Wall clock time and date at job start Tue Mar 31 2020 05:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47299 * 2 1 4 4 N 1.46899 * 109.47454 * 182.68205 * 3 2 1 5 5 C 1.46899 * 110.99994 * 199.91338 * 4 3 2 6 6 C 1.50708 * 109.46664 * 72.30398 * 5 4 3 7 7 O 1.21276 * 120.00209 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99548 * 179.97438 * 6 5 4 9 9 C 1.46496 * 119.99465 * 179.97438 * 8 6 5 10 10 C 1.50703 * 109.47093 * 180.02562 * 9 8 6 11 11 H 1.08004 * 119.99702 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00402 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99783 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00048 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47051 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47227 * 120.00126 * 14 12 10 17 17 H 1.48496 * 109.46914 * 239.99820 * 14 12 10 18 18 C 1.46897 * 110.99790 * 75.96217 * 4 3 2 19 19 C 1.53005 * 109.47103 * 201.62904 * 18 4 3 20 20 H 1.08996 * 109.70083 * 54.03657 * 19 18 4 21 21 C 1.53470 * 109.74176 * 174.64262 * 19 18 4 22 22 O 1.43173 * 108.23080 * 179.45749 * 21 19 18 23 23 C 1.36111 * 116.70059 * 313.76118 * 22 21 19 24 24 C 1.38697 * 119.39148 * 197.16742 * 23 22 21 25 25 C 1.38196 * 120.06653 * 180.20672 * 24 23 22 26 26 C 1.38256 * 120.11207 * 0.02562 * 25 24 23 27 27 C 1.38202 * 120.11088 * 359.60551 * 26 25 24 28 28 C 1.38706 * 120.06382 * 0.62631 * 27 26 25 29 29 O 1.36108 * 119.39318 * 179.80556 * 28 27 26 30 30 H 1.09005 * 109.46985 * 299.99959 * 1 2 3 31 31 H 1.08994 * 109.46927 * 60.00143 * 1 2 3 32 32 H 1.08998 * 109.46664 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47252 * 239.99744 * 2 1 3 34 34 H 1.09004 * 109.47405 * 119.99744 * 2 1 3 35 35 H 1.09004 * 109.46728 * 62.67888 * 3 2 1 36 36 H 1.09004 * 109.46703 * 302.68311 * 3 2 1 37 37 H 1.08996 * 109.46809 * 192.30036 * 5 4 3 38 38 H 1.08993 * 109.47168 * 312.30257 * 5 4 3 39 39 H 0.96997 * 120.00031 * 0.02562 * 8 6 5 40 40 H 1.08996 * 109.47359 * 299.99591 * 9 8 6 41 41 H 1.08993 * 109.47380 * 60.00278 * 9 8 6 42 42 H 0.97000 * 119.99600 * 179.97438 * 13 12 10 43 43 H 1.09004 * 109.47400 * 81.62556 * 18 4 3 44 44 H 1.08997 * 109.47367 * 321.62919 * 18 4 3 45 45 H 1.08998 * 109.70677 * 299.13777 * 21 19 18 46 46 H 1.08994 * 109.71697 * 59.72469 * 21 19 18 47 47 H 1.08001 * 119.97225 * 0.17579 * 24 23 22 48 48 H 1.07996 * 119.94817 * 179.97438 * 25 24 23 49 49 H 1.08001 * 119.94817 * 179.97438 * 26 25 24 50 50 H 1.07997 * 119.96534 * 180.29324 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5076 1.4431 -0.0648 5 6 4.0545 2.7253 0.3987 6 6 3.8971 2.8273 1.8940 7 8 3.3798 1.9214 2.5126 8 7 4.3312 3.9254 2.5439 9 6 4.1776 4.0248 3.9974 10 6 4.7388 5.3401 4.4730 11 1 5.1674 6.0325 3.7635 12 6 4.7061 5.6591 5.8139 13 7 4.1846 4.8158 6.6779 14 14 5.4024 7.2892 6.4035 15 1 5.9271 8.0521 5.2426 16 1 4.3311 8.0735 7.0686 17 1 6.5029 7.0374 7.3681 18 6 3.9747 1.1314 -1.4222 19 6 5.4137 0.6152 -1.3605 20 1 5.4742 -0.2220 -0.6651 21 6 5.8622 0.1620 -2.7565 22 8 7.2136 -0.3018 -2.6641 23 6 8.0836 0.4831 -1.9716 24 6 9.4480 0.2974 -2.1373 25 6 10.3438 1.0837 -1.4379 26 6 9.8827 2.0568 -0.5708 27 6 8.5244 2.2521 -0.4068 28 6 7.6200 1.4632 -1.1022 29 8 6.2853 1.6646 -0.9273 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.7164 1.9423 0.9131 36 1 1.6379 1.9700 -0.8650 37 1 5.1117 2.7841 0.1398 38 1 3.5171 3.5438 -0.0800 39 1 4.7446 4.6500 2.0491 40 1 3.1204 3.9667 4.2559 41 1 4.7144 3.2060 4.4763 42 1 4.1620 5.0401 7.6214 43 1 3.9377 2.0322 -2.0350 44 1 3.3330 0.3672 -1.8608 45 1 5.2191 -0.6462 -3.1048 46 1 5.8072 1.0005 -3.4506 47 1 9.8109 -0.4627 -2.8134 48 1 11.4058 0.9372 -1.5681 49 1 10.5851 2.6695 -0.0252 50 1 8.1668 3.0161 0.2676 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026664801.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:42 Heat of formation + Delta-G solvation = -81.911333 kcal Electronic energy + Delta-G solvation = -31223.143212 eV Core-core repulsion = 27023.025828 eV Total energy + Delta-G solvation = -4200.117384 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 348.188 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.46211 -39.22800 -38.00431 -37.49357 -36.82264 -34.05595 -33.48580 -32.28326 -31.86203 -30.77158 -29.21995 -28.25395 -26.67695 -26.49499 -24.26135 -23.17192 -22.76417 -21.95894 -20.86221 -20.74974 -19.56215 -18.92468 -17.68630 -17.08202 -17.03675 -16.09184 -15.80149 -15.57046 -15.28707 -15.11693 -15.01067 -14.79054 -14.71240 -14.38093 -14.16045 -13.97321 -13.94207 -13.64351 -13.35823 -12.99292 -12.68094 -12.37840 -12.23934 -12.21561 -11.99882 -11.87149 -11.77378 -11.58688 -11.35062 -11.29594 -11.16612 -10.94505 -10.89816 -10.85384 -10.54014 -10.37321 -10.27849 -9.34468 -8.94056 -8.77800 -8.70219 -8.27559 -8.19832 -7.79106 -6.14201 -4.20675 1.16654 1.18556 2.80716 2.99218 3.24640 3.31589 3.34640 3.47134 3.53164 3.60420 4.07924 4.28048 4.39890 4.51987 4.56518 4.62376 4.84736 4.88401 4.94042 5.01750 5.09826 5.14527 5.16149 5.21929 5.27711 5.33193 5.38035 5.39262 5.47366 5.61117 5.61983 5.71437 5.80569 5.82736 5.88075 6.02256 6.05549 6.10612 6.25773 6.34670 6.37626 6.49804 6.76012 6.94591 7.07395 7.30342 7.37286 7.52459 7.56988 7.72285 8.00832 8.70665 8.83999 9.21103 9.46491 10.96083 Molecular weight = 348.19amu Principal moments of inertia in cm(-1) A = 0.007569 B = 0.003312 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3698.605737 B = 8452.091884 C =11754.687926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C 0.058 3.942 4 N -0.515 5.515 5 C 0.028 3.972 6 C 0.500 3.500 7 O -0.539 6.539 8 N -0.717 5.717 9 C 0.252 3.748 10 C -0.541 4.541 11 H 0.063 0.937 12 C 0.063 3.937 13 N -0.886 5.886 14 Si 0.902 3.098 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.282 1.282 18 C 0.064 3.936 19 C 0.057 3.943 20 H 0.096 0.904 21 C 0.028 3.972 22 O -0.307 6.307 23 C 0.045 3.955 24 C -0.117 4.117 25 C -0.121 4.121 26 C -0.114 4.114 27 C -0.112 4.112 28 C 0.057 3.943 29 O -0.298 6.298 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.029 0.971 37 H 0.118 0.882 38 H 0.055 0.945 39 H 0.388 0.612 40 H 0.024 0.976 41 H 0.026 0.974 42 H 0.265 0.735 43 H 0.050 0.950 44 H 0.099 0.901 45 H 0.121 0.879 46 H 0.076 0.924 47 H 0.131 0.869 48 H 0.130 0.870 49 H 0.132 0.868 50 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.255 -8.535 -22.912 24.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.070 4.070 4 N -0.239 5.239 5 C -0.103 4.103 6 C 0.284 3.716 7 O -0.416 6.416 8 N -0.366 5.366 9 C 0.132 3.868 10 C -0.579 4.579 11 H 0.081 0.919 12 C -0.141 4.141 13 N -0.523 5.523 14 Si 0.730 3.270 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.065 4.065 19 C 0.000 4.000 20 H 0.114 0.886 21 C -0.048 4.048 22 O -0.222 6.222 23 C 0.000 4.000 24 C -0.135 4.135 25 C -0.139 4.139 26 C -0.132 4.132 27 C -0.131 4.131 28 C 0.012 3.988 29 O -0.213 6.213 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.047 0.953 37 H 0.136 0.864 38 H 0.073 0.927 39 H 0.220 0.780 40 H 0.042 0.958 41 H 0.044 0.956 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.117 0.883 45 H 0.139 0.861 46 H 0.094 0.906 47 H 0.149 0.851 48 H 0.147 0.853 49 H 0.150 0.850 50 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.929 -9.590 -21.928 24.254 hybrid contribution 0.133 1.840 -0.313 1.871 sum 4.062 -7.750 -22.241 23.900 Atomic orbital electron populations 1.21732 0.95899 1.01497 1.01730 1.21460 0.94987 0.96413 1.02420 1.22219 0.85770 0.97612 1.01361 1.61468 1.09415 1.31950 1.21044 1.22302 1.02958 0.90370 0.94628 1.20304 0.79471 0.82962 0.88893 1.90643 1.43869 1.38483 1.68648 1.46435 1.60337 1.18579 1.11267 1.19048 0.97296 0.97045 0.73445 1.21276 1.40920 1.02615 0.93133 0.91909 1.24952 0.95131 0.97451 0.96517 1.69989 1.44031 1.35590 1.02701 0.86380 0.78742 0.83082 0.78822 1.19638 1.20840 1.20800 1.22114 0.92176 1.01124 0.91041 1.23288 0.90077 0.91148 0.95499 0.88595 1.23602 0.82075 1.02108 0.97008 1.86294 1.19229 1.46146 1.70500 1.18918 0.90686 0.95109 0.95273 1.20404 0.89292 1.01707 1.02137 1.20899 0.99419 0.96192 0.97426 1.20963 0.94538 0.98699 0.99039 1.20579 0.91879 1.00886 0.99762 1.19006 0.84245 0.98328 0.97222 1.86317 1.12927 1.42369 1.79668 0.92402 0.93228 0.92735 0.92769 0.90611 0.89494 0.95282 0.86443 0.92672 0.77957 0.95765 0.95647 0.92556 0.93211 0.88260 0.86094 0.90625 0.85099 0.85252 0.85034 0.84477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 37.16 0.37 -1.15 16 2 C -0.11 -1.33 6.07 -26.73 -0.16 -1.49 16 3 C 0.06 0.75 4.46 -3.82 -0.02 0.74 16 4 N -0.52 -7.07 3.97 -236.07 -0.94 -8.01 16 5 C 0.03 0.43 5.24 -4.97 -0.03 0.40 16 6 C 0.50 10.18 7.37 -10.98 -0.08 10.10 16 7 O -0.54 -13.04 15.08 5.56 0.08 -12.96 16 8 N -0.72 -15.38 5.55 -61.47 -0.34 -15.72 16 9 C 0.25 6.78 5.43 -5.19 -0.03 6.76 16 10 C -0.54 -14.81 9.28 -34.44 -0.32 -15.13 16 11 H 0.06 1.61 7.60 -52.48 -0.40 1.21 16 12 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 13 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 14 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 15 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 18 C 0.06 0.63 4.67 -3.82 -0.02 0.62 16 19 C 0.06 0.62 3.24 -26.48 -0.09 0.53 16 20 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 21 C 0.03 0.24 6.56 37.40 0.25 0.49 16 22 O -0.31 -3.53 10.42 -32.88 -0.34 -3.87 16 23 C 0.04 0.55 6.49 -39.14 -0.25 0.30 16 24 C -0.12 -1.23 9.96 -39.43 -0.39 -1.62 16 25 C -0.12 -1.14 10.04 -39.59 -0.40 -1.54 16 26 C -0.11 -1.17 10.04 -39.59 -0.40 -1.57 16 27 C -0.11 -1.37 9.96 -39.42 -0.39 -1.76 16 28 C 0.06 0.74 6.49 -39.14 -0.25 0.49 16 29 O -0.30 -3.90 7.22 -32.87 -0.24 -4.14 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.52 6.72 -51.93 -0.35 0.17 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.09 1.42 6.45 -51.93 -0.33 1.09 16 36 H 0.03 0.32 8.00 -51.93 -0.42 -0.09 16 37 H 0.12 1.73 5.06 -51.93 -0.26 1.47 16 38 H 0.06 0.73 8.05 -51.93 -0.42 0.32 16 39 H 0.39 7.20 8.32 -40.82 -0.34 6.86 16 40 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.05 0.45 7.97 -51.93 -0.41 0.04 16 44 H 0.10 0.75 6.46 -51.93 -0.34 0.42 16 45 H 0.12 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 48 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 49 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 50 H 0.14 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 405.51 15.07 6.11 6.11 Total: -1.00 -33.89 405.51 -10.16 -44.05 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -7.90 Total: 6.34 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -2.31 Total: -2.18 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: -0.54 Total: -49.31 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.50 Total: -20.97 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.89 -10.16 -44.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026664801.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.863 kcal (2) G-P(sol) polarization free energy of solvation -33.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds