Wall clock time and date at job start Tue Mar 31 2020 05:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 110.53236 * 2 1 4 4 N 1.47318 * 110.59947 * 122.82752 * 2 1 3 5 5 C 1.34524 * 106.61917 * 118.53359 * 4 2 1 6 6 O 1.21536 * 123.76747 * 180.02562 * 5 4 2 7 7 N 1.33790 * 112.45683 * 359.97438 * 5 4 2 8 8 C 1.46507 * 124.17562 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.46880 * 89.97905 * 8 7 5 10 10 H 1.09007 * 109.46856 * 304.99776 * 9 8 7 11 11 O 1.42893 * 109.47216 * 64.99697 * 9 8 7 12 12 C 1.52995 * 109.46836 * 184.99977 * 9 8 7 13 13 O 1.42907 * 109.47180 * 174.99651 * 12 9 8 14 14 C 1.35672 * 117.00043 * 179.97438 * 13 12 9 15 15 C 1.39310 * 119.81771 * 359.72928 * 14 13 12 16 16 C 1.36440 * 120.18250 * 179.76133 * 15 14 13 17 17 C 1.40831 * 119.81205 * 0.51005 * 16 15 14 18 18 C 1.41211 * 120.17908 * 179.72401 * 17 16 15 19 19 H 1.07997 * 120.00630 * 24.56841 * 18 17 16 20 20 C 1.39895 * 120.00159 * 204.57284 * 18 17 16 21 21 N 1.30883 * 119.99564 * 17.92516 * 20 18 17 22 22 Si 1.86801 * 120.00376 * 197.93388 * 20 18 17 23 23 H 1.48500 * 109.47243 * 59.99264 * 22 20 18 24 24 H 1.48494 * 109.47205 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46828 * 299.99717 * 22 20 18 26 26 C 1.40830 * 119.64256 * 359.73925 * 17 16 15 27 27 C 1.36438 * 119.81100 * 0.02562 * 26 17 16 28 28 C 1.35121 * 111.68909 * 0.09248 * 7 5 4 29 29 O 1.21229 * 127.33726 * 179.97438 * 28 7 5 30 30 H 1.08997 * 109.47017 * 60.70370 * 1 2 3 31 31 H 1.09000 * 109.47159 * 300.70180 * 1 2 3 32 32 H 1.09003 * 109.46900 * 180.70169 * 1 2 3 33 33 H 1.09002 * 109.47412 * 59.29509 * 3 2 1 34 34 H 1.08998 * 109.47426 * 179.29607 * 3 2 1 35 35 H 1.09000 * 109.47249 * 299.29807 * 3 2 1 36 36 H 0.97002 * 126.68482 * 298.56162 * 4 2 1 37 37 H 1.08999 * 109.46981 * 209.97218 * 8 7 5 38 38 H 1.08997 * 109.47033 * 329.97790 * 8 7 5 39 39 H 0.96704 * 114.00225 * 60.00523 * 11 9 8 40 40 H 1.09000 * 109.47156 * 294.99911 * 12 9 8 41 41 H 1.09003 * 109.47062 * 54.99753 * 12 9 8 42 42 H 1.08003 * 119.91070 * 0.02562 * 15 14 13 43 43 H 1.08000 * 120.09085 * 180.25268 * 16 15 14 44 44 H 0.96998 * 119.99750 * 180.02562 * 21 20 18 45 45 H 1.08004 * 120.09853 * 179.97438 * 26 17 16 46 46 H 1.07997 * 119.90875 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0666 1.4328 0.0000 4 7 2.0483 -0.7476 1.1588 5 6 2.7600 -1.7770 0.6654 6 8 3.3285 -2.5985 1.3576 7 7 2.7712 -1.7960 -0.6723 8 6 3.4674 -2.8045 -1.4752 9 6 2.5233 -3.9762 -1.7525 10 1 2.1369 -4.3625 -0.8093 11 8 1.4363 -3.5300 -2.5656 12 6 3.2857 -5.0835 -2.4830 13 8 2.4375 -6.2230 -2.6387 14 6 2.9643 -7.3011 -3.2719 15 6 4.2758 -7.2571 -3.7398 16 6 4.8146 -8.3387 -4.3733 17 6 4.0376 -9.4979 -4.5631 18 6 4.5857 -10.6197 -5.2229 19 1 5.6549 -10.7713 -5.2329 20 6 3.7436 -11.5347 -5.8638 21 7 2.5150 -11.1957 -6.1618 22 14 4.3724 -13.2403 -6.2939 23 1 4.7872 -13.9425 -5.0530 24 1 3.2936 -14.0117 -6.9618 25 1 5.5364 -13.1225 -7.2086 26 6 2.7111 -9.5321 -4.0917 27 6 2.1888 -8.4437 -3.4559 28 6 2.0626 -0.7697 -1.1922 29 8 1.8872 -0.5169 -2.3648 30 1 -0.3633 0.5029 -0.8962 31 1 -0.3633 0.5247 0.8836 32 1 -0.3633 -1.0276 0.0126 33 1 1.7026 1.9571 0.8836 34 1 3.1563 1.4127 0.0126 35 1 1.7231 1.9494 -0.8962 36 1 1.9040 -0.5385 2.0949 37 1 3.7841 -2.3618 -2.4196 38 1 4.3410 -3.1628 -0.9307 39 1 1.7069 -3.1727 -3.4225 40 1 3.5959 -4.7245 -3.4644 41 1 4.1657 -5.3621 -1.9032 42 1 4.8690 -6.3660 -3.5970 43 1 5.8328 -8.3045 -4.7319 44 1 1.9310 -11.8303 -6.6058 45 1 2.1084 -10.4171 -4.2336 46 1 1.1716 -8.4681 -3.0941 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000024087835.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:51 Heat of formation + Delta-G solvation = -111.453963 kcal Electronic energy + Delta-G solvation = -30134.000461 eV Core-core repulsion = 25796.768918 eV Total energy + Delta-G solvation = -4337.231543 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 348.156 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.86477 -39.08733 -38.92290 -37.76284 -36.84463 -36.12858 -35.18455 -33.31261 -32.02694 -30.88556 -29.67684 -29.00680 -28.09167 -26.92430 -24.77032 -24.41092 -22.88699 -21.76262 -20.84450 -20.71091 -20.52379 -18.39614 -17.40379 -17.36678 -17.04604 -16.72762 -16.32825 -16.07533 -16.06397 -15.44359 -15.21293 -14.89045 -14.57608 -14.48077 -14.16432 -13.96730 -13.88960 -13.54849 -13.19387 -12.88445 -12.83714 -12.79864 -12.35601 -12.29645 -12.15777 -12.14266 -11.82918 -11.43068 -11.33572 -11.13566 -11.10440 -10.92030 -10.64202 -10.52788 -10.39649 -9.98002 -9.96965 -9.83876 -9.69228 -9.32917 -9.01025 -7.63474 -7.02699 -6.71409 -4.24677 1.30564 1.79745 2.64846 2.70488 2.79765 2.96086 3.08773 3.11178 3.23186 3.46484 3.82027 3.96068 3.99884 4.21632 4.26064 4.59015 4.62509 4.77722 4.88871 4.92546 4.97083 5.00884 5.08984 5.10125 5.17768 5.30435 5.40197 5.40834 5.55177 5.57492 5.67814 5.91315 6.06381 6.23335 6.37916 6.68761 6.72945 6.98499 7.04661 7.11802 7.19234 7.46245 7.55861 7.58797 7.77919 7.79639 8.01253 8.21224 8.45142 8.65699 8.90688 8.99414 10.23049 Molecular weight = 348.16amu Principal moments of inertia in cm(-1) A = 0.032081 B = 0.001818 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.579300 B =15397.809217 C =15600.143901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.117 3.883 3 C -0.146 4.146 4 N -0.722 5.722 5 C 0.703 3.297 6 O -0.539 6.539 7 N -0.570 5.570 8 C 0.089 3.911 9 C 0.095 3.905 10 H 0.112 0.888 11 O -0.545 6.545 12 C 0.042 3.958 13 O -0.316 6.316 14 C -0.010 4.010 15 C -0.167 4.167 16 C -0.198 4.198 17 C 0.088 3.912 18 C -0.464 4.464 19 H 0.076 0.924 20 C 0.075 3.925 21 N -0.798 5.798 22 Si 0.908 3.092 23 H -0.264 1.264 24 H -0.279 1.279 25 H -0.266 1.266 26 C -0.134 4.134 27 C -0.118 4.118 28 C 0.535 3.465 29 O -0.456 6.456 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.439 0.561 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.376 0.624 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.281 0.719 45 H 0.126 0.874 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.391 23.991 11.626 26.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.026 3.974 3 C -0.205 4.205 4 N -0.387 5.387 5 C 0.403 3.597 6 O -0.412 6.412 7 N -0.316 5.316 8 C -0.033 4.033 9 C 0.035 3.965 10 H 0.130 0.870 11 O -0.351 6.351 12 C -0.035 4.035 13 O -0.232 6.232 14 C -0.053 4.053 15 C -0.186 4.186 16 C -0.218 4.218 17 C 0.086 3.914 18 C -0.494 4.494 19 H 0.094 0.906 20 C -0.142 4.142 21 N -0.424 5.424 22 Si 0.733 3.267 23 H -0.189 1.189 24 H -0.204 1.204 25 H -0.191 1.191 26 C -0.153 4.153 27 C -0.137 4.137 28 C 0.322 3.678 29 O -0.324 6.324 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.283 0.717 37 H 0.121 0.879 38 H 0.128 0.872 39 H 0.224 0.776 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.091 0.909 45 H 0.143 0.857 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.877 23.342 11.720 26.277 hybrid contribution 0.845 -0.504 -0.398 1.062 sum -2.031 22.838 11.322 25.571 Atomic orbital electron populations 1.22005 0.89963 1.04249 1.04326 1.21491 0.97431 0.94152 0.84284 1.22003 1.02018 0.91952 1.04495 1.45678 1.54991 1.28956 1.09064 1.15874 0.79831 0.82281 0.81693 1.91048 1.48341 1.41187 1.60667 1.46281 1.49660 1.27997 1.07673 1.22348 0.95892 0.88451 0.96624 1.22270 0.87785 0.90615 0.95865 0.87020 1.86628 1.33027 1.83227 1.32169 1.22974 0.93757 0.87103 0.99688 1.85883 1.39938 1.21711 1.75624 1.18609 0.93501 0.88142 1.05047 1.20391 0.94382 0.99009 1.04836 1.20553 0.99899 0.93791 1.07584 1.17594 0.91788 0.91623 0.90401 1.19425 0.94603 1.05627 1.29700 0.90584 1.25886 0.94522 1.00062 0.93762 1.69828 1.07067 1.35557 1.29975 0.86376 0.79291 0.81668 0.79410 1.18890 1.20392 1.19108 1.20981 0.97175 0.97525 0.99622 1.19838 0.98199 0.92327 1.03330 1.20779 0.76974 0.80184 0.89898 1.90786 1.55910 1.69118 1.16565 0.89665 0.90293 0.91014 0.90197 0.91426 0.89657 0.71687 0.87939 0.87159 0.77622 0.92511 0.91961 0.88899 0.88734 0.90852 0.85651 0.88450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 8.98 37.16 0.33 -0.42 16 2 C 0.12 0.73 1.37 -132.09 -0.18 0.55 16 3 C -0.15 -0.58 8.98 37.16 0.33 -0.24 16 4 N -0.72 -4.86 5.90 -52.94 -0.31 -5.17 16 5 C 0.70 7.54 8.62 -88.02 -0.76 6.78 16 6 O -0.54 -7.68 17.48 5.33 0.09 -7.59 16 7 N -0.57 -5.90 2.58 -120.63 -0.31 -6.21 16 8 C 0.09 0.91 5.36 -4.04 -0.02 0.89 16 9 C 0.10 1.25 3.49 -26.73 -0.09 1.16 16 10 H 0.11 1.65 8.14 -51.92 -0.42 1.23 16 11 O -0.55 -7.68 12.97 -40.08 -0.52 -8.20 16 12 C 0.04 0.65 4.36 37.16 0.16 0.81 16 13 O -0.32 -6.58 10.09 -23.56 -0.24 -6.82 16 14 C -0.01 -0.23 6.71 -38.78 -0.26 -0.49 16 15 C -0.17 -3.79 8.96 -39.83 -0.36 -4.15 16 16 C -0.20 -4.91 9.74 -39.25 -0.38 -5.29 16 17 C 0.09 2.38 5.57 -106.81 -0.60 1.79 16 18 C -0.46 -12.39 9.04 -37.83 -0.34 -12.74 16 19 H 0.08 1.95 7.91 -52.49 -0.41 1.53 16 20 C 0.07 1.89 5.13 -17.34 -0.09 1.80 16 21 N -0.80 -20.87 10.96 55.55 0.61 -20.26 16 22 Si 0.91 18.85 29.60 -169.99 -5.03 13.82 16 23 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 24 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 26 C -0.13 -3.54 8.64 -39.25 -0.34 -3.88 16 27 C -0.12 -2.93 9.92 -39.83 -0.40 -3.32 16 28 C 0.54 5.16 6.70 -10.40 -0.07 5.09 16 29 O -0.46 -5.31 17.78 5.60 0.10 -5.21 16 30 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.44 1.85 8.96 -40.82 -0.37 1.49 16 37 H 0.10 0.88 8.01 -51.93 -0.42 0.47 16 38 H 0.11 1.06 7.86 -51.93 -0.41 0.65 16 39 H 0.38 4.33 9.05 45.56 0.41 4.74 16 40 H 0.06 0.81 7.63 -51.93 -0.40 0.41 16 41 H 0.06 0.90 7.66 -51.93 -0.40 0.50 16 42 H 0.09 1.79 6.27 -52.48 -0.33 1.46 16 43 H 0.09 2.18 8.06 -52.49 -0.42 1.75 16 44 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 45 H 0.13 3.39 6.16 -52.48 -0.32 3.07 16 46 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 391.18 15.07 5.90 5.90 Total: -1.00 -33.52 391.18 -8.35 -41.87 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -5.58 Total: 9.53 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -3.06 Total: -11.66 kcal Atomic # 7 Polarization: -31.62 SS G_CDS: -0.01 Total: -31.64 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.56 Total: -27.81 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.52 -8.35 -41.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024087835.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.581 kcal (2) G-P(sol) polarization free energy of solvation -33.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds