Wall clock time and date at job start Tue Mar 31 2020 05:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31657 * 1 3 3 Si 1.86794 * 120.00164 * 2 1 4 4 H 1.48498 * 109.46964 * 239.99970 * 3 2 1 5 5 H 1.48496 * 109.47408 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47119 * 120.00219 * 3 2 1 7 7 C 1.38697 * 119.99537 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99649 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00103 * 359.97438 * 7 2 1 10 10 C 1.76197 * 99.99989 * 174.90044 * 9 7 2 11 11 C 1.38994 * 120.12609 * 6.87415 * 10 9 7 12 12 C 1.38082 * 119.98165 * 180.27557 * 11 10 9 13 13 C 1.38397 * 120.22375 * 359.69841 * 12 11 10 14 14 C 1.38219 * 120.25375 * 0.02562 * 13 12 11 15 15 C 1.38682 * 120.01727 * 0.02562 * 14 13 12 16 16 N 1.39935 * 120.11510 * 179.97438 * 15 14 13 17 17 C 1.34780 * 119.99689 * 34.42433 * 16 15 14 18 18 O 1.21292 * 120.00065 * 355.96934 * 17 16 15 19 19 C 1.50702 * 120.00023 * 175.95542 * 17 16 15 20 20 N 1.46497 * 109.47298 * 180.02562 * 19 17 16 21 21 C 1.35039 * 126.39990 * 269.98218 * 20 19 17 22 22 N 1.30502 * 108.69995 * 180.02562 * 21 20 19 23 23 C 1.34123 * 109.25712 * 0.02562 * 22 21 20 24 24 N 1.48031 * 125.99300 * 180.02562 * 23 22 21 25 25 O 1.21793 * 120.00419 * 179.97438 * 24 23 22 26 26 O 1.21798 * 119.99417 * 359.94201 * 24 23 22 27 27 C 1.34672 * 108.02068 * 359.97438 * 23 22 21 28 28 H 0.96997 * 119.99456 * 0.02562 * 1 2 3 29 29 H 1.08004 * 120.00847 * 359.97438 * 11 10 9 30 30 H 1.07999 * 119.89085 * 179.71871 * 12 11 10 31 31 H 1.08008 * 119.87041 * 180.02562 * 13 12 11 32 32 H 1.07995 * 119.98846 * 180.02562 * 14 13 12 33 33 H 0.96993 * 120.00418 * 214.43173 * 16 15 14 34 34 H 1.09005 * 109.46501 * 60.00666 * 19 17 16 35 35 H 1.08997 * 109.47208 * 300.00949 * 19 17 16 36 36 H 1.08002 * 125.65444 * 0.02562 * 21 20 19 37 37 H 1.08005 * 126.59050 * 180.26767 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3166 0.0000 0.0000 3 14 2.2506 1.6177 0.0000 4 1 3.1043 1.6963 -1.2125 5 1 1.2857 2.7464 0.0006 6 1 3.1044 1.6963 1.2125 7 6 2.0100 -1.2012 -0.0005 8 1 3.0899 -1.2012 -0.0001 9 16 1.1289 -2.7270 -0.0005 10 6 2.4726 -3.8562 -0.1555 11 6 3.7822 -3.3950 -0.0921 12 6 4.8330 -4.2818 -0.2197 13 6 4.5873 -5.6312 -0.4045 14 6 3.2887 -6.1009 -0.4633 15 6 2.2256 -5.2192 -0.3375 16 7 0.9101 -5.6925 -0.3972 17 6 0.6075 -6.9069 0.1029 18 8 1.4869 -7.6198 0.5382 19 6 -0.8236 -7.3790 0.1214 20 7 -0.8882 -8.7190 0.7099 21 6 -0.7918 -9.8912 0.0463 22 7 -0.8953 -10.8680 0.9054 23 6 -1.0604 -10.3597 2.1356 24 7 -1.2161 -11.1382 3.3849 25 8 -1.3596 -10.5615 4.4480 26 8 -1.2013 -12.3556 3.3496 27 6 -1.0586 -9.0167 2.0350 28 1 -0.4849 0.8401 -0.0004 29 1 3.9780 -2.3427 0.0520 30 1 5.8500 -3.9212 -0.1747 31 1 5.4135 -6.3198 -0.5032 32 1 3.1019 -7.1548 -0.6072 33 1 0.2160 -5.1466 -0.7986 34 1 -1.2089 -7.4105 -0.8978 35 1 -1.4252 -6.6918 0.7162 36 1 -0.6521 -10.0019 -1.0189 37 1 -1.1663 -8.3103 2.8449 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000024776443.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:51 Heat of formation + Delta-G solvation = 68.076745 kcal Electronic energy + Delta-G solvation = -26358.243610 eV Core-core repulsion = 22232.176536 eV Total energy + Delta-G solvation = -4126.067074 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.072 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.28372 -41.82094 -40.43858 -38.10335 -36.58908 -34.91077 -34.76445 -32.92740 -31.01441 -30.57442 -30.16166 -28.24255 -26.30859 -26.04583 -23.15228 -22.50451 -21.99395 -21.89250 -20.61262 -19.34576 -18.70363 -18.53971 -17.95276 -17.56422 -17.37076 -16.69411 -16.24069 -15.75017 -15.56288 -15.27767 -14.90521 -14.78039 -14.34931 -14.28241 -13.92911 -13.31250 -13.13121 -13.03252 -12.50686 -11.89488 -11.67842 -11.64009 -11.52192 -11.33789 -11.24236 -11.19780 -11.01842 -10.90153 -10.59082 -10.37854 -10.10782 -9.80182 -9.71723 -9.61098 -9.00399 -8.87641 -8.01157 -6.76658 -6.70110 -4.43349 0.07887 0.94236 1.26521 1.53016 1.84867 1.87757 2.29517 2.32993 2.78866 2.96904 3.00398 3.05080 3.16594 3.80289 3.81913 3.99300 4.05371 4.16004 4.26116 4.37818 4.41308 4.73947 4.87331 5.13887 5.20836 5.39467 5.46521 5.64170 5.86223 5.96779 6.06801 6.29437 6.30247 6.57257 6.61089 6.84468 6.86990 7.00189 7.24047 7.31766 7.42790 7.67728 7.85089 7.95752 8.79101 10.36979 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.016073 B = 0.002376 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.610311 B =11782.810088 C =12646.093454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.079 3.921 3 Si 0.925 3.075 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.549 4.549 8 H 0.095 0.905 9 S 0.038 5.962 10 C -0.098 4.098 11 C -0.131 4.131 12 C -0.107 4.107 13 C -0.150 4.150 14 C -0.097 4.097 15 C 0.111 3.889 16 N -0.645 5.645 17 C 0.492 3.508 18 O -0.512 6.512 19 C 0.081 3.919 20 N -0.432 5.432 21 C 0.238 3.762 22 N -0.449 5.449 23 C 0.041 3.959 24 N 0.067 4.933 25 O -0.162 6.162 26 O -0.136 6.136 27 C 0.080 3.920 28 H 0.275 0.725 29 H 0.141 0.859 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.128 0.872 33 H 0.414 0.586 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.230 0.770 37 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.771 -10.608 -3.521 11.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.131 4.131 3 Si 0.750 3.250 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.696 4.696 8 H 0.113 0.887 9 S 0.293 5.707 10 C -0.215 4.215 11 C -0.156 4.156 12 C -0.128 4.128 13 C -0.174 4.174 14 C -0.119 4.119 15 C 0.009 3.991 16 N -0.290 5.290 17 C 0.276 3.724 18 O -0.387 6.387 19 C -0.044 4.044 20 N -0.113 5.113 21 C -0.048 4.048 22 N -0.168 5.168 23 C -0.168 4.168 24 N 0.589 4.411 25 O -0.373 6.373 26 O -0.357 6.357 27 C -0.063 4.063 28 H 0.085 0.915 29 H 0.158 0.842 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.146 0.854 33 H 0.251 0.749 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.247 0.753 37 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -3.672 -11.304 -3.878 12.502 hybrid contribution 1.534 2.224 0.126 2.705 sum -2.138 -9.080 -3.752 10.055 Atomic orbital electron populations 1.69965 1.06101 1.28627 1.45134 1.25094 0.95198 0.99714 0.93135 0.86088 0.79354 0.80136 0.79407 1.19407 1.20483 1.19400 1.23225 0.95906 0.90359 1.60090 0.88717 1.83010 1.05936 0.97832 1.83953 1.22540 1.00804 0.96087 1.02102 1.21331 0.90940 1.00860 1.02499 1.21035 0.98448 0.93360 0.99960 1.20776 0.95860 0.95427 1.05302 1.20920 0.91521 0.99190 1.00223 1.17037 0.82787 0.91512 1.07756 1.43157 1.10150 1.17639 1.58092 1.20483 0.90447 0.82466 0.78997 1.90808 1.48206 1.54164 1.45507 1.21998 0.97007 0.81751 1.03658 1.45224 1.51311 1.08263 1.06490 1.25260 1.01998 0.77502 1.00004 1.69748 1.18017 1.31452 0.97537 1.20532 1.20412 0.88385 0.87489 1.42234 0.97544 1.00840 1.00496 1.94570 1.53868 1.72997 1.15846 1.94575 1.53029 0.94838 1.93265 1.22361 1.00742 0.95691 0.87473 0.91467 0.84217 0.86829 0.86814 0.85378 0.74856 0.84110 0.84226 0.75348 0.77680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.17 13.22 55.49 0.73 -21.44 16 2 C 0.08 1.95 5.49 -17.46 -0.10 1.85 16 3 Si 0.93 18.95 29.55 -169.99 -5.02 13.92 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.55 -13.40 9.07 30.90 0.28 -13.12 16 8 H 0.10 2.23 4.83 -52.49 -0.25 1.97 16 9 S 0.04 0.82 20.53 -107.50 -2.21 -1.39 16 10 C -0.10 -1.89 6.12 -38.75 -0.24 -2.12 16 11 C -0.13 -2.46 9.26 -39.36 -0.36 -2.83 16 12 C -0.11 -1.74 10.03 -39.58 -0.40 -2.13 16 13 C -0.15 -2.32 10.04 -39.53 -0.40 -2.72 16 14 C -0.10 -1.57 8.69 -39.42 -0.34 -1.92 16 15 C 0.11 1.84 6.32 -83.45 -0.53 1.31 16 16 N -0.64 -8.08 5.03 -9.70 -0.05 -8.12 16 17 C 0.49 5.32 7.74 -10.98 -0.09 5.24 16 18 O -0.51 -7.63 13.85 5.55 0.08 -7.55 16 19 C 0.08 0.44 6.63 -5.19 -0.03 0.41 16 20 N -0.43 -3.41 2.24 -119.86 -0.27 -3.68 16 21 C 0.24 1.99 12.56 -90.38 -1.14 0.86 16 22 N -0.45 -5.61 11.23 -11.69 -0.13 -5.74 16 23 C 0.04 0.53 8.02 -145.54 -1.17 -0.64 16 24 N 0.07 0.99 4.45 32.62 0.15 1.14 16 25 O -0.16 -2.34 19.02 -29.46 -0.56 -2.90 16 26 O -0.14 -2.17 19.24 -29.46 -0.57 -2.74 16 27 C 0.08 0.78 11.25 -16.56 -0.19 0.59 16 28 H 0.28 6.63 8.31 -40.82 -0.34 6.29 16 29 H 0.14 2.75 4.95 -52.48 -0.26 2.49 16 30 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 31 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 32 H 0.13 2.02 6.19 -52.49 -0.32 1.70 16 33 H 0.41 4.42 7.96 -40.82 -0.32 4.10 16 34 H 0.14 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.14 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.23 0.89 8.06 -52.49 -0.42 0.46 16 37 H 0.21 1.51 8.06 -52.48 -0.42 1.09 16 LS Contribution 351.66 15.07 5.30 5.30 Total: -1.00 -33.61 351.66 -10.07 -43.68 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -2.83 Total: 4.74 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -4.69 Total: -15.22 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.43 Total: -37.84 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -1.05 Total: -13.19 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.02 Total: 13.92 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.21 Total: -1.39 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.61 -10.07 -43.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024776443.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.758 kcal (2) G-P(sol) polarization free energy of solvation -33.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds