Wall clock time and date at job start Tue Mar 31 2020 06:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46997 * 2 1 4 4 C 1.53003 * 109.46807 * 239.99891 * 2 1 3 5 5 C 1.50701 * 109.47095 * 120.00073 * 2 1 3 6 6 C 1.38411 * 119.82800 * 59.99829 * 5 2 1 7 7 C 1.37881 * 120.17530 * 179.97438 * 6 5 2 8 8 C 1.39847 * 119.82311 * 0.02710 * 7 6 5 9 9 C 1.47190 * 120.17494 * 180.02562 * 8 7 6 10 10 C 1.34865 * 120.00536 * 179.97438 * 9 8 7 11 11 C 1.46346 * 119.99704 * 179.97438 * 10 9 8 12 12 O 1.21705 * 120.00610 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99420 * 180.02562 * 11 10 9 14 14 C 1.39061 * 119.99809 * 185.20040 * 13 11 10 15 15 C 1.39534 * 119.83530 * 33.31064 * 14 13 11 16 16 C 1.36356 * 120.16417 * 180.25597 * 15 14 13 17 17 C 1.40887 * 119.82724 * 359.49609 * 16 15 14 18 18 C 1.41121 * 120.16040 * 180.23086 * 17 16 15 19 19 H 1.07997 * 120.00748 * 205.18885 * 18 17 16 20 20 C 1.39916 * 119.99899 * 25.18784 * 18 17 16 21 21 N 1.30871 * 119.99871 * 17.48246 * 20 18 17 22 22 Si 1.86801 * 120.00266 * 197.48587 * 20 18 17 23 23 H 1.48498 * 109.47368 * 94.67885 * 22 20 18 24 24 H 1.48505 * 109.47009 * 214.67940 * 22 20 18 25 25 H 1.48501 * 109.47102 * 334.67398 * 22 20 18 26 26 C 1.40890 * 119.68240 * 0.52357 * 17 16 15 27 27 C 1.36340 * 119.83069 * 359.72938 * 26 17 16 28 28 C 1.39856 * 119.66044 * 0.27120 * 8 7 6 29 29 C 1.37885 * 119.81806 * 359.40545 * 28 8 7 30 30 H 1.09007 * 109.47270 * 299.99855 * 1 2 3 31 31 H 1.08998 * 109.47215 * 60.00241 * 1 2 3 32 32 H 1.09001 * 109.47229 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46723 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.46941 * 299.99926 * 3 2 1 35 35 H 1.08994 * 109.46861 * 60.00273 * 3 2 1 36 36 H 1.09001 * 109.47171 * 299.99968 * 4 2 1 37 37 H 1.09002 * 109.46973 * 60.00287 * 4 2 1 38 38 H 1.09001 * 109.46817 * 179.97438 * 4 2 1 39 39 H 1.08002 * 119.91001 * 359.97438 * 6 5 2 40 40 H 1.07991 * 120.08915 * 180.02562 * 7 6 5 41 41 H 1.08001 * 119.99158 * 359.97438 * 9 8 7 42 42 H 1.08002 * 119.99782 * 0.02562 * 10 9 8 43 43 H 0.96993 * 120.00411 * 5.19720 * 13 11 10 44 44 H 1.07995 * 119.92114 * 359.97438 * 15 14 13 45 45 H 1.07997 * 120.08750 * 179.74096 * 16 15 14 46 46 H 0.97001 * 119.99851 * 180.02562 * 21 20 18 47 47 H 1.08004 * 120.08466 * 179.71041 * 26 17 16 48 48 H 1.08008 * 119.91946 * 179.97438 * 27 26 17 49 49 H 1.07998 * 120.08689 * 179.72727 * 28 8 7 50 50 H 1.08008 * 119.90995 * 180.31951 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0323 -0.7104 1.2305 6 6 1.6957 -2.0356 1.4460 7 6 2.1518 -2.6927 2.5690 8 6 2.9560 -2.0165 3.4919 9 6 3.4477 -2.7106 4.6932 10 6 4.2234 -2.0554 5.5807 11 6 4.7117 -2.7455 6.7753 12 8 4.4181 -3.9108 6.9677 13 7 5.4866 -2.0904 7.6625 14 6 6.0394 -2.7735 8.7402 15 6 6.4133 -4.1102 8.5970 16 6 6.9512 -4.7879 9.6509 17 6 7.1388 -4.1320 10.8835 18 6 7.6994 -4.8253 11.9774 19 1 7.4850 -4.5059 12.9866 20 6 8.5331 -5.9267 11.7547 21 7 9.0696 -6.1134 10.5757 22 14 8.8802 -7.1308 13.1400 23 1 7.9326 -8.2708 13.0542 24 1 10.2723 -7.6341 13.0211 25 1 8.7120 -6.4444 14.4462 26 6 6.7584 -2.7824 11.0207 27 6 6.2171 -2.1191 9.9597 28 6 3.2866 -0.6758 3.2703 29 6 2.8282 -0.0346 2.1389 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7490 -1.2492 37 1 1.6766 -0.2074 -2.1392 38 1 3.1299 -0.7209 -1.2495 39 1 1.0742 -2.5562 0.7325 40 1 1.8887 -3.7267 2.7356 41 1 3.1870 -3.7447 4.8638 42 1 4.4837 -1.0211 5.4102 43 1 5.6587 -1.1426 7.5492 44 1 6.2722 -4.6105 7.6504 45 1 7.2363 -5.8236 9.5398 46 1 9.6473 -6.8771 10.4212 47 1 6.8950 -2.2746 11.9641 48 1 5.9246 -1.0846 10.0634 49 1 3.9036 -0.1457 3.9807 50 1 3.0869 0.9993 1.9637 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026083816.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:53 Heat of formation + Delta-G solvation = 9.372250 kcal Electronic energy + Delta-G solvation = -28027.017944 eV Core-core repulsion = 24176.282265 eV Total energy + Delta-G solvation = -3850.735679 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 349.178 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.22605 -39.54837 -37.40136 -36.89384 -34.47829 -33.42099 -32.90778 -31.45595 -29.70221 -29.38438 -28.65120 -27.78670 -27.65772 -25.44643 -24.03351 -22.65501 -21.95230 -21.25904 -20.29326 -19.58246 -18.99711 -17.36872 -17.31430 -16.83088 -16.12364 -15.42945 -15.19588 -15.14575 -14.68907 -14.51367 -14.42941 -14.09712 -13.92580 -13.85839 -13.55947 -13.23203 -13.01276 -12.71128 -12.58344 -12.54329 -12.35573 -12.10437 -12.09483 -11.95458 -11.81676 -11.50620 -11.42897 -11.35991 -11.12007 -11.08204 -10.99387 -10.79210 -10.68074 -10.22505 -9.91621 -9.65229 -9.42568 -9.19279 -9.06851 -8.87322 -8.27996 -7.51237 -6.97174 -6.72423 -4.28403 0.44790 1.18147 1.93043 2.72602 3.08406 3.09020 3.12440 3.16943 3.54972 3.80186 3.87071 3.94244 4.18060 4.31384 4.57912 4.64906 4.65662 4.69334 4.74759 4.86304 5.07944 5.11052 5.16559 5.20411 5.27650 5.34206 5.38562 5.46097 5.47533 5.54473 5.64257 5.72637 5.73870 5.80059 5.81640 5.88274 6.01056 6.11854 6.16216 6.33564 6.34658 6.42188 6.53828 6.72285 6.82411 7.01492 7.06035 7.17046 7.30650 7.60728 7.70601 7.98132 8.06672 8.23197 8.34197 8.63739 8.80729 8.89147 9.02458 10.18786 Molecular weight = 349.18amu Principal moments of inertia in cm(-1) A = 0.031833 B = 0.001480 C = 0.001447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.388858 B =18915.487817 C =19347.503442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.031 4.031 3 C -0.145 4.145 4 C -0.139 4.139 5 C -0.066 4.066 6 C -0.118 4.118 7 C -0.096 4.096 8 C -0.070 4.070 9 C -0.039 4.039 10 C -0.194 4.194 11 C 0.526 3.474 12 O -0.535 6.535 13 N -0.643 5.643 14 C -0.007 4.007 15 C -0.085 4.085 16 C -0.155 4.155 17 C 0.105 3.895 18 C -0.458 4.458 19 H 0.079 0.921 20 C 0.074 3.926 21 N -0.790 5.790 22 Si 0.909 3.091 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.262 1.262 26 C -0.215 4.215 27 C -0.104 4.104 28 C -0.102 4.102 29 C -0.123 4.123 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.122 0.878 40 H 0.127 0.873 41 H 0.136 0.864 42 H 0.125 0.875 43 H 0.395 0.605 44 H 0.102 0.898 45 H 0.120 0.880 46 H 0.281 0.719 47 H 0.096 0.904 48 H 0.090 0.910 49 H 0.127 0.873 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.753 12.360 -21.561 27.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.031 4.031 3 C -0.202 4.202 4 C -0.196 4.196 5 C -0.066 4.066 6 C -0.136 4.136 7 C -0.114 4.114 8 C -0.070 4.070 9 C -0.059 4.059 10 C -0.214 4.214 11 C 0.316 3.684 12 O -0.415 6.415 13 N -0.285 5.285 14 C -0.100 4.100 15 C -0.105 4.105 16 C -0.175 4.175 17 C 0.103 3.897 18 C -0.487 4.487 19 H 0.097 0.903 20 C -0.144 4.144 21 N -0.415 5.415 22 Si 0.733 3.267 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.186 1.186 26 C -0.235 4.235 27 C -0.124 4.124 28 C -0.120 4.120 29 C -0.141 4.141 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.140 0.860 40 H 0.145 0.855 41 H 0.153 0.847 42 H 0.143 0.857 43 H 0.228 0.772 44 H 0.120 0.880 45 H 0.137 0.863 46 H 0.092 0.908 47 H 0.114 0.886 48 H 0.108 0.892 49 H 0.145 0.855 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.768 11.387 -21.558 27.522 hybrid contribution 0.406 -0.020 0.554 0.687 sum -12.363 11.366 -21.004 26.893 Atomic orbital electron populations 1.21897 0.93600 1.02155 1.01948 1.19533 0.95767 0.95105 0.92738 1.21975 1.01297 0.94924 1.02024 1.21898 1.01362 1.00239 0.96114 1.19937 0.97039 0.93993 0.95630 1.20891 1.00720 0.94299 0.97692 1.21360 0.96513 0.99889 0.93613 1.19080 0.98921 0.93892 0.95080 1.22320 0.93040 0.99744 0.90777 1.23027 1.01921 1.00643 0.95844 1.18267 0.79164 0.87156 0.83857 1.90809 1.57510 1.16746 1.76398 1.42862 1.48049 1.12102 1.25472 1.17162 1.11130 0.94336 0.87322 1.20439 0.98202 0.93033 0.98818 1.20974 1.03072 1.00072 0.93374 1.17675 0.88756 0.90308 0.92999 1.19568 1.24552 1.10225 0.94367 0.90331 1.25938 0.94060 0.97731 0.96634 1.69849 1.22249 1.26326 1.23121 0.86288 0.78126 0.80543 0.81698 1.19303 1.20290 1.18551 1.20534 1.10446 0.95038 0.97528 1.20036 1.02425 0.97887 0.92085 1.21442 0.99236 0.93913 0.97411 1.21107 0.98451 1.00313 0.94202 0.92417 0.92315 0.92365 0.92159 0.92343 0.92170 0.92359 0.92321 0.92397 0.85985 0.85493 0.84659 0.85708 0.77209 0.87986 0.86259 0.90817 0.88613 0.89174 0.85510 0.85434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 8.29 37.16 0.31 -0.47 16 2 C -0.03 -0.19 0.85 -155.66 -0.13 -0.33 16 3 C -0.15 -0.78 7.13 37.16 0.26 -0.52 16 4 C -0.14 -0.79 8.29 37.16 0.31 -0.48 16 5 C -0.07 -0.53 4.77 -104.50 -0.50 -1.03 16 6 C -0.12 -0.99 8.68 -39.65 -0.34 -1.34 16 7 C -0.10 -0.92 9.80 -39.11 -0.38 -1.30 16 8 C -0.07 -0.75 5.87 -105.05 -0.62 -1.37 16 9 C -0.04 -0.50 9.46 -37.14 -0.35 -0.85 16 10 C -0.19 -2.59 9.41 -37.52 -0.35 -2.94 16 11 C 0.53 9.66 7.46 -13.00 -0.10 9.56 16 12 O -0.54 -12.09 13.87 5.18 0.07 -12.02 16 13 N -0.64 -11.74 5.30 -11.02 -0.06 -11.80 16 14 C -0.01 -0.16 6.29 -83.62 -0.53 -0.69 16 15 C -0.08 -2.17 8.57 -39.78 -0.34 -2.51 16 16 C -0.16 -4.23 8.63 -39.26 -0.34 -4.57 16 17 C 0.11 2.86 5.57 -106.80 -0.59 2.27 16 18 C -0.46 -12.26 9.03 -37.86 -0.34 -12.60 16 19 H 0.08 2.01 7.90 -52.49 -0.41 1.60 16 20 C 0.07 1.89 5.14 -17.33 -0.09 1.80 16 21 N -0.79 -20.75 10.97 55.55 0.61 -20.14 16 22 Si 0.91 18.87 29.59 -169.99 -5.03 13.84 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 25 H -0.26 -5.34 7.11 56.52 0.40 -4.93 16 26 C -0.22 -5.29 9.74 -39.26 -0.38 -5.68 16 27 C -0.10 -2.33 9.89 -39.78 -0.39 -2.72 16 28 C -0.10 -0.97 9.41 -39.11 -0.37 -1.34 16 29 C -0.12 -1.03 8.95 -39.65 -0.36 -1.39 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.32 7.37 -51.93 -0.38 -0.06 16 33 H 0.06 0.33 7.50 -51.93 -0.39 -0.06 16 34 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.06 0.32 7.50 -51.93 -0.39 -0.07 16 36 H 0.06 0.32 7.37 -51.93 -0.38 -0.06 16 37 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.12 0.81 7.07 -52.49 -0.37 0.44 16 40 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.14 1.84 7.52 -52.49 -0.39 1.44 16 42 H 0.13 1.26 6.07 -52.49 -0.32 0.94 16 43 H 0.39 5.57 8.79 -40.82 -0.36 5.21 16 44 H 0.10 2.62 6.38 -52.49 -0.33 2.28 16 45 H 0.12 3.36 6.19 -52.49 -0.32 3.04 16 46 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 47 H 0.10 2.18 8.06 -52.48 -0.42 1.76 16 48 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 49 H 0.13 1.03 6.17 -52.49 -0.32 0.71 16 50 H 0.13 0.85 5.87 -52.48 -0.31 0.54 16 LS Contribution 407.19 15.07 6.14 6.14 Total: -1.00 -31.26 407.19 -11.11 -42.37 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -7.21 Total: 10.12 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: -5.63 Total: -28.50 kcal Atomic # 7 Polarization: -32.49 SS G_CDS: 0.55 Total: -31.94 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.07 Total: -12.02 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.26 -11.11 -42.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026083816.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.740 kcal (2) G-P(sol) polarization free energy of solvation -31.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds