Wall clock time and date at job start Tue Mar 31 2020 06:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38279 * 119.92734 * 2 1 4 4 C 1.38113 * 120.06960 * 180.02562 * 3 2 1 5 5 C 1.38874 * 119.92953 * 359.97438 * 4 3 2 6 6 N 1.39926 * 120.06968 * 180.02562 * 5 4 3 7 7 C 1.34776 * 119.99999 * 35.08240 * 6 5 4 8 8 O 1.21282 * 120.00423 * 355.38094 * 7 6 5 9 9 C 1.50702 * 119.99596 * 175.37336 * 7 6 5 10 10 C 1.50707 * 109.46933 * 180.02562 * 9 7 6 11 11 N 1.30111 * 124.94875 * 270.02952 * 10 9 7 12 12 C 1.35787 * 109.64033 * 179.97438 * 11 10 9 13 13 C 1.39736 * 133.59912 * 179.97438 * 12 11 10 14 14 C 1.36598 * 119.88655 * 180.02562 * 13 12 11 15 15 C 1.38770 * 120.66801 * 359.97438 * 14 13 12 16 16 C 1.37855 * 120.45465 * 0.05000 * 15 14 13 17 17 C 1.38831 * 119.68874 * 359.97056 * 16 15 14 18 18 N 1.36033 * 124.94727 * 90.00279 * 10 9 7 19 19 C 1.46496 * 126.35265 * 359.97438 * 18 10 9 20 20 C 1.50707 * 109.47057 * 270.04447 * 19 18 10 21 21 H 1.08001 * 119.99964 * 359.97438 * 20 19 18 22 22 C 1.37878 * 120.00027 * 179.97438 * 20 19 18 23 23 N 1.31517 * 120.00047 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99839 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.47209 * 90.00423 * 24 22 20 26 26 H 1.48499 * 109.46904 * 210.00098 * 24 22 20 27 27 H 1.48497 * 109.47115 * 329.99848 * 24 22 20 28 28 C 1.38870 * 119.85676 * 0.27663 * 5 4 3 29 29 C 1.38110 * 119.93000 * 359.42702 * 28 5 4 30 30 H 1.09000 * 109.46916 * 90.00025 * 1 2 3 31 31 H 1.09001 * 109.46712 * 209.99863 * 1 2 3 32 32 H 1.08996 * 109.47353 * 329.99795 * 1 2 3 33 33 H 1.07999 * 119.96912 * 359.97438 * 3 2 1 34 34 H 1.07997 * 120.03468 * 179.97438 * 4 3 2 35 35 H 0.97004 * 119.99731 * 215.08851 * 6 5 4 36 36 H 1.09002 * 109.46746 * 60.00524 * 9 7 6 37 37 H 1.08993 * 109.47428 * 300.00498 * 9 7 6 38 38 H 1.08003 * 120.05301 * 0.31037 * 13 12 11 39 39 H 1.08000 * 119.66240 * 180.02562 * 14 13 12 40 40 H 1.08000 * 119.77288 * 180.02562 * 15 14 13 41 41 H 1.08001 * 120.15248 * 179.97438 * 16 15 14 42 42 H 1.09001 * 109.46981 * 30.04095 * 19 18 10 43 43 H 1.08997 * 109.47781 * 150.04430 * 19 18 10 44 44 H 0.97000 * 119.99465 * 180.02562 * 23 22 20 45 45 H 1.08005 * 120.03362 * 179.71958 * 28 5 4 46 46 H 1.07999 * 119.96520 * 180.29718 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5781 1.2018 -0.0005 5 6 4.2739 0.0000 -0.0005 6 7 5.6732 0.0001 -0.0005 7 6 6.3470 0.9552 0.6703 8 8 5.7436 1.8620 1.2038 9 6 7.8504 0.8964 0.7576 10 6 8.3535 2.0712 1.5564 11 7 8.6762 3.2286 1.0571 12 6 9.0881 4.0560 2.0519 13 6 9.5377 5.3787 2.0810 14 6 9.8903 5.9517 3.2698 15 6 9.8065 5.2335 4.4542 16 6 9.3662 3.9272 4.4496 17 6 9.0039 3.3280 3.2508 18 7 8.5358 2.0763 2.9044 19 6 8.2816 0.9606 3.8192 20 6 6.8587 1.0283 4.3110 21 1 6.2088 1.8232 3.9759 22 6 6.3865 0.0755 5.1886 23 7 5.1446 0.1344 5.6174 24 14 7.5103 -1.2997 5.7675 25 1 8.2194 -0.8735 7.0007 26 1 6.7018 -2.5116 6.0553 27 1 8.5030 -1.6073 4.7068 28 6 3.5781 -1.2018 -0.0058 29 6 2.1970 -1.1984 0.0009 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 1.6552 2.1327 -0.0004 34 1 4.1163 2.1381 -0.0010 35 1 6.1582 -0.6873 -0.4835 36 1 8.2742 0.9308 -0.2460 37 1 8.1500 -0.0302 1.2470 38 1 9.6020 5.9483 1.1657 39 1 10.2370 6.9744 3.2881 40 1 10.0886 5.7010 5.3860 41 1 9.3033 3.3726 5.3742 42 1 8.4406 0.0179 3.2955 43 1 8.9627 1.0241 4.6678 44 1 4.8126 -0.5358 6.2351 45 1 4.1164 -2.1381 -0.0104 46 1 1.6553 -2.1327 0.0017 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023549957.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:16 Heat of formation + Delta-G solvation = 64.407536 kcal Electronic energy + Delta-G solvation = -30081.497818 eV Core-core repulsion = 26129.608305 eV Total energy + Delta-G solvation = -3951.889513 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 349.153 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.60453 -40.18208 -38.36780 -36.86478 -34.78591 -34.16095 -32.34618 -32.04600 -30.88669 -30.67497 -29.96644 -27.86483 -27.61288 -25.97624 -23.03332 -22.85482 -22.26277 -21.51968 -21.12813 -20.22329 -19.21338 -17.63728 -17.25962 -16.87673 -16.77587 -16.25137 -15.39627 -15.21121 -14.95331 -14.77240 -14.38172 -14.19460 -13.93291 -13.65946 -13.53849 -13.47968 -13.29506 -13.19979 -12.85334 -12.61580 -12.44923 -12.17445 -12.06660 -11.79737 -11.65420 -11.50156 -11.43867 -11.13374 -10.95320 -10.85301 -10.81078 -10.49197 -9.95378 -9.81071 -9.48253 -9.38682 -9.35951 -8.82141 -8.68971 -7.78724 -7.70022 -7.46678 -6.27428 -4.31847 1.43913 1.49591 1.64083 2.09741 2.88171 3.00813 3.06433 3.11299 3.15787 3.49232 3.55313 4.01098 4.15116 4.40148 4.45076 4.90018 4.96607 4.97982 5.03749 5.09100 5.22203 5.32909 5.35378 5.41667 5.43082 5.54580 5.58569 5.63414 5.75745 5.88065 5.92047 5.92865 5.96400 5.99312 6.15985 6.22249 6.29957 6.34106 6.49716 6.56304 6.71593 6.73639 6.81744 6.96233 7.08149 7.18377 7.21527 7.28009 7.40982 7.56007 7.79277 8.26418 8.43512 8.47821 8.86920 9.26132 10.84627 Molecular weight = 349.15amu Principal moments of inertia in cm(-1) A = 0.009257 B = 0.003815 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3024.157144 B = 7338.298929 C = 9053.617027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.109 4.109 3 C -0.101 4.101 4 C -0.114 4.114 5 C 0.154 3.846 6 N -0.679 5.679 7 C 0.522 3.478 8 O -0.479 6.479 9 C -0.057 4.057 10 C 0.299 3.701 11 N -0.502 5.502 12 C 0.043 3.957 13 C -0.072 4.072 14 C -0.137 4.137 15 C -0.120 4.120 16 C -0.094 4.094 17 C 0.060 3.940 18 N -0.444 5.444 19 C 0.209 3.791 20 C -0.540 4.540 21 H 0.088 0.912 22 C 0.082 3.918 23 N -0.877 5.877 24 Si 0.866 3.134 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.266 1.266 28 C -0.143 4.143 29 C -0.104 4.104 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.121 0.879 34 H 0.138 0.862 35 H 0.407 0.593 36 H 0.123 0.877 37 H 0.115 0.885 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.042 0.958 43 H 0.040 0.960 44 H 0.268 0.732 45 H 0.123 0.877 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.570 -1.809 -11.457 11.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.110 4.110 3 C -0.120 4.120 4 C -0.134 4.134 5 C 0.060 3.940 6 N -0.325 5.325 7 C 0.307 3.693 8 O -0.349 6.349 9 C -0.098 4.098 10 C 0.033 3.967 11 N -0.223 5.223 12 C -0.077 4.077 13 C -0.092 4.092 14 C -0.158 4.158 15 C -0.140 4.140 16 C -0.114 4.114 17 C -0.052 4.052 18 N -0.129 5.129 19 C 0.089 3.911 20 C -0.578 4.578 21 H 0.106 0.894 22 C -0.123 4.123 23 N -0.514 5.514 24 Si 0.692 3.308 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.191 1.191 28 C -0.163 4.163 29 C -0.122 4.122 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.139 0.861 34 H 0.156 0.844 35 H 0.242 0.758 36 H 0.141 0.859 37 H 0.133 0.867 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.078 0.922 45 H 0.141 0.859 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.989 -1.138 -11.631 11.729 hybrid contribution 0.660 -1.564 1.335 2.160 sum 1.649 -2.702 -10.297 10.772 Atomic orbital electron populations 1.20727 0.91483 1.02639 1.01739 1.19847 0.95939 0.93222 1.02013 1.20910 0.93694 0.97488 0.99908 1.21287 0.94115 0.98032 0.99943 1.17673 0.82390 0.93989 0.99975 1.43380 1.04679 1.31605 1.52860 1.20257 0.89274 0.81967 0.77816 1.90802 1.69130 1.32792 1.42167 1.19983 0.92531 0.95745 1.01548 1.22175 0.98574 0.94577 0.81356 1.70253 1.20821 1.00182 1.30997 1.18999 1.04618 0.95232 0.88874 1.19835 0.99575 0.91638 0.98165 1.20466 1.03409 0.99703 0.92180 1.20731 1.01710 0.93526 0.98016 1.20047 1.00935 0.95248 0.95203 1.18862 1.03169 0.86526 0.96656 1.45452 1.48931 1.11292 1.07195 1.20089 0.99378 0.83039 0.88572 1.21184 0.94031 1.14484 1.28145 0.89361 1.24813 0.94913 0.97169 0.95382 1.69890 1.14699 1.35095 1.31689 0.87030 0.81135 0.82603 0.80043 1.19633 1.20497 1.19113 1.20834 0.94510 0.96370 1.04624 1.20726 0.93310 0.97433 1.00746 0.91647 0.91811 0.91712 0.86057 0.84400 0.75769 0.85854 0.86662 0.86203 0.86189 0.86005 0.86022 0.94060 0.94187 0.92213 0.85918 0.86077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.01 36.01 0.36 -0.78 16 2 C -0.11 -1.50 5.88 -104.59 -0.62 -2.12 16 3 C -0.10 -1.55 9.69 -39.61 -0.38 -1.93 16 4 C -0.11 -1.97 8.70 -39.39 -0.34 -2.31 16 5 C 0.15 2.47 6.30 -83.69 -0.53 1.94 16 6 N -0.68 -9.79 5.34 -9.86 -0.05 -9.85 16 7 C 0.52 9.43 7.67 -10.98 -0.08 9.34 16 8 O -0.48 -11.17 13.47 5.56 0.07 -11.09 16 9 C -0.06 -0.88 5.99 -29.03 -0.17 -1.06 16 10 C 0.30 6.10 6.35 -154.82 -0.98 5.12 16 11 N -0.50 -10.60 11.27 -8.23 -0.09 -10.70 16 12 C 0.04 0.90 7.23 -84.70 -0.61 0.29 16 13 C -0.07 -1.26 10.05 -39.61 -0.40 -1.66 16 14 C -0.14 -2.08 9.96 -39.98 -0.40 -2.48 16 15 C -0.12 -1.90 10.03 -39.52 -0.40 -2.30 16 16 C -0.09 -1.79 10.05 -39.50 -0.40 -2.19 16 17 C 0.06 1.30 6.87 -83.99 -0.58 0.72 16 18 N -0.44 -9.84 2.79 -112.43 -0.31 -10.15 16 19 C 0.21 4.79 4.75 -5.19 -0.02 4.76 16 20 C -0.54 -14.88 9.94 -34.44 -0.34 -15.23 16 21 H 0.09 2.88 8.06 -52.49 -0.42 2.46 16 22 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 23 N -0.88 -26.17 13.96 55.43 0.77 -25.40 16 24 Si 0.87 19.67 27.47 -169.99 -4.67 15.00 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.27 -5.58 6.54 56.52 0.37 -5.21 16 28 C -0.14 -2.00 9.97 -39.39 -0.39 -2.39 16 29 C -0.10 -1.38 9.69 -39.61 -0.38 -1.76 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 32 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 33 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 34 H 0.14 2.62 6.23 -52.49 -0.33 2.30 16 35 H 0.41 3.98 8.82 -40.82 -0.36 3.62 16 36 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.12 1.57 7.01 -51.93 -0.36 1.21 16 38 H 0.12 1.81 8.06 -52.48 -0.42 1.39 16 39 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 40 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 41 H 0.12 2.26 8.06 -52.49 -0.42 1.83 16 42 H 0.04 0.88 6.05 -51.93 -0.31 0.56 16 43 H 0.04 0.89 7.57 -51.93 -0.39 0.50 16 44 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 45 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 46 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 390.56 15.07 5.89 5.89 Total: -1.00 -36.16 390.56 -11.16 -47.32 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -5.99 Total: 10.85 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -6.77 Total: -11.86 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: 0.31 Total: -56.09 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.07 Total: -11.09 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.67 Total: 15.00 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.16 -11.16 -47.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023549957.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.726 kcal (2) G-P(sol) polarization free energy of solvation -36.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds