Wall clock time and date at job start Tue Mar 31 2020 05:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46700 * 2 1 4 4 C 1.53081 * 109.42453 * 180.47332 * 3 2 1 5 5 C 1.52468 * 109.57826 * 300.85393 * 4 3 2 6 6 C 1.52475 * 110.74934 * 58.58258 * 5 4 3 7 7 C 1.53016 * 109.46008 * 120.03416 * 2 1 3 8 8 N 1.46834 * 110.74321 * 295.84188 * 5 4 3 9 9 C 1.34681 * 106.43099 * 241.77151 * 8 5 4 10 10 O 1.21543 * 123.79255 * 179.85250 * 9 8 5 11 11 N 1.33869 * 112.41988 * 359.59073 * 9 8 5 12 12 C 1.46497 * 124.19835 * 180.26937 * 11 9 8 13 13 N 1.46896 * 109.47382 * 84.19120 * 12 11 9 14 14 C 1.46904 * 110.99892 * 85.19180 * 13 12 11 15 15 C 1.50694 * 109.47195 * 189.99978 * 14 13 12 16 16 H 1.08007 * 120.00245 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00190 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99565 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00111 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47018 * 59.99997 * 19 17 15 21 21 H 1.48501 * 109.47036 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46851 * 300.00079 * 19 17 15 23 23 C 1.46897 * 111.00143 * 209.14270 * 13 12 11 24 24 C 1.53005 * 109.47094 * 76.00713 * 23 13 12 25 25 C 1.47200 * 109.47120 * 174.86903 * 24 23 13 26 26 N 9.85618 * 129.04431 * 279.28298 * 4 1 2 27 27 C 1.34910 * 111.60621 * 0.26358 * 11 9 8 28 28 O 1.21236 * 127.25245 * 180.02562 * 27 11 9 29 29 H 1.08998 * 109.47047 * 59.99908 * 1 2 3 30 30 H 1.08990 * 109.46909 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46691 * 300.00474 * 1 2 3 32 32 H 1.08997 * 109.46669 * 240.01755 * 2 1 3 33 33 H 1.08997 * 109.47948 * 60.48644 * 3 2 1 34 34 H 1.09001 * 109.47604 * 300.45287 * 3 2 1 35 35 H 1.08998 * 109.45436 * 180.82506 * 4 3 2 36 36 H 1.08998 * 109.45592 * 60.88897 * 4 3 2 37 37 H 1.09003 * 109.44761 * 61.44349 * 6 5 4 38 38 H 1.08998 * 109.45604 * 181.38131 * 6 5 4 39 39 H 1.08994 * 109.47650 * 299.50746 * 7 2 1 40 40 H 1.08997 * 109.47595 * 59.53666 * 7 2 1 41 41 H 0.97003 * 126.78482 * 61.64401 * 8 5 4 42 42 H 1.09001 * 109.47116 * 204.19504 * 12 11 9 43 43 H 1.09004 * 109.46765 * 324.19498 * 12 11 9 44 44 H 1.09002 * 109.46627 * 310.00137 * 14 13 12 45 45 H 1.08996 * 109.47030 * 69.99671 * 14 13 12 46 46 H 0.97004 * 119.99860 * 180.02562 * 18 17 15 47 47 H 1.09000 * 109.47242 * 196.00633 * 23 13 12 48 48 H 1.08999 * 109.47336 * 316.00539 * 23 13 12 49 49 H 1.09004 * 109.46665 * 294.86697 * 24 23 13 50 50 H 1.08994 * 109.46871 * 54.86382 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5707 1.4415 -0.0119 5 6 4.0906 0.7010 1.2153 6 6 3.5705 -0.7320 1.2421 7 6 2.0398 -0.7221 1.2490 8 7 3.7111 1.4047 2.4468 9 6 4.8604 1.7604 3.0520 10 8 4.9109 2.3672 4.1039 11 7 5.9412 1.3656 2.3677 12 6 7.3210 1.6115 2.7942 13 7 7.7350 0.5661 3.7395 14 6 8.2369 -0.6175 3.0287 15 6 8.4194 -1.7503 4.0057 16 1 8.1864 -1.6053 5.0503 17 6 8.8840 -2.9718 3.5661 18 7 9.1682 -3.1481 2.2943 19 14 9.1096 -4.3761 4.7771 20 1 7.8062 -4.6956 5.4129 21 1 9.6158 -5.5729 4.0584 22 1 10.0855 -3.9762 5.8225 23 6 8.7373 1.0773 4.6839 24 6 8.0497 1.9539 5.7326 25 6 9.0320 2.3656 6.7486 26 7 9.7901 2.6832 7.5327 27 6 5.6020 0.7132 1.2366 28 8 6.3516 0.2367 0.4114 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8899 32 1 1.8932 -0.5136 -0.8901 33 1 1.6838 1.9540 0.8942 34 1 1.6700 1.9588 -0.8859 35 1 3.9346 2.4688 0.0029 36 1 3.9264 0.9437 -0.9140 37 1 3.9261 -1.2638 0.3595 38 1 3.9343 -1.2336 2.1388 39 1 1.6836 -0.2038 2.1392 40 1 1.6696 -1.7473 1.2526 41 1 2.8104 1.5805 2.7614 42 1 7.9782 1.5962 1.9248 43 1 7.3831 2.5855 3.2796 44 1 7.5206 -0.9113 2.2614 45 1 9.1934 -0.3826 2.5619 46 1 9.4947 -4.0076 1.9849 47 1 9.2316 0.2405 5.1774 48 1 9.4767 1.6689 4.1441 49 1 7.6334 2.8383 5.2503 50 1 7.2486 1.3891 6.2094 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025765457.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:32 Heat of formation + Delta-G solvation = -24.538315 kcal Electronic energy + Delta-G solvation = -32389.658905 eV Core-core repulsion = 28224.322153 eV Total energy + Delta-G solvation = -4165.336752 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 348.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.47546 -38.84102 -38.23024 -37.36684 -36.06704 -35.59950 -33.88130 -32.69050 -31.24252 -31.16536 -30.65762 -27.80081 -26.75658 -25.17261 -23.44233 -23.14196 -23.02664 -21.78827 -20.70775 -20.20814 -19.50919 -17.78069 -17.21990 -16.65989 -16.46278 -16.33984 -15.62477 -15.37787 -15.00177 -14.86331 -14.64142 -14.53649 -14.50879 -14.30814 -13.87678 -13.62422 -13.52415 -13.16670 -13.10695 -12.96328 -12.57354 -12.42748 -12.33072 -12.09372 -11.93641 -11.87220 -11.76967 -11.51644 -11.45478 -11.13989 -11.04165 -10.81406 -10.69424 -10.65808 -10.52357 -10.48962 -10.32654 -10.02050 -9.73029 -9.61687 -9.33756 -9.20791 -8.49196 -7.62254 -6.06598 -4.09800 1.92283 2.45301 3.01799 3.06802 3.24244 3.31023 3.35041 3.35637 3.38669 4.02678 4.21542 4.34308 4.36378 4.40106 4.61616 4.74848 4.81923 4.91903 5.08535 5.17009 5.17687 5.25590 5.28892 5.32193 5.40750 5.46368 5.51473 5.52950 5.54313 5.55205 5.71112 5.75922 5.86280 5.87473 5.89620 5.93614 5.94076 5.98695 6.08357 6.19482 6.26643 6.49271 6.90881 7.07890 7.17414 7.35190 7.62120 7.70635 7.83453 7.90836 8.02497 8.35970 8.40503 8.96599 9.54698 11.03249 Molecular weight = 348.19amu Principal moments of inertia in cm(-1) A = 0.009233 B = 0.003859 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3031.977763 B = 7254.112300 C = 9195.696540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.110 4.110 4 C -0.113 4.113 5 C 0.128 3.872 6 C -0.116 4.116 7 C -0.110 4.110 8 N -0.722 5.722 9 C 0.711 3.289 10 O -0.544 6.544 11 N -0.562 5.562 12 C 0.279 3.721 13 N -0.545 5.545 14 C 0.194 3.806 15 C -0.516 4.516 16 H 0.064 0.936 17 C 0.060 3.940 18 N -0.891 5.891 19 Si 0.895 3.105 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.073 3.927 24 C -0.027 4.027 25 C 0.221 3.779 26 N -0.457 5.457 27 C 0.530 3.470 28 O -0.452 6.452 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.433 0.567 42 H 0.073 0.927 43 H 0.094 0.906 44 H 0.039 0.961 45 H -0.003 1.003 46 H 0.262 0.738 47 H 0.102 0.898 48 H 0.036 0.964 49 H 0.103 0.897 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.294 9.374 -7.288 20.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.147 4.147 4 C -0.151 4.151 5 C 0.037 3.963 6 C -0.154 4.154 7 C -0.147 4.147 8 N -0.387 5.387 9 C 0.412 3.588 10 O -0.417 6.417 11 N -0.309 5.309 12 C 0.068 3.932 13 N -0.271 5.271 14 C 0.070 3.930 15 C -0.554 4.554 16 H 0.082 0.918 17 C -0.142 4.142 18 N -0.530 5.530 19 Si 0.722 3.278 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.057 4.057 24 C -0.067 4.067 25 C -0.097 4.097 26 N -0.135 5.135 27 C 0.315 3.685 28 O -0.319 6.319 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.277 0.723 42 H 0.091 0.909 43 H 0.112 0.888 44 H 0.057 0.943 45 H 0.015 0.985 46 H 0.072 0.928 47 H 0.120 0.880 48 H 0.054 0.946 49 H 0.121 0.879 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.902 9.636 -5.861 19.495 hybrid contribution 0.128 -0.834 -0.017 0.844 sum -15.774 8.802 -5.878 18.996 Atomic orbital electron populations 1.21818 0.95080 1.01819 1.01699 1.21227 0.95543 0.95900 0.98913 1.21571 0.93988 0.96722 1.02436 1.21660 0.96736 1.00628 0.96123 1.21011 0.92448 0.95527 0.87301 1.21677 0.96336 0.92540 1.04867 1.21576 0.94188 1.01194 0.97775 1.45551 1.07862 1.61170 1.24131 1.15878 0.80876 0.79109 0.82944 1.90948 1.85635 1.44338 1.20797 1.46545 1.08746 1.52956 1.22616 1.22012 0.78896 0.95948 0.96368 1.61652 1.40955 1.06419 1.18112 1.19864 0.94191 0.85187 0.93761 1.21064 1.43892 0.95511 0.94949 0.91781 1.24957 0.95458 0.98639 0.95165 1.69961 1.44578 1.24546 1.13881 0.86615 0.78578 0.81511 0.81048 1.20183 1.21329 1.20212 1.21825 0.92349 0.98607 0.92887 1.19427 0.93870 1.01578 0.91871 1.29358 0.93862 0.92569 0.93907 1.81155 1.10711 1.10197 1.11438 1.20618 0.90217 0.76449 0.81166 1.90846 1.58339 1.42106 1.40632 0.92736 0.92598 0.92704 0.90638 0.91733 0.91142 0.90874 0.89366 0.89373 0.89987 0.91768 0.90954 0.72282 0.90896 0.88798 0.94296 0.98527 0.92784 0.88007 0.94562 0.87909 0.86455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.19 37.16 0.34 -0.49 16 2 C -0.10 -0.65 2.71 -90.61 -0.25 -0.89 16 3 C -0.11 -0.71 5.10 -26.69 -0.14 -0.84 16 4 C -0.11 -0.97 4.98 -26.96 -0.13 -1.10 16 5 C 0.13 1.44 0.83 -133.10 -0.11 1.33 16 6 C -0.12 -1.27 4.97 -26.96 -0.13 -1.40 16 7 C -0.11 -0.86 5.09 -26.68 -0.14 -1.00 16 8 N -0.72 -7.85 5.25 -53.87 -0.28 -8.13 16 9 C 0.71 10.39 8.63 -87.81 -0.76 9.63 16 10 O -0.54 -9.10 17.57 5.33 0.09 -9.00 16 11 N -0.56 -8.79 2.85 -124.09 -0.35 -9.15 16 12 C 0.28 4.51 5.32 -63.32 -0.34 4.17 16 13 N -0.55 -10.37 4.52 -239.98 -1.09 -11.46 16 14 C 0.19 4.69 4.55 -4.98 -0.02 4.67 16 15 C -0.52 -13.66 8.23 -34.44 -0.28 -13.94 16 16 H 0.06 1.67 7.31 -52.48 -0.38 1.29 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -25.77 13.29 55.43 0.74 -25.03 16 19 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 C 0.07 1.22 4.69 -3.82 -0.02 1.20 16 24 C -0.03 -0.37 5.76 -29.52 -0.17 -0.54 16 25 C 0.22 3.38 15.43 -20.76 -0.32 3.06 16 26 N -0.46 -8.05 18.54 42.15 0.78 -7.27 16 27 C 0.53 8.28 6.37 -10.70 -0.07 8.22 16 28 O -0.45 -8.57 16.83 5.60 0.09 -8.48 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.38 7.37 -51.93 -0.38 0.00 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.06 0.47 7.34 -51.93 -0.38 0.09 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.43 3.65 7.75 -40.82 -0.32 3.33 16 42 H 0.07 1.21 7.61 -51.93 -0.40 0.82 16 43 H 0.09 1.28 6.38 -51.93 -0.33 0.95 16 44 H 0.04 1.04 6.57 -51.93 -0.34 0.70 16 45 H 0.00 -0.08 8.12 -51.93 -0.42 -0.50 16 46 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 47 H 0.10 1.94 6.57 -51.93 -0.34 1.60 16 48 H 0.04 0.55 8.00 -51.93 -0.42 0.14 16 49 H 0.10 1.25 6.95 -51.93 -0.36 0.89 16 50 H 0.12 1.67 8.14 -51.93 -0.42 1.24 16 LS Contribution 404.86 15.07 6.10 6.10 Total: -1.00 -32.66 404.86 -9.42 -42.08 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -7.86 Total: 0.56 kcal Atomic # 6 Polarization: 16.25 SS G_CDS: -2.63 Total: 13.62 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: -0.20 Total: -61.03 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: 0.19 Total: -17.48 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.66 -9.42 -42.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025765457.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.541 kcal (2) G-P(sol) polarization free energy of solvation -32.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds