Wall clock time and date at job start Tue Mar 31 2020 05:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30841 * 125.81262 * 2 1 4 4 N 1.40088 * 108.27509 * 180.15794 * 3 2 1 5 5 C 1.39799 * 126.10398 * 179.81484 * 4 3 2 6 6 C 1.39073 * 119.91978 * 324.69930 * 5 4 3 7 7 C 1.37699 * 120.08491 * 179.97438 * 6 5 4 8 8 C 1.39760 * 119.91530 * 0.25381 * 7 6 5 9 9 C 1.47536 * 120.08169 * 179.74617 * 8 7 6 10 10 O 1.21489 * 120.00152 * 359.97438 * 9 8 7 11 11 O 1.34742 * 120.00198 * 179.97438 * 9 8 7 12 12 C 1.45193 * 117.00244 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47202 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.46856 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00292 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99771 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00023 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 119.99941 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.46946 * 89.99930 * 18 16 14 20 20 H 1.48496 * 109.47002 * 209.99836 * 18 16 14 21 21 H 1.48496 * 109.47237 * 330.00077 * 18 16 14 22 22 C 1.39773 * 119.83659 * 359.49200 * 8 7 6 23 23 C 1.37700 * 119.91193 * 0.52850 * 22 8 7 24 24 C 1.35946 * 107.79766 * 359.55670 * 4 3 2 25 25 C 1.50703 * 126.20560 * 180.22247 * 24 4 3 26 26 C 1.35344 * 107.59271 * 0.26370 * 24 4 3 27 27 Cl 1.73607 * 126.01934 * 179.97438 * 26 24 4 28 28 H 1.09004 * 109.47119 * 270.32924 * 1 2 3 29 29 H 1.09000 * 109.46746 * 30.32590 * 1 2 3 30 30 H 1.08994 * 109.47004 * 150.33102 * 1 2 3 31 31 H 1.07999 * 119.95570 * 359.96763 * 6 5 4 32 32 H 1.08002 * 120.03815 * 179.97438 * 7 6 5 33 33 H 1.08998 * 109.47621 * 300.00897 * 12 11 9 34 34 H 1.09005 * 109.46757 * 60.00444 * 12 11 9 35 35 H 1.09001 * 109.46945 * 300.00116 * 13 12 11 36 36 H 1.08991 * 109.47075 * 60.00488 * 13 12 11 37 37 H 0.96995 * 120.00285 * 179.97438 * 17 16 14 38 38 H 1.07999 * 120.04330 * 180.23358 * 22 8 7 39 39 H 1.08006 * 119.95377 * 179.72753 * 23 22 8 40 40 H 1.09002 * 109.46571 * 89.99922 * 25 24 4 41 41 H 1.08991 * 109.47009 * 210.00209 * 25 24 4 42 42 H 1.09001 * 109.46990 * 330.00396 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2726 1.0610 0.0000 4 7 3.6084 0.6389 -0.0037 5 6 4.7342 1.4677 -0.0085 6 6 4.7074 2.6701 -0.7067 7 6 5.8142 3.4893 -0.7133 8 6 6.9673 3.1085 -0.0216 9 6 8.1572 3.9808 -0.0308 10 8 8.1356 5.0313 -0.6407 11 8 9.2679 3.6123 0.6371 12 6 10.4005 4.5192 0.5838 13 6 11.5597 3.9356 1.3940 14 6 12.7351 4.8772 1.3391 15 1 12.6624 5.7998 0.7824 16 6 13.9029 4.5614 2.0006 17 7 14.9285 5.3833 1.9532 18 14 14.0285 2.9660 2.9641 19 1 14.5330 1.8890 2.0748 20 1 14.9649 3.1474 4.1022 21 1 12.6873 2.5931 3.4812 22 6 6.9887 1.9018 0.6835 23 6 5.8782 1.0877 0.6851 24 6 3.6146 -0.7205 0.0041 25 6 4.8346 -1.6051 0.0084 26 6 2.3263 -1.1355 0.0065 27 17 1.7851 -2.7850 0.0153 28 1 -0.3633 0.0059 1.0277 29 1 -0.3633 0.8871 -0.5189 30 1 -0.3633 -0.8929 -0.5087 31 1 3.8174 2.9617 -1.2445 32 1 5.7927 4.4228 -1.2562 33 1 10.7120 4.6511 -0.4524 34 1 10.1135 5.4839 1.0024 35 1 11.2485 3.8036 2.4303 36 1 11.8466 2.9712 0.9751 37 1 15.7499 5.1613 2.4187 38 1 7.8767 1.6061 1.2223 39 1 5.8955 0.1530 1.2260 40 1 5.1294 -1.8124 1.0371 41 1 4.6060 -2.5418 -0.4999 42 1 5.6509 -1.1008 -0.5089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021838180.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:52 Heat of formation + Delta-G solvation = 2.805756 kcal Electronic energy + Delta-G solvation = -26266.077823 eV Core-core repulsion = 22238.677023 eV Total energy + Delta-G solvation = -4027.400800 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.103 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.23440 -40.41379 -39.00318 -36.91750 -36.29738 -34.73509 -33.38487 -32.86760 -31.46987 -31.18098 -30.57552 -28.26737 -27.63957 -25.54544 -23.92893 -23.30498 -21.40637 -20.74291 -20.67641 -20.29923 -18.29233 -17.95030 -17.02852 -16.54563 -16.17845 -16.09840 -15.62963 -15.11853 -14.82111 -14.53036 -14.28526 -14.24206 -14.02375 -13.79958 -13.74220 -13.47319 -13.28819 -12.99835 -12.79842 -12.76292 -12.53945 -12.39850 -12.29938 -11.82047 -11.60455 -11.55909 -11.32970 -10.97176 -10.76850 -10.71774 -10.29471 -10.10166 -9.99068 -9.77701 -9.54195 -9.39973 -9.32333 -8.66628 -8.59457 -6.16835 -4.18444 0.01799 0.86463 1.24534 1.35532 1.94795 2.18598 2.48880 2.90161 3.24002 3.31777 3.34909 3.40058 3.87506 3.96831 4.24173 4.34335 4.36207 4.43716 4.65761 4.73077 4.80331 4.91244 4.96706 5.02475 5.10171 5.12698 5.16499 5.27820 5.39084 5.40154 5.52637 5.65577 5.71753 5.87328 5.90457 5.90581 5.97780 6.12533 6.38227 6.55786 6.65508 6.99870 7.10058 7.15549 7.57332 7.96740 8.35197 8.84731 9.42279 10.95667 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.019517 B = 0.001868 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.310097 B =14981.969979 C =16192.340509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.101 3.899 3 N -0.272 5.272 4 N -0.321 5.321 5 C 0.178 3.822 6 C -0.120 4.120 7 C -0.036 4.036 8 C -0.116 4.116 9 C 0.501 3.499 10 O -0.506 6.506 11 O -0.356 6.356 12 C 0.083 3.917 13 C -0.009 4.009 14 C -0.529 4.529 15 H 0.076 0.924 16 C 0.072 3.928 17 N -0.896 5.896 18 Si 0.881 3.119 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.263 1.263 22 C -0.038 4.038 23 C -0.144 4.144 24 C 0.111 3.889 25 C -0.104 4.104 26 C -0.181 4.181 27 Cl -0.033 7.033 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.143 0.857 32 H 0.150 0.850 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.028 0.972 36 H 0.024 0.976 37 H 0.266 0.734 38 H 0.155 0.845 39 H 0.141 0.859 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.265 -17.044 -4.178 34.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.068 4.068 3 N -0.092 5.092 4 N -0.097 5.097 5 C 0.086 3.914 6 C -0.140 4.140 7 C -0.055 4.055 8 C -0.117 4.117 9 C 0.346 3.654 10 O -0.396 6.396 11 O -0.272 6.272 12 C 0.011 3.989 13 C -0.046 4.046 14 C -0.567 4.567 15 H 0.094 0.906 16 C -0.130 4.130 17 N -0.534 5.534 18 Si 0.708 3.292 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.188 1.188 22 C -0.057 4.057 23 C -0.164 4.164 24 C -0.014 4.014 25 C -0.162 4.162 26 C -0.219 4.219 27 Cl -0.005 7.005 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.160 0.840 32 H 0.168 0.832 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.042 0.958 37 H 0.076 0.924 38 H 0.172 0.828 39 H 0.159 0.841 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -28.972 -15.512 -4.284 33.142 hybrid contribution 0.212 -1.580 0.487 1.667 sum -28.760 -17.092 -3.798 33.670 Atomic orbital electron populations 1.20297 0.85379 1.04083 1.03801 1.22460 0.97655 0.88714 0.97937 1.77610 0.85058 1.21405 1.25097 1.45510 1.04465 1.03124 1.56574 1.17633 0.84105 0.91541 0.98071 1.20887 0.99691 0.93348 1.00068 1.21207 0.89996 0.99213 0.95096 1.19420 0.93233 0.96067 1.03022 1.20911 0.83547 0.84396 0.76588 1.90832 1.83546 1.24037 1.41216 1.86520 1.22794 1.51621 1.66259 1.23457 0.82021 0.91489 1.01972 1.19632 0.91803 0.97579 0.95628 1.20831 0.95626 1.06660 1.33562 0.90611 1.24942 0.95330 0.96943 0.95797 1.69889 1.03724 1.36684 1.43056 0.86749 0.78504 0.83880 0.80052 1.20045 1.21153 1.18770 1.21435 0.98085 0.91430 0.94756 1.21071 0.92353 1.02167 1.00837 1.21019 0.96593 0.84068 0.99722 1.20768 0.92760 0.98348 1.04352 1.20344 0.91934 0.87522 1.22066 1.98327 1.89535 1.14941 1.97688 0.89711 0.90097 0.89764 0.83958 0.83249 0.91475 0.91453 0.95333 0.95753 0.92390 0.82754 0.84097 0.88966 0.88815 0.89641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 10.31 36.01 0.37 -0.07 16 2 C 0.10 0.92 7.21 -82.35 -0.59 0.33 16 3 N -0.27 -3.01 12.33 33.70 0.42 -2.60 16 4 N -0.32 -3.32 3.74 -6.81 -0.03 -3.35 16 5 C 0.18 1.80 6.29 -83.61 -0.53 1.27 16 6 C -0.12 -1.21 9.74 -39.47 -0.38 -1.59 16 7 C -0.04 -0.40 9.58 -39.21 -0.38 -0.77 16 8 C -0.12 -1.45 5.87 -104.96 -0.62 -2.06 16 9 C 0.50 8.19 7.89 34.52 0.27 8.47 16 10 O -0.51 -9.51 16.13 -19.26 -0.31 -9.82 16 11 O -0.36 -6.35 9.46 -40.61 -0.38 -6.74 16 12 C 0.08 1.71 5.41 37.16 0.20 1.91 16 13 C -0.01 -0.21 4.42 -27.88 -0.12 -0.33 16 14 C -0.53 -14.73 9.66 -34.44 -0.33 -15.07 16 15 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 16 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 17 N -0.90 -26.95 13.96 55.43 0.77 -26.17 16 18 Si 0.88 20.92 27.47 -169.99 -4.67 16.25 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 21 H -0.26 -5.96 6.54 56.52 0.37 -5.59 16 22 C -0.04 -0.39 9.61 -39.20 -0.38 -0.77 16 23 C -0.14 -1.28 8.27 -39.47 -0.33 -1.61 16 24 C 0.11 0.98 6.78 -81.80 -0.55 0.42 16 25 C -0.10 -0.60 8.43 36.01 0.30 -0.30 16 26 C -0.18 -1.60 6.63 -39.95 -0.26 -1.87 16 27 Cl -0.03 -0.24 28.58 -51.86 -1.48 -1.72 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.39 8.00 -51.93 -0.42 -0.03 16 31 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.15 1.55 7.64 -52.49 -0.40 1.15 16 33 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 36 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 37 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.15 1.48 7.60 -52.49 -0.40 1.08 16 39 H 0.14 0.94 6.09 -52.48 -0.32 0.62 16 40 H 0.09 0.40 7.74 -51.93 -0.40 0.00 16 41 H 0.09 0.45 7.91 -51.93 -0.41 0.04 16 42 H 0.08 0.47 6.91 -51.93 -0.36 0.11 16 LS Contribution 377.57 15.07 5.69 5.69 Total: -1.00 -32.66 377.57 -8.59 -41.25 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -5.17 Total: -2.70 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -3.42 Total: -10.09 kcal Atomic # 7 Polarization: -33.28 SS G_CDS: 1.16 Total: -32.12 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.69 Total: -16.55 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -1.48 Total: -1.72 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.66 -8.59 -41.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021838180.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.058 kcal (2) G-P(sol) polarization free energy of solvation -32.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds