Wall clock time and date at job start Tue Mar 31 2020 05:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53010 * 110.53602 * 2 1 4 4 N 1.47310 * 110.59886 * 122.83218 * 2 1 3 5 5 C 1.34521 * 106.62063 * 118.52882 * 4 2 1 6 6 O 1.21538 * 123.77029 * 179.97438 * 5 4 2 7 7 N 1.33794 * 112.46163 * 0.02562 * 5 4 2 8 8 C 1.46490 * 124.17951 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47060 * 90.02177 * 8 7 5 10 10 H 1.09003 * 109.47229 * 60.00407 * 9 8 7 11 11 O 1.42899 * 109.47660 * 299.99700 * 9 8 7 12 12 C 1.53009 * 109.47268 * 179.97438 * 9 8 7 13 13 O 1.42899 * 109.47141 * 184.99996 * 12 9 8 14 14 C 1.35671 * 116.99560 * 179.97438 * 13 12 9 15 15 C 1.39308 * 119.82136 * 359.73066 * 14 13 12 16 16 C 1.36441 * 120.18494 * 179.75822 * 15 14 13 17 17 C 1.40834 * 119.81266 * 0.51469 * 16 15 14 18 18 C 1.41213 * 120.17984 * 179.72352 * 17 16 15 19 19 H 1.07998 * 120.00241 * 24.55770 * 18 17 16 20 20 C 1.39890 * 119.99995 * 204.56314 * 18 17 16 21 21 N 1.30888 * 120.00018 * 17.93884 * 20 18 17 22 22 Si 1.86800 * 120.00141 * 197.94128 * 20 18 17 23 23 H 1.48493 * 109.47225 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47136 * 119.99929 * 22 20 18 25 25 H 1.48503 * 109.47103 * 239.99839 * 22 20 18 26 26 C 1.40826 * 119.64047 * 359.73606 * 17 16 15 27 27 C 1.36444 * 119.81502 * 0.02562 * 26 17 16 28 28 C 1.35116 * 111.68183 * 0.08856 * 7 5 4 29 29 O 1.21237 * 127.34018 * 179.97438 * 28 7 5 30 30 H 1.09008 * 109.47053 * 60.70042 * 1 2 3 31 31 H 1.09000 * 109.47170 * 300.70356 * 1 2 3 32 32 H 1.09003 * 109.47420 * 180.70027 * 1 2 3 33 33 H 1.09001 * 109.46957 * 59.29880 * 3 2 1 34 34 H 1.08998 * 109.46963 * 179.29755 * 3 2 1 35 35 H 1.08997 * 109.46880 * 299.29929 * 3 2 1 36 36 H 0.97007 * 126.68856 * 298.56095 * 4 2 1 37 37 H 1.09004 * 109.47133 * 210.01866 * 8 7 5 38 38 H 1.08995 * 109.47519 * 330.02549 * 8 7 5 39 39 H 0.96698 * 113.99509 * 300.00662 * 11 9 8 40 40 H 1.09003 * 109.46766 * 305.00143 * 12 9 8 41 41 H 1.08996 * 109.46820 * 65.00020 * 12 9 8 42 42 H 1.08001 * 119.90610 * 0.02562 * 15 14 13 43 43 H 1.08005 * 120.09137 * 180.24701 * 16 15 14 44 44 H 0.96992 * 120.00244 * 179.97438 * 21 20 18 45 45 H 1.08005 * 120.09617 * 179.97438 * 26 17 16 46 46 H 1.07994 * 119.91154 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0667 1.4329 0.0000 4 7 2.0482 -0.7476 1.1587 5 6 2.7599 -1.7771 0.6653 6 8 3.3290 -2.5981 1.3574 7 7 2.7720 -1.7955 -0.6725 8 6 3.4691 -2.8032 -1.4753 9 6 2.5255 -3.9747 -1.7547 10 1 1.6525 -3.6161 -2.3001 11 8 2.1087 -4.5563 -0.5178 12 6 3.2534 -5.0270 -2.5939 13 8 2.3397 -6.0653 -2.9530 14 6 2.8290 -7.0837 -3.7040 15 6 4.1670 -7.0776 -4.0921 16 6 4.6681 -8.1004 -4.8432 17 6 3.8260 -9.1590 -5.2353 18 6 4.3351 -10.2187 -6.0176 19 1 5.3899 -10.4496 -5.9933 20 6 3.4733 -10.9694 -6.8242 21 7 2.2921 -10.4988 -7.1351 22 14 4.0080 -12.6434 -7.4576 23 1 5.3774 -12.9436 -6.9680 24 1 3.0673 -13.6821 -6.9664 25 1 4.0046 -12.6349 -8.9426 26 6 2.4735 -9.1550 -4.8431 27 6 1.9892 -8.1270 -4.0879 28 6 2.0641 -0.7687 -1.1923 29 8 1.8894 -0.5152 -2.3649 30 1 -0.3633 0.5030 -0.8963 31 1 -0.3633 0.5247 0.8836 32 1 -0.3634 -1.0276 0.0126 33 1 1.7028 1.9571 0.8836 34 1 3.1564 1.4126 0.0126 35 1 1.7232 1.9495 -0.8962 36 1 1.9040 -0.5386 2.0949 37 1 3.7870 -2.3597 -2.4190 38 1 4.3421 -3.1619 -0.9301 39 1 2.8356 -4.8975 0.0210 40 1 3.6482 -4.5618 -3.4972 41 1 4.0741 -5.4496 -2.0144 42 1 4.8104 -6.2630 -3.7940 43 1 5.7066 -8.0961 -5.1399 44 1 1.6946 -11.0191 -7.6946 45 1 1.8210 -9.9629 -5.1400 46 1 0.9522 -8.1220 -3.7866 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000024087837.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:55 Heat of formation + Delta-G solvation = -111.357195 kcal Electronic energy + Delta-G solvation = -30134.407799 eV Core-core repulsion = 25797.180452 eV Total energy + Delta-G solvation = -4337.227347 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 348.156 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.86280 -39.08903 -38.92813 -37.75228 -36.82363 -36.12192 -35.17466 -33.31344 -31.98728 -30.90545 -29.68073 -29.01000 -28.10034 -26.93063 -24.78942 -24.40257 -22.78976 -21.89093 -20.81337 -20.68358 -20.52227 -18.36309 -17.41736 -17.36981 -17.08278 -16.63519 -16.45541 -16.08455 -15.96609 -15.44712 -15.21215 -14.88858 -14.57542 -14.47688 -14.17280 -13.96322 -13.88961 -13.54599 -13.20654 -12.87858 -12.84645 -12.80582 -12.36204 -12.30277 -12.16379 -12.14322 -11.81250 -11.51106 -11.24057 -11.14046 -11.11074 -10.89384 -10.66186 -10.50525 -10.39133 -9.99974 -9.93369 -9.81357 -9.68458 -9.33672 -9.01705 -7.63769 -7.02976 -6.71834 -4.24921 1.27158 1.80068 2.67365 2.71433 2.77370 2.95730 3.09534 3.14723 3.20923 3.46228 3.82181 3.96078 3.99538 4.20594 4.28004 4.57797 4.62194 4.80101 4.90183 4.94337 4.96539 4.99139 5.06198 5.08582 5.19381 5.28676 5.39630 5.40716 5.53377 5.57222 5.67374 5.90957 6.06151 6.23017 6.40643 6.70191 6.72686 6.98198 7.00763 7.11515 7.19027 7.46226 7.56032 7.62979 7.79303 7.81660 8.01396 8.20932 8.44955 8.65685 8.90597 8.99120 10.22650 Molecular weight = 348.16amu Principal moments of inertia in cm(-1) A = 0.030646 B = 0.001822 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.426477 B =15365.386122 C =15552.617884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.118 3.882 3 C -0.147 4.147 4 N -0.723 5.723 5 C 0.709 3.291 6 O -0.537 6.537 7 N -0.568 5.568 8 C 0.087 3.913 9 C 0.096 3.904 10 H 0.109 0.891 11 O -0.544 6.544 12 C 0.042 3.958 13 O -0.316 6.316 14 C -0.010 4.010 15 C -0.168 4.168 16 C -0.198 4.198 17 C 0.088 3.912 18 C -0.463 4.463 19 H 0.077 0.923 20 C 0.074 3.926 21 N -0.798 5.798 22 Si 0.907 3.093 23 H -0.261 1.261 24 H -0.272 1.272 25 H -0.275 1.275 26 C -0.134 4.134 27 C -0.118 4.118 28 C 0.529 3.471 29 O -0.459 6.459 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.438 0.562 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.378 0.622 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.279 0.721 45 H 0.126 0.874 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.684 22.410 14.235 26.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.027 3.973 3 C -0.205 4.205 4 N -0.388 5.388 5 C 0.410 3.590 6 O -0.410 6.410 7 N -0.314 5.314 8 C -0.034 4.034 9 C 0.035 3.965 10 H 0.127 0.873 11 O -0.349 6.349 12 C -0.036 4.036 13 O -0.231 6.231 14 C -0.053 4.053 15 C -0.186 4.186 16 C -0.218 4.218 17 C 0.085 3.915 18 C -0.493 4.493 19 H 0.095 0.905 20 C -0.143 4.143 21 N -0.424 5.424 22 Si 0.731 3.269 23 H -0.185 1.185 24 H -0.197 1.197 25 H -0.201 1.201 26 C -0.153 4.153 27 C -0.137 4.137 28 C 0.315 3.685 29 O -0.328 6.328 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.283 0.717 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.226 0.774 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.090 0.910 45 H 0.144 0.856 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.398 22.163 13.574 26.100 hybrid contribution 0.970 -0.745 0.056 1.225 sum -1.428 21.418 13.630 25.427 Atomic orbital electron populations 1.22018 0.90006 1.04232 1.04397 1.21469 0.97377 0.94157 0.84254 1.22008 1.02041 0.91927 1.04502 1.45653 1.55118 1.29012 1.08972 1.15754 0.79676 0.82045 0.81530 1.91001 1.48339 1.41069 1.60592 1.46257 1.49549 1.27703 1.07910 1.22350 0.95685 0.88629 0.96779 1.22246 0.98139 0.90257 0.85862 0.87281 1.86610 1.37705 1.79629 1.30981 1.22980 0.92754 0.89251 0.98576 1.85881 1.36940 1.31501 1.68826 1.18611 0.93063 0.91287 1.02314 1.20392 0.93818 1.00207 1.04218 1.20557 0.99199 0.95804 1.06229 1.17606 0.91673 0.91374 0.90808 1.19488 0.95624 1.12384 1.21769 0.90507 1.25889 0.94426 0.99093 0.94849 1.69843 1.08190 1.36320 1.28096 0.86287 0.80041 0.81872 0.78653 1.18483 1.19738 1.20094 1.20984 0.97010 0.98324 0.98972 1.19842 0.97631 0.94304 1.01931 1.20922 0.77179 0.80398 0.89981 1.90824 1.56190 1.69187 1.16572 0.89689 0.90181 0.91032 0.90170 0.91403 0.89662 0.71704 0.87383 0.87731 0.77391 0.92038 0.92452 0.88892 0.88726 0.90967 0.85646 0.88445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 8.98 37.15 0.33 -0.41 16 2 C 0.12 0.74 1.37 -132.09 -0.18 0.56 16 3 C -0.15 -0.58 8.98 37.16 0.33 -0.25 16 4 N -0.72 -4.83 5.90 -52.93 -0.31 -5.14 16 5 C 0.71 7.45 8.17 -88.02 -0.72 6.73 16 6 O -0.54 -7.22 17.13 5.33 0.09 -7.13 16 7 N -0.57 -5.87 2.54 -120.64 -0.31 -6.18 16 8 C 0.09 0.90 5.39 -4.05 -0.02 0.87 16 9 C 0.10 1.25 3.52 -26.73 -0.09 1.16 16 10 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 11 O -0.54 -7.90 12.48 -41.25 -0.51 -8.41 16 12 C 0.04 0.64 4.37 37.16 0.16 0.80 16 13 O -0.32 -6.56 10.09 -23.55 -0.24 -6.80 16 14 C -0.01 -0.23 6.71 -38.78 -0.26 -0.49 16 15 C -0.17 -3.79 8.96 -39.83 -0.36 -4.15 16 16 C -0.20 -4.89 9.74 -39.25 -0.38 -5.28 16 17 C 0.09 2.36 5.57 -106.81 -0.60 1.77 16 18 C -0.46 -12.37 9.04 -37.83 -0.34 -12.71 16 19 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 20 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 21 N -0.80 -20.86 10.96 55.54 0.61 -20.25 16 22 Si 0.91 18.83 29.60 -169.99 -5.03 13.80 16 23 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 26 C -0.13 -3.54 8.64 -39.25 -0.34 -3.88 16 27 C -0.12 -2.93 9.92 -39.83 -0.40 -3.32 16 28 C 0.53 5.20 7.00 -10.40 -0.07 5.12 16 29 O -0.46 -5.63 17.78 5.59 0.10 -5.53 16 30 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 31 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.44 1.85 8.96 -40.82 -0.37 1.49 16 37 H 0.11 0.98 8.01 -51.93 -0.42 0.56 16 38 H 0.10 0.96 7.86 -51.93 -0.41 0.55 16 39 H 0.38 4.72 8.98 45.56 0.41 5.13 16 40 H 0.06 0.88 7.63 -51.93 -0.40 0.49 16 41 H 0.06 0.82 7.66 -51.93 -0.40 0.42 16 42 H 0.09 1.79 6.27 -52.49 -0.33 1.46 16 43 H 0.09 2.18 8.06 -52.48 -0.42 1.75 16 44 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 45 H 0.13 3.39 6.16 -52.48 -0.32 3.07 16 46 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 390.16 15.07 5.88 5.88 Total: -1.00 -33.35 390.16 -8.32 -41.68 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -5.58 Total: 9.75 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -3.02 Total: -11.67 kcal Atomic # 7 Polarization: -31.56 SS G_CDS: -0.01 Total: -31.57 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.56 Total: -27.87 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.35 -8.32 -41.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024087837.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.679 kcal (2) G-P(sol) polarization free energy of solvation -33.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds