 -21.47684 -21.04420 -20.20093 -19.00820 -18.02792 -17.37474 -16.99452 -16.66177 -16.35110 -16.23141 -15.34403 -15.16013 -14.76344 -14.60504 -14.42761 -14.27403 -14.24531 -14.06014 -13.81492 -13.58875 -13.48936 -13.23728 -12.84121 -12.52825 -12.22162 -11.91973 -11.83546 -11.65936 -11.60585 -11.08191 -10.90560 -10.76900 -10.54033 -10.48431 -9.92424 -9.71381 -9.55815 -9.30540 -9.23053 -8.92235 -8.74186 -8.24983 -6.95248 -6.47095 -4.05284 0.31079 0.70193 1.13348 2.09329 2.12043 2.19948 2.61100 3.04056 3.09226 3.10542 3.15668 3.15965 3.25712 3.93953 4.18753 4.23413 4.25800 4.30593 4.54599 4.56513 4.76076 4.77440 4.90211 5.07154 5.11112 5.20740 5.30403 5.36665 5.42449 5.48499 5.74322 5.74751 5.78999 5.89698 6.05856 6.11278 6.16157 6.21131 6.26643 6.73899 6.78540 6.80582 6.91857 7.10581 7.17300 7.36453 7.49549 7.64079 7.73681 7.96938 8.18370 8.97950 9.68460 10.70767 Molecular weight = 349.12amu Principal moments of inertia in cm(-1) A = 0.014895 B = 0.002705 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.339675 B =10350.499902 C =12007.002736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.392 4.392 8 H 0.092 0.908 9 O -0.176 6.176 10 C 0.147 3.853 11 C -0.176 4.176 12 C -0.074 4.074 13 C 0.033 3.967 14 N -0.655 5.655 15 C 0.583 3.417 16 O -0.509 6.509 17 C -0.081 4.081 18 C 0.070 3.930 19 N -0.492 5.492 20 C 0.218 3.782 21 N -0.400 5.400 22 C 0.093 3.907 23 C -0.110 4.110 24 C -0.099 4.099 25 C -0.103 4.103 26 C -0.103 4.103 27 C -0.109 4.109 28 C -0.091 4.091 29 C -0.218 4.218 30 H 0.270 0.730 31 H 0.122 0.878 32 H 0.139 0.861 33 H 0.399 0.601 34 H 0.189 0.811 35 H 0.213 0.787 36 H 0.135 0.865 37 H 0.140 0.860 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.107 0.893 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.274 -15.414 3.034 25.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.079 6.079 10 C 0.093 3.907 11 C -0.196 4.196 12 C -0.094 4.094 13 C -0.059 4.059 14 N -0.301 5.301 15 C 0.370 3.630 16 O -0.385 6.385 17 C -0.194 4.194 18 C -0.082 4.082 19 N -0.209 5.209 20 C -0.063 4.063 21 N -0.081 5.081 22 C 0.002 3.998 23 C -0.130 4.130 24 C -0.118 4.118 25 C -0.122 4.122 26 C -0.122 4.122 27 C -0.128 4.128 28 C -0.111 4.111 29 C -0.238 4.238 30 H 0.080 0.920 31 H 0.140 0.860 32 H 0.156 0.844 33 H 0.237 0.763 34 H 0.206 0.794 35 H 0.230 0.770 36 H 0.153 0.847 37 H 0.157 0.843 38 H 0.153 0.847 39 H 0.155 0.845 40 H 0.153 0.847 41 H 0.125 0.875 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 19.057 -15.992 2.660 25.019 hybrid contribution 1.133 1.686 0.198 2.041 sum 20.190 -14.306 2.858 24.909 Atomic orbital electron populations 1.70052 1.05954 1.27695 1.45868 1.25291 0.95842 0.98832 0.96575 0.85718 0.78886 0.80143 0.78700 1.19885 1.20240 1.19230 1.21303 0.91739 0.80871 1.52915 0.89107 1.83992 1.34253 1.11385 1.78255 1.19431 0.90212 0.88169 0.92886 1.20201 0.99850 0.89808 1.09773 1.20979 0.91727 0.98478 0.98184 1.17295 0.90897 0.84507 1.13197 1.43550 1.19648 1.06372 1.60545 1.16822 0.86164 0.81503 0.78554 1.90829 1.17451 1.84694 1.45522 1.21415 0.82450 0.97640 1.17904 1.22687 0.99121 0.86745 0.99634 1.70280 0.97982 1.33025 1.19618 1.25293 1.00619 0.78133 1.02264 1.42990 1.06085 1.06707 1.52305 1.17800 0.95074 0.89294 0.97635 1.21312 0.99643 0.93512 0.98505 1.21221 0.94495 0.97810 0.98267 1.21445 0.98195 0.98509 0.94007 1.21141 0.98371 0.93074 0.99571 1.21134 0.95867 1.00036 0.95772 1.20385 0.98202 0.91046 1.01491 1.20943 0.93699 0.98295 1.10835 0.91978 0.85994 0.84367 0.76252 0.79448 0.77017 0.84703 0.84265 0.84720 0.84536 0.84722 0.87452 0.85079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.10 13.67 55.48 0.76 -24.34 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 3 Si 0.94 20.12 29.55 -169.99 -5.02 15.09 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.39 -10.76 9.48 30.88 0.29 -10.47 16 8 H 0.09 2.27 5.20 -52.49 -0.27 2.00 16 9 O -0.18 -4.98 9.75 0.04 0.00 -4.97 16 10 C 0.15 3.54 6.65 -39.08 -0.26 3.28 16 11 C -0.18 -3.88 9.98 -39.42 -0.39 -4.28 16 12 C -0.07 -1.47 8.73 -39.41 -0.34 -1.82 16 13 C 0.03 0.60 6.41 -83.65 -0.54 0.06 16 14 N -0.65 -9.69 4.27 -11.00 -0.05 -9.74 16 15 C 0.58 9.05 7.29 -12.85 -0.09 8.96 16 16 O -0.51 -9.44 14.02 5.18 0.07 -9.37 16 17 C -0.08 -1.05 6.74 -82.07 -0.55 -1.60 16 18 C 0.07 0.88 11.69 -17.45 -0.20 0.67 16 19 N -0.49 -5.77 11.20 -14.35 -0.16 -5.93 16 20 C 0.22 1.98 12.24 -90.33 -1.11 0.87 16 21 N -0.40 -4.05 2.88 -58.64 -0.17 -4.22 16 22 C 0.09 0.80 4.60 -83.62 -0.38 0.41 16 23 C -0.11 -0.98 6.91 -39.40 -0.27 -1.25 16 24 C -0.10 -0.71 10.04 -39.61 -0.40 -1.10 16 25 C -0.10 -0.59 10.04 -39.55 -0.40 -0.99 16 26 C -0.10 -0.54 10.04 -39.61 -0.40 -0.94 16 27 C -0.11 -0.69 9.70 -39.40 -0.38 -1.07 16 28 C -0.09 -1.60 9.94 -39.41 -0.39 -1.99 16 29 C -0.22 -4.57 9.16 -39.42 -0.36 -4.93 16 30 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.12 2.61 8.06 -52.49 -0.42 2.18 16 32 H 0.14 2.72 5.77 -52.49 -0.30 2.42 16 33 H 0.40 5.01 4.95 -40.82 -0.20 4.80 16 34 H 0.19 2.11 8.06 -52.48 -0.42 1.69 16 35 H 0.21 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.14 1.40 7.73 -52.48 -0.41 1.00 16 37 H 0.14 0.84 8.06 -52.48 -0.42 0.41 16 38 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 39 H 0.14 0.41 8.06 -52.49 -0.42 -0.01 16 40 H 0.13 0.65 8.06 -52.48 -0.42 0.22 16 41 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 42 H 0.13 2.70 5.64 -52.49 -0.30 2.40 16 LS Contribution 363.86 15.07 5.48 5.48 Total: -1.00 -33.87 363.86 -9.36 -43.22 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -4.00 Total: 9.99 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -6.28 Total: -15.22 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 0.38 Total: -44.22 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: 0.07 Total: -14.35 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.87 -9.36 -43.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021783528.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.203 kcal (2) G-P(sol) polarization free energy of solvation -33.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds