Wall clock time and date at job start Tue Mar 31 2020 05:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35898 * 117.00239 * 2 1 4 4 C 1.38732 * 120.05895 * 179.97438 * 3 2 1 5 5 C 1.38142 * 119.94527 * 179.97438 * 4 3 2 6 6 C 1.38263 * 120.05745 * 0.02562 * 5 4 3 7 7 C 1.50695 * 119.94850 * 179.97438 * 6 5 4 8 8 N 1.46902 * 109.47350 * 89.99751 * 7 6 5 9 9 C 1.46955 * 111.00038 * 170.00491 * 8 7 6 10 10 C 1.53055 * 109.36220 * 183.19169 * 9 8 7 11 11 N 1.46965 * 109.36354 * 301.59453 * 10 9 8 12 12 C 1.46889 * 110.99870 * 183.18786 * 11 10 9 13 13 C 1.50706 * 109.47109 * 170.00198 * 12 11 10 14 14 O 1.21281 * 119.99699 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00080 * 180.02562 * 13 12 11 16 16 C 1.46506 * 119.99969 * 180.02562 * 15 13 12 17 17 C 1.50696 * 109.47148 * 179.72251 * 16 15 13 18 18 H 1.08002 * 120.00318 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99922 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99824 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99920 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47212 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46550 * 120.00565 * 21 19 17 24 24 H 1.48492 * 109.47285 * 240.00185 * 21 19 17 25 25 C 1.46959 * 110.87772 * 59.32159 * 11 10 9 26 26 C 1.46955 * 111.00055 * 293.80339 * 8 7 6 27 27 C 1.38271 * 120.11141 * 0.27049 * 6 5 4 28 28 C 1.38149 * 120.05223 * 359.45486 * 27 6 5 29 29 H 1.08997 * 109.46875 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47137 * 300.00321 * 1 2 3 31 31 H 1.08994 * 109.46900 * 60.00441 * 1 2 3 32 32 H 1.07997 * 120.02578 * 359.95740 * 4 3 2 33 33 H 1.08001 * 119.97333 * 180.02562 * 5 4 3 34 34 H 1.09007 * 109.47023 * 330.00348 * 7 6 5 35 35 H 1.08994 * 109.47694 * 210.00121 * 7 6 5 36 36 H 1.08990 * 109.49170 * 63.22275 * 9 8 7 37 37 H 1.08999 * 109.48583 * 303.15398 * 9 8 7 38 38 H 1.08995 * 109.48843 * 181.63413 * 10 9 8 39 39 H 1.08997 * 109.49354 * 61.56293 * 10 9 8 40 40 H 1.09004 * 109.47256 * 50.00565 * 12 11 10 41 41 H 1.08998 * 109.47820 * 290.00375 * 12 11 10 42 42 H 0.97005 * 120.00161 * 359.72088 * 15 13 12 43 43 H 1.09001 * 109.46512 * 299.72412 * 16 15 13 44 44 H 1.08998 * 109.47174 * 59.71534 * 16 15 13 45 45 H 0.97005 * 119.99648 * 179.97438 * 20 19 17 46 46 H 1.09007 * 109.48694 * 60.64644 * 25 11 10 47 47 H 1.09001 * 109.48949 * 180.71065 * 25 11 10 48 48 H 1.09002 * 109.49203 * 296.77871 * 26 8 7 49 49 H 1.09010 * 109.48790 * 56.84128 * 26 8 7 50 50 H 1.07993 * 119.97092 * 179.70294 * 27 6 5 51 51 H 1.08003 * 120.02818 * 180.27451 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 3.4314 1.2848 0.0005 5 6 4.0562 2.5169 0.0000 6 6 3.3021 3.6757 -0.0005 7 6 3.9861 5.0185 -0.0005 8 7 4.2091 5.4545 -1.3855 9 6 4.6549 6.8541 -1.4317 10 6 4.7987 7.2929 -2.8910 11 7 5.7603 6.4141 -3.5715 12 6 5.9831 6.8501 -4.9564 13 6 7.1437 6.0880 -5.5424 14 8 7.7280 5.2633 -4.8721 15 7 7.5330 6.3238 -6.8110 16 6 8.6609 5.5825 -7.3808 17 6 8.8857 6.0254 -8.8036 18 1 8.2515 6.7830 -9.2399 19 6 9.9009 5.4636 -9.5483 20 7 10.6728 4.5407 -9.0171 21 14 10.1791 6.0121 -11.3122 22 1 9.1831 7.0541 -11.6694 23 1 11.5487 6.5701 -11.4468 24 1 10.0270 4.8486 -12.2222 25 6 5.3145 5.0145 -3.5252 26 6 5.1705 4.5758 -2.0660 27 6 1.9212 3.6048 0.0051 28 6 1.2916 2.3751 -0.0001 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 4.0209 0.3799 0.0017 33 1 5.1346 2.5750 0.0000 34 1 4.9440 4.9383 0.5137 35 1 3.3580 5.7464 0.5129 36 1 5.6169 6.9461 -0.9278 37 1 3.9205 7.4863 -0.9326 38 1 5.1572 8.3215 -2.9277 39 1 3.8308 7.2267 -3.3878 40 1 6.2051 7.9172 -4.9702 41 1 5.0871 6.6578 -5.5466 42 1 7.0635 6.9810 -7.3482 43 1 9.5580 5.7780 -6.7933 44 1 8.4405 4.5152 -7.3630 45 1 11.3869 4.1452 -9.5412 46 1 4.3523 4.9225 -4.0292 47 1 6.0488 4.3823 -4.0243 48 1 6.1385 4.6420 -1.5692 49 1 4.8121 3.5470 -2.0293 50 1 1.3344 4.5114 0.0095 51 1 0.2130 2.3201 -0.0001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025318202.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:27 Heat of formation + Delta-G solvation = -31.008822 kcal Electronic energy + Delta-G solvation = -29821.421734 eV Core-core repulsion = 25721.230310 eV Total energy + Delta-G solvation = -4100.191423 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.49708 -39.64668 -38.56593 -37.59907 -35.24098 -34.07630 -32.32044 -31.57152 -31.33191 -30.73336 -29.04825 -27.89044 -27.00192 -25.36056 -23.74366 -23.53607 -22.73709 -22.17633 -21.17129 -19.78431 -19.60421 -18.42896 -17.09569 -16.54901 -16.46394 -16.04302 -15.93719 -15.61636 -15.28786 -15.20043 -14.94656 -14.75536 -14.46805 -14.26661 -14.09956 -13.95938 -13.79497 -13.67822 -13.35629 -12.87253 -12.59575 -12.43822 -12.27277 -12.21145 -11.92831 -11.81729 -11.68947 -11.38614 -11.37344 -11.19576 -11.03146 -10.94969 -10.92736 -10.75368 -10.69908 -10.29802 -9.36564 -9.22237 -8.97958 -8.72331 -8.55344 -8.30209 -8.14597 -7.82681 -6.15840 -4.22544 1.09520 1.16061 2.96714 3.23862 3.30847 3.33892 3.39698 3.42302 3.71117 3.97926 4.27825 4.45682 4.47359 4.59278 4.61267 4.74386 4.78088 4.82898 4.97264 5.08707 5.09178 5.12007 5.18695 5.20325 5.26572 5.31360 5.38528 5.44602 5.46928 5.50232 5.55822 5.63595 5.66056 5.73774 5.79461 5.87123 6.00905 6.08250 6.09720 6.22145 6.39687 6.49735 6.82727 6.90018 7.07623 7.10611 7.19540 7.35150 7.48148 7.54204 7.69558 7.98592 8.66428 8.80984 9.15711 9.44379 10.94387 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014478 B = 0.001826 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.511551 B =15331.054100 C =16561.011765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.124 3.876 4 C -0.151 4.151 5 C -0.072 4.072 6 C -0.112 4.112 7 C 0.098 3.902 8 N -0.536 5.536 9 C 0.059 3.941 10 C 0.058 3.942 11 N -0.521 5.521 12 C 0.036 3.964 13 C 0.499 3.501 14 O -0.539 6.539 15 N -0.715 5.715 16 C 0.251 3.749 17 C -0.543 4.543 18 H 0.063 0.937 19 C 0.063 3.937 20 N -0.885 5.885 21 Si 0.904 3.096 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.054 3.946 26 C 0.059 3.941 27 C -0.059 4.059 28 C -0.210 4.210 29 H 0.099 0.901 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.043 0.957 35 H 0.080 0.920 36 H 0.044 0.956 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.040 0.960 40 H 0.098 0.902 41 H 0.058 0.942 42 H 0.389 0.611 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.265 0.735 46 H 0.033 0.967 47 H 0.103 0.897 48 H 0.045 0.955 49 H 0.081 0.919 50 H 0.124 0.876 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.919 -0.273 20.708 30.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.079 3.921 4 C -0.169 4.169 5 C -0.091 4.091 6 C -0.113 4.113 7 C -0.029 4.029 8 N -0.261 5.261 9 C -0.069 4.069 10 C -0.071 4.071 11 N -0.246 5.246 12 C -0.095 4.095 13 C 0.283 3.717 14 O -0.417 6.417 15 N -0.364 5.364 16 C 0.130 3.870 17 C -0.581 4.581 18 H 0.081 0.919 19 C -0.141 4.141 20 N -0.523 5.523 21 Si 0.731 3.269 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.074 4.074 26 C -0.069 4.069 27 C -0.078 4.078 28 C -0.229 4.229 29 H 0.117 0.883 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.062 0.938 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.059 0.941 40 H 0.116 0.884 41 H 0.076 0.924 42 H 0.222 0.778 43 H 0.044 0.956 44 H 0.044 0.956 45 H 0.075 0.925 46 H 0.051 0.949 47 H 0.121 0.879 48 H 0.063 0.937 49 H 0.099 0.901 50 H 0.142 0.858 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -21.224 -1.183 21.134 29.975 hybrid contribution -0.287 0.707 -1.349 1.550 sum -21.510 -0.477 19.785 29.230 Atomic orbital electron populations 1.23045 0.78438 1.03903 1.01338 1.86072 1.21360 1.27099 1.88756 1.19053 0.92396 0.84108 0.96559 1.20413 0.91375 0.98687 1.06447 1.20931 0.99905 0.91111 0.97158 1.19632 0.93629 0.94573 1.03453 1.20941 0.98869 0.93474 0.89636 1.62232 1.46711 1.02538 1.14668 1.22127 0.99182 0.89047 0.96499 1.22166 0.94236 0.96730 0.93949 1.61801 1.45538 1.02850 1.14376 1.21990 0.97371 1.00601 0.89545 1.20304 0.85125 0.83853 0.82442 1.90620 1.56133 1.34983 1.60000 1.46456 1.35334 1.42313 1.12343 1.19079 0.83258 0.91844 0.92778 1.21276 1.16394 1.23426 0.97004 0.91868 1.24960 0.95474 0.94767 0.98881 1.69988 1.18902 1.26304 1.37064 0.86364 0.78156 0.78522 0.83879 1.19652 1.20801 1.20819 1.22339 0.99277 0.89641 0.96107 1.22218 0.93687 0.96758 0.94261 1.20767 0.93841 0.96860 0.96295 1.21209 0.99901 0.92381 1.09360 0.88285 0.92727 0.92597 0.85183 0.85386 0.93846 0.90132 0.93780 0.90445 0.90286 0.94145 0.88406 0.92449 0.77847 0.95556 0.95639 0.92519 0.94856 0.87894 0.93702 0.90109 0.85791 0.85632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.11 10.50 -19.42 -0.20 -3.32 16 3 C 0.12 1.26 6.69 -39.22 -0.26 1.00 16 4 C -0.15 -1.53 9.99 -39.43 -0.39 -1.92 16 5 C -0.07 -0.71 7.91 -39.61 -0.31 -1.02 16 6 C -0.11 -1.08 4.89 -104.60 -0.51 -1.59 16 7 C 0.10 0.89 5.12 -4.98 -0.03 0.86 16 8 N -0.54 -5.84 4.70 -235.91 -1.11 -6.95 16 9 C 0.06 0.60 5.61 -3.77 -0.02 0.58 16 10 C 0.06 0.64 5.61 -3.76 -0.02 0.62 16 11 N -0.52 -7.57 4.45 -235.90 -1.05 -8.61 16 12 C 0.04 0.53 5.45 -4.98 -0.03 0.50 16 13 C 0.50 9.95 7.53 -10.98 -0.08 9.86 16 14 O -0.54 -12.89 14.34 5.56 0.08 -12.81 16 15 N -0.72 -15.04 5.55 -61.47 -0.34 -15.38 16 16 C 0.25 6.69 5.43 -5.19 -0.03 6.66 16 17 C -0.54 -14.78 9.28 -34.44 -0.32 -15.10 16 18 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 21 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 25 C 0.05 0.81 5.26 -3.77 -0.02 0.79 16 26 C 0.06 0.75 5.25 -3.77 -0.02 0.73 16 27 C -0.06 -0.53 9.69 -39.60 -0.38 -0.91 16 28 C -0.21 -1.87 9.04 -39.43 -0.36 -2.23 16 29 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 31 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 32 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.13 1.14 7.99 -52.49 -0.42 0.72 16 34 H 0.04 0.39 8.06 -51.92 -0.42 -0.03 16 35 H 0.08 0.61 7.97 -51.93 -0.41 0.20 16 36 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.62 8.07 -51.93 -0.42 0.20 16 38 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 39 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.10 1.21 8.03 -51.93 -0.42 0.80 16 41 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 42 H 0.39 6.98 8.32 -40.82 -0.34 6.64 16 43 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.03 0.49 8.14 -51.92 -0.42 0.07 16 47 H 0.10 1.86 5.85 -51.93 -0.30 1.56 16 48 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.08 1.01 5.95 -51.92 -0.31 0.70 16 50 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 51 H 0.13 0.85 6.30 -52.48 -0.33 0.52 16 LS Contribution 408.74 15.07 6.16 6.16 Total: -1.00 -33.56 408.74 -10.99 -44.54 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -8.35 Total: 4.32 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -1.89 Total: 1.63 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -1.76 Total: -56.42 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.12 Total: -16.13 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.56 -10.99 -44.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025318202.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.534 kcal (2) G-P(sol) polarization free energy of solvation -33.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds