Wall clock time and date at job start Tue Mar 31 2020 06:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31577 * 1 3 3 Si 1.86799 * 120.00066 * 2 1 4 4 H 1.48503 * 109.46722 * 269.99560 * 3 2 1 5 5 H 1.48498 * 109.47296 * 29.99088 * 3 2 1 6 6 H 1.48498 * 109.47337 * 149.99572 * 3 2 1 7 7 C 1.38630 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00007 * 180.02562 * 7 2 1 9 9 O 1.34810 * 120.00114 * 0.02562 * 7 2 1 10 10 C 1.35773 * 117.00309 * 185.17138 * 9 7 2 11 11 C 1.38911 * 119.99804 * 173.47937 * 10 9 7 12 12 C 1.38002 * 120.00036 * 179.72866 * 11 10 9 13 13 C 1.38940 * 119.99700 * 0.54866 * 12 11 10 14 14 N 1.39903 * 120.00383 * 179.70485 * 13 12 11 15 15 C 1.34780 * 120.00148 * 28.39202 * 14 13 12 16 16 O 1.21706 * 119.99962 * 357.54384 * 15 14 13 17 17 C 1.46673 * 120.00314 * 177.54285 * 15 14 13 18 18 C 1.36726 * 126.85784 * 165.62725 * 17 15 14 19 19 N 1.33319 * 107.83900 * 180.02562 * 18 17 15 20 20 C 1.30871 * 109.74063 * 359.97438 * 19 18 17 21 21 N 1.34751 * 109.13972 * 359.72811 * 20 19 18 22 22 C 1.40110 * 126.50716 * 180.30679 * 21 20 19 23 23 C 1.38849 * 120.06844 * 128.75108 * 22 21 20 24 24 C 1.38117 * 119.93197 * 179.70098 * 23 22 21 25 25 C 1.38282 * 120.06973 * 0.57313 * 24 23 22 26 26 C 1.38284 * 120.13236 * 359.72595 * 25 24 23 27 27 C 1.38113 * 120.06629 * 359.97246 * 26 25 24 28 28 C 1.38941 * 119.99213 * 359.72210 * 13 12 11 29 29 C 1.37998 * 119.99817 * 0.02562 * 28 13 12 30 30 H 0.97008 * 119.99554 * 0.02562 * 1 2 3 31 31 H 1.07996 * 119.99946 * 359.97438 * 11 10 9 32 32 H 1.07998 * 119.99956 * 180.27752 * 12 11 10 33 33 H 0.97000 * 120.00285 * 208.39319 * 14 13 12 34 34 H 1.08003 * 126.08088 * 359.97438 * 18 17 15 35 35 H 1.08000 * 125.43337 * 179.97438 * 20 19 18 36 36 H 1.08003 * 120.03537 * 359.97438 * 23 22 21 37 37 H 1.08007 * 119.96757 * 180.29844 * 24 23 22 38 38 H 1.07996 * 119.93778 * 179.70229 * 25 24 23 39 39 H 1.07999 * 119.96767 * 180.02562 * 26 25 24 40 40 H 1.08009 * 120.03085 * 180.02562 * 27 26 25 41 41 H 1.08003 * 120.00270 * 179.97438 * 28 13 12 42 42 H 1.07998 * 119.99685 * 179.97438 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0463 -1.4001 5 1 1.4472 2.6527 0.6998 6 1 3.5473 1.4402 0.7001 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3348 -2.3681 0.0005 10 6 2.0699 -3.5043 0.1101 11 6 1.4347 -4.7314 0.2531 12 6 2.1817 -5.8869 0.3588 13 6 3.5693 -5.8217 0.3338 14 7 4.3268 -6.9925 0.4472 15 6 3.8213 -8.1663 0.0193 16 8 2.6891 -8.2157 -0.4244 17 6 4.6356 -9.3843 0.0885 18 6 4.1967 -10.6727 -0.0408 19 7 5.2515 -11.4782 0.0859 20 6 6.3304 -10.7653 0.2874 21 7 6.0020 -9.4584 0.2913 22 6 6.8778 -8.3794 0.4703 23 6 6.8784 -7.3265 -0.4348 24 6 7.7386 -6.2614 -0.2523 25 6 8.6068 -6.2485 0.8239 26 6 8.6129 -7.2986 1.7235 27 6 7.7508 -8.3636 1.5498 28 6 4.2046 -4.5937 0.1964 29 6 3.4573 -3.4389 0.0855 30 1 -0.4850 0.8401 -0.0004 31 1 0.3561 -4.7815 0.2775 32 1 1.6877 -6.8414 0.4654 33 1 5.2159 -6.9594 0.8337 34 1 3.1768 -10.9829 -0.2140 35 1 7.3258 -11.1611 0.4245 36 1 6.2039 -7.3382 -1.2783 37 1 7.7362 -5.4397 -0.9534 38 1 9.2818 -5.4168 0.9618 39 1 9.2918 -7.2856 2.5633 40 1 7.7557 -9.1833 2.2531 41 1 5.2832 -4.5428 0.1773 42 1 3.9511 -2.4844 -0.0209 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021783528.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:43 Heat of formation + Delta-G solvation = 58.907010 kcal Electronic energy + Delta-G solvation = -29291.785273 eV Core-core repulsion = 25203.824145 eV Total energy + Delta-G solvation = -4087.961128 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 349.121 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.70992 -41.45606 -40.30508 -40.18515 -38.15258 -35.86088 -35.03439 -34.16130 -32.24686 -31.90341 -31.44492 -30.43790 -29.37376 -27.36363 -25.14577 -24.31904 -24.07807 -23.76876 -22.59577 -22.14037 -21.28685 -20.07174 -19.66057 -19.00049 -18.18709 -17.64054 -17.31693 -17.12832 -16.38442 -16.29507 -16.11745 -15.93104 -15.73411 -15.51269 -15.32793 -14.99521 -14.96176 -14.67375 -14.56834 -14.50563 -14.27469 -13.79877 -13.61902 -13.31867 -13.30054 -12.72182 -12.66883 -12.54608 -12.32660 -12.11420 -11.68751 -11.40155 -11.35903 -11.25795 -10.96292 -10.62966 -10.08970 -9.98359 -9.89498 -9.68838 -8.64640 -8.45104 -6.12856 -0.34399 0.20339 0.22067 0.48690 0.65264 1.34602 1.37510 1.46429 1.55498 1.69186 1.89270 2.10371 2.19433 2.57651 2.80752 3.14053 3.31176 3.50441 3.57821 3.73509 3.77666 3.91847 4.03718 4.11369 4.15425 4.21351 4.32921 4.37919 4.45772 4.54612 4.60961 4.62198 4.71506 4.92385 5.03185 5.16714 5.20888 5.22889 5.28371 5.34154 5.39607 5.44993 5.48319 5.63285 5.71904 6.01909 6.07600 6.09582 6.26963 6.69968 6.91079 6.98972 7.78928 8.78052 Molecular weight = 349.12amu Principal moments of inertia in cm(-1) A = 0.014895 B = 0.002705 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.339675 B =10350.499902 C =12007.002736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.025 4.025 3 Si 1.020 2.980 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.247 1.247 7 C -0.412 4.412 8 H 0.109 0.891 9 O -0.230 6.230 10 C 0.111 3.889 11 C -0.187 4.187 12 C -0.081 4.081 13 C 0.057 3.943 14 N -0.644 5.644 15 C 0.586 3.414 16 O -0.546 6.546 17 C -0.106 4.106 18 C 0.069 3.931 19 N -0.518 5.518 20 C 0.240 3.760 21 N -0.394 5.394 22 C 0.070 3.930 23 C -0.129 4.129 24 C -0.107 4.107 25 C -0.098 4.098 26 C -0.097 4.097 27 C -0.103 4.103 28 C -0.077 4.077 29 C -0.214 4.214 30 H 0.272 0.728 31 H 0.113 0.887 32 H 0.140 0.860 33 H 0.414 0.586 34 H 0.189 0.811 35 H 0.258 0.742 36 H 0.111 0.889 37 H 0.147 0.853 38 H 0.159 0.841 39 H 0.166 0.834 40 H 0.154 0.846 41 H 0.155 0.845 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.513 -16.202 4.255 30.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.222 4.222 3 Si 0.839 3.161 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.170 1.170 7 C -0.488 4.488 8 H 0.126 0.874 9 O -0.136 6.136 10 C 0.060 3.940 11 C -0.207 4.207 12 C -0.101 4.101 13 C -0.036 4.036 14 N -0.292 5.292 15 C 0.375 3.625 16 O -0.424 6.424 17 C -0.219 4.219 18 C -0.084 4.084 19 N -0.235 5.235 20 C -0.040 4.040 21 N -0.074 5.074 22 C -0.020 4.020 23 C -0.149 4.149 24 C -0.126 4.126 25 C -0.116 4.116 26 C -0.115 4.115 27 C -0.122 4.122 28 C -0.097 4.097 29 C -0.234 4.234 30 H 0.081 0.919 31 H 0.131 0.869 32 H 0.158 0.842 33 H 0.256 0.744 34 H 0.206 0.794 35 H 0.273 0.727 36 H 0.129 0.871 37 H 0.165 0.835 38 H 0.176 0.824 39 H 0.184 0.816 40 H 0.171 0.829 41 H 0.172 0.828 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 24.375 -16.833 3.896 29.877 hybrid contribution -0.255 1.527 -0.157 1.556 sum 24.120 -15.306 3.740 28.810 Atomic orbital electron populations 1.70215 1.08218 1.28804 1.48859 1.26650 0.96822 1.02921 0.95849 0.84561 0.77961 0.74326 0.79207 1.18915 1.19987 1.17010 1.21891 0.92747 0.81200 1.52998 0.87402 1.83966 1.35988 1.12559 1.81109 1.19855 0.91787 0.87652 0.94713 1.20295 0.99902 0.90217 1.10312 1.21063 0.92908 0.97663 0.98482 1.17441 0.90451 0.86015 1.09715 1.43473 1.19939 1.05206 1.60561 1.17156 0.85851 0.82158 0.77323 1.90809 1.19264 1.85329 1.47036 1.20944 0.83944 0.96285 1.20766 1.22835 0.99721 0.86916 0.98901 1.70316 0.98498 1.33524 1.21162 1.26182 1.01525 0.77480 0.98843 1.43023 1.05054 1.07629 1.51681 1.18010 0.95915 0.89089 0.98953 1.21230 1.00493 0.94748 0.98410 1.21393 0.94505 0.97535 0.99120 1.21788 0.97542 0.99240 0.93042 1.21533 0.97914 0.92096 0.99967 1.21390 0.94927 1.00922 0.94975 1.20708 1.00285 0.89378 0.99323 1.21102 0.92494 0.99800 1.09981 0.91901 0.86857 0.84234 0.74413 0.79438 0.72658 0.87070 0.83505 0.82358 0.81637 0.82868 0.82763 0.84522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.62 13.67 21.61 0.30 -56.33 16 2 C -0.03 -1.41 5.49 84.82 0.47 -0.94 16 3 Si 1.02 41.63 29.55 68.60 2.03 43.66 16 4 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.25 -9.08 7.11 99.48 0.71 -8.38 16 7 C -0.41 -23.44 9.48 67.91 0.64 -22.80 16 8 H 0.11 5.45 5.20 -2.91 -0.02 5.43 16 9 O -0.23 -13.80 9.75 -22.79 -0.22 -14.02 16 10 C 0.11 5.55 6.65 22.59 0.15 5.70 16 11 C -0.19 -8.67 9.98 22.38 0.22 -8.45 16 12 C -0.08 -3.30 8.73 22.38 0.20 -3.10 16 13 C 0.06 1.99 6.41 38.19 0.24 2.23 16 14 N -0.64 -18.08 4.27 -306.94 -1.31 -19.39 16 15 C 0.59 17.98 7.29 86.44 0.63 18.61 16 16 O -0.55 -20.64 14.02 -4.37 -0.06 -20.71 16 17 C -0.11 -2.65 6.74 39.97 0.27 -2.38 16 18 C 0.07 1.69 11.69 84.11 0.98 2.68 16 19 N -0.52 -11.19 11.20 -199.31 -2.23 -13.43 16 20 C 0.24 3.62 12.24 180.25 2.21 5.83 16 21 N -0.39 -7.04 2.88 -339.43 -0.98 -8.01 16 22 C 0.07 0.99 4.60 38.11 0.18 1.17 16 23 C -0.13 -1.99 6.91 22.39 0.15 -1.83 16 24 C -0.11 -1.15 10.04 22.25 0.22 -0.93 16 25 C -0.10 -0.65 10.04 22.29 0.22 -0.43 16 26 C -0.10 -0.52 10.04 22.25 0.22 -0.30 16 27 C -0.10 -0.85 9.70 22.39 0.22 -0.63 16 28 C -0.08 -2.54 9.94 22.38 0.22 -2.31 16 29 C -0.21 -8.88 9.16 22.37 0.20 -8.67 16 30 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 31 H 0.11 5.27 8.06 -2.91 -0.02 5.25 16 32 H 0.14 5.66 5.77 -2.91 -0.02 5.64 16 33 H 0.41 9.33 4.95 -92.71 -0.46 8.87 16 34 H 0.19 4.32 8.06 -2.91 -0.02 4.30 16 35 H 0.26 1.23 8.06 -2.91 -0.02 1.21 16 36 H 0.11 2.21 7.73 -2.91 -0.02 2.19 16 37 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 38 H 0.16 0.32 8.06 -2.91 -0.02 0.30 16 39 H 0.17 -0.03 8.06 -2.91 -0.02 -0.05 16 40 H 0.15 0.68 8.06 -2.91 -0.02 0.66 16 41 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 42 H 0.14 5.48 5.64 -2.91 -0.02 5.46 16 Total: -1.00 -80.08 363.86 5.81 -74.27 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: 0.63 Total: 30.51 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: 7.66 Total: -16.56 kcal Atomic # 7 Polarization: -92.93 SS G_CDS: -4.22 Total: -97.16 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -0.28 Total: -34.73 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -80.08 5.81 -74.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021783528.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.178 kcal (2) G-P(sol) polarization free energy of solvation -80.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds