Wall clock time and date at job start Tue Mar 31 2020 06:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35533 * 125.68095 * 2 1 4 4 C 1.35441 * 108.87544 * 180.29094 * 3 2 1 5 5 S 1.76201 * 126.07128 * 179.71054 * 4 3 2 6 6 O 1.42100 * 106.40013 * 27.42200 * 5 4 3 7 7 O 1.42107 * 106.40246 * 160.34277 * 5 4 3 8 8 N 1.65598 * 107.21668 * 273.88595 * 5 4 3 9 9 C 1.38856 * 120.00140 * 63.13999 * 8 5 4 10 10 C 1.39566 * 119.84071 * 254.47557 * 9 8 5 11 11 C 1.36341 * 120.15358 * 179.72007 * 10 9 8 12 12 C 1.40877 * 119.84118 * 0.54815 * 11 10 9 13 13 C 1.41138 * 120.15711 * 179.69761 * 12 11 10 14 14 H 1.07998 * 120.00267 * 202.97457 * 13 12 11 15 15 C 1.39860 * 119.99965 * 22.97684 * 13 12 11 16 16 N 1.30911 * 120.00103 * 17.71524 * 15 13 12 17 17 Si 1.86799 * 120.00246 * 197.71728 * 15 13 12 18 18 H 1.48499 * 109.47108 * 89.99657 * 17 15 13 19 19 H 1.48502 * 109.47480 * 209.99635 * 17 15 13 20 20 H 1.48503 * 109.47210 * 330.00026 * 17 15 13 21 21 C 1.40892 * 119.68897 * 359.72600 * 12 11 10 22 22 C 1.36339 * 119.83287 * 359.97438 * 21 12 11 23 23 C 1.39842 * 107.86502 * 359.72866 * 4 3 2 24 24 C 1.37655 * 125.67650 * 179.83101 * 2 1 3 25 25 C 1.46670 * 126.23091 * 359.97438 * 24 2 1 26 26 N 1.34783 * 119.99647 * 183.75077 * 25 24 2 27 27 O 1.21697 * 120.00720 * 4.02325 * 25 24 2 28 28 H 1.09003 * 109.47119 * 266.55163 * 1 2 3 29 29 H 1.09001 * 109.47278 * 26.55446 * 1 2 3 30 30 H 1.08998 * 109.47257 * 146.55519 * 1 2 3 31 31 H 1.08004 * 125.55665 * 359.97438 * 3 2 1 32 32 H 0.97007 * 119.99731 * 243.14014 * 8 5 4 33 33 H 1.07996 * 119.92137 * 359.97438 * 10 9 8 34 34 H 1.08007 * 120.07742 * 180.27376 * 11 10 9 35 35 H 0.96999 * 119.99785 * 179.97438 * 16 15 13 36 36 H 1.07994 * 120.07738 * 179.97438 * 21 12 11 37 37 H 1.08004 * 119.91386 * 179.97438 * 22 21 12 38 38 H 1.08001 * 126.45537 * 179.97438 * 23 4 3 39 39 H 0.96995 * 119.99794 * 354.85242 * 26 25 24 40 40 H 0.97006 * 119.99625 * 174.84727 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5521 0.7093 -0.0065 5 16 4.9569 1.7728 -0.0163 6 8 4.5501 2.9809 0.6115 7 8 6.0543 0.9922 0.4376 8 7 5.2742 2.1511 -1.5970 9 6 4.3405 2.8584 -2.3425 10 6 3.5812 2.1992 -3.3105 11 6 2.6586 2.8863 -4.0422 12 6 2.4807 4.2672 -3.8274 13 6 1.5319 4.9863 -4.5855 14 1 1.6345 6.0546 -4.7060 15 6 0.4588 4.3154 -5.1807 16 7 0.1273 3.1171 -4.7707 17 14 -0.5017 5.1290 -6.5610 18 1 0.1166 4.7818 -7.8657 19 1 -1.9069 4.6494 -6.5359 20 1 -0.4782 6.6026 -6.3786 21 6 3.2547 4.9272 -2.8525 22 6 4.1693 4.2262 -2.1239 23 6 3.5779 -0.6889 -0.0045 24 6 2.2678 -1.1182 0.0033 25 6 1.8123 -2.5124 0.0079 26 7 2.7103 -3.5144 0.0872 27 8 0.6240 -2.7647 -0.0648 28 1 -0.3633 -0.0618 1.0258 29 1 -0.3634 0.9193 -0.4594 30 1 -0.3634 -0.8575 -0.5664 31 1 1.9081 2.1236 -0.0004 32 1 6.1125 1.8785 -2.0021 33 1 3.7221 1.1416 -3.4774 34 1 2.0686 2.3741 -4.7879 35 1 -0.6172 2.6520 -5.1833 36 1 3.1238 5.9856 -2.6829 37 1 4.7637 4.7308 -1.3766 38 1 4.4583 -1.3144 -0.0087 39 1 3.6598 -3.3175 0.0658 40 1 2.4069 -4.4324 0.1657 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000029972327.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:43 Heat of formation + Delta-G solvation = -46.390601 kcal Electronic energy + Delta-G solvation = -28443.532911 eV Core-core repulsion = 24350.616592 eV Total energy + Delta-G solvation = -4092.916319 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 349.093 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.46153 -38.91000 -38.01181 -36.60453 -35.31230 -34.79322 -34.21242 -32.85457 -32.74612 -29.63901 -29.42682 -28.77369 -26.72994 -24.79111 -23.35822 -21.50808 -21.16862 -20.81487 -19.87065 -18.90498 -18.23270 -17.47830 -17.06883 -16.86108 -16.56388 -15.92843 -15.68259 -15.44270 -15.29396 -14.52063 -14.37901 -14.16287 -14.04871 -13.69559 -13.47774 -12.87602 -12.65928 -12.47637 -12.38373 -12.32908 -12.12807 -11.68450 -11.62547 -11.49311 -11.35730 -11.26765 -10.92362 -10.86255 -10.78398 -10.27069 -9.97778 -9.95767 -9.81887 -9.33351 -9.16066 -8.89953 -8.43465 -7.68661 -7.42574 -6.96722 -4.52583 0.98255 1.37210 2.14896 2.55738 2.61299 2.96442 2.99875 3.01230 3.05830 3.20283 3.48013 3.74663 3.78156 4.27740 4.41767 4.60291 4.76403 4.98277 5.14443 5.22844 5.33590 5.47196 5.51570 5.62251 5.91875 6.19136 6.28556 6.38984 6.41210 6.60455 6.73810 6.85187 6.89936 7.04948 7.06667 7.12087 7.19346 7.37898 7.47416 7.88090 7.94960 8.02119 8.02585 8.13087 8.45990 8.69975 8.81330 9.94830 Molecular weight = 349.09amu Principal moments of inertia in cm(-1) A = 0.010062 B = 0.004138 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.167569 B = 6764.436856 C = 8801.324141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.399 5.399 3 C 0.164 3.836 4 C -0.743 4.743 5 S 2.705 3.295 6 O -0.963 6.963 7 O -0.985 6.985 8 N -1.033 6.033 9 C -0.033 4.033 10 C -0.082 4.082 11 C -0.170 4.170 12 C 0.117 3.883 13 C -0.447 4.447 14 H 0.082 0.918 15 C 0.075 3.925 16 N -0.783 5.783 17 Si 0.910 3.090 18 H -0.266 1.266 19 H -0.277 1.277 20 H -0.260 1.260 21 C -0.225 4.225 22 C -0.063 4.063 23 C -0.050 4.050 24 C -0.071 4.071 25 C 0.599 3.401 26 N -0.844 5.844 27 O -0.552 6.552 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.189 0.811 32 H 0.406 0.594 33 H 0.090 0.910 34 H 0.122 0.878 35 H 0.283 0.717 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.156 0.844 39 H 0.405 0.595 40 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.686 -8.915 5.675 10.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.070 5.070 3 C 0.020 3.980 4 C -0.835 4.835 5 S 2.797 3.203 6 O -0.953 6.953 7 O -0.975 6.975 8 N -0.787 5.787 9 C -0.129 4.129 10 C -0.103 4.103 11 C -0.190 4.190 12 C 0.114 3.886 13 C -0.476 4.476 14 H 0.100 0.900 15 C -0.144 4.144 16 N -0.407 5.407 17 Si 0.735 3.265 18 H -0.191 1.191 19 H -0.202 1.202 20 H -0.184 1.184 21 C -0.246 4.246 22 C -0.084 4.084 23 C -0.076 4.076 24 C -0.183 4.183 25 C 0.386 3.614 26 N -0.408 5.408 27 O -0.431 6.431 28 H 0.097 0.903 29 H 0.113 0.887 30 H 0.122 0.878 31 H 0.206 0.794 32 H 0.242 0.758 33 H 0.108 0.892 34 H 0.140 0.860 35 H 0.094 0.906 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.173 0.827 39 H 0.235 0.765 40 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 1.613 -8.883 6.468 11.106 hybrid contribution -0.455 -0.552 -1.152 1.356 sum 1.158 -9.435 5.316 10.892 Atomic orbital electron populations 1.22423 0.75316 1.06120 1.04154 1.44143 1.07365 1.04936 1.50521 1.21972 0.88575 0.92298 0.95157 1.31006 1.15442 1.08994 1.28060 1.01790 0.72527 0.73097 0.72875 1.93546 1.83541 1.44172 1.74011 1.93495 1.51731 1.72127 1.80153 1.52223 1.26166 1.69371 1.30942 1.16587 1.01259 0.90532 1.04544 1.20635 0.95884 0.97532 0.96276 1.21019 1.00073 0.95270 1.02664 1.17739 0.89992 0.92158 0.88693 1.19702 1.06008 0.96070 1.25788 0.89997 1.25985 0.97248 0.94620 0.96585 1.69848 1.23480 1.12398 1.34987 0.86262 0.78442 0.80703 0.81139 1.19101 1.20212 1.18405 1.20652 1.03739 0.98925 1.01276 1.20618 0.97377 0.92530 0.97882 1.20892 0.94842 0.92718 0.99169 1.20003 0.90439 0.87673 1.20154 1.16899 0.85421 0.83892 0.75157 1.43438 1.10278 1.09355 1.77719 1.90829 1.16323 1.84984 1.50970 0.90346 0.88681 0.87760 0.79401 0.75808 0.89198 0.86015 0.90620 0.88464 0.88189 0.82679 0.76546 0.76048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.77 10.53 59.85 0.63 1.40 16 2 N -0.40 -5.98 3.16 -120.24 -0.38 -6.36 16 3 C 0.16 2.62 11.15 -16.92 -0.19 2.44 16 4 C -0.74 -11.90 6.06 -39.98 -0.24 -12.14 16 5 S 2.71 45.97 5.85 -107.50 -0.63 45.34 16 6 O -0.96 -18.97 16.86 -57.17 -0.96 -19.93 16 7 O -0.98 -17.55 17.84 -57.17 -1.02 -18.57 16 8 N -1.03 -17.37 5.65 32.51 0.18 -17.18 16 9 C -0.03 -0.66 5.79 -83.69 -0.48 -1.15 16 10 C -0.08 -1.72 9.90 -39.77 -0.39 -2.12 16 11 C -0.17 -4.00 8.65 -39.27 -0.34 -4.34 16 12 C 0.12 2.85 5.59 -106.79 -0.60 2.25 16 13 C -0.45 -10.84 9.04 -37.88 -0.34 -11.18 16 14 H 0.08 1.91 7.90 -52.49 -0.41 1.50 16 15 C 0.07 1.72 5.15 -17.34 -0.09 1.63 16 16 N -0.78 -18.40 10.84 55.54 0.60 -17.80 16 17 Si 0.91 17.26 29.59 -169.99 -5.03 12.23 16 18 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 19 H -0.28 -5.17 7.11 56.52 0.40 -4.77 16 20 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 21 C -0.23 -5.12 9.74 -39.26 -0.38 -5.50 16 22 C -0.06 -1.34 9.20 -39.77 -0.37 -1.70 16 23 C -0.05 -0.70 10.11 -39.12 -0.40 -1.10 16 24 C -0.07 -1.03 6.89 -81.98 -0.56 -1.59 16 25 C 0.60 7.95 8.05 -12.85 -0.10 7.85 16 26 N -0.84 -7.19 8.86 30.26 0.27 -6.92 16 27 O -0.55 -8.85 15.56 5.19 0.08 -8.77 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.09 1.11 8.13 -51.93 -0.42 0.69 16 30 H 0.10 1.41 6.44 -51.93 -0.33 1.08 16 31 H 0.19 2.89 8.06 -52.48 -0.42 2.47 16 32 H 0.41 5.77 8.95 -34.47 -0.31 5.46 16 33 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 34 H 0.12 2.99 6.02 -52.48 -0.32 2.67 16 35 H 0.28 6.08 8.30 -40.82 -0.34 5.74 16 36 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 37 H 0.10 2.02 7.89 -52.48 -0.41 1.61 16 38 H 0.16 1.67 7.45 -52.49 -0.39 1.28 16 39 H 0.41 2.51 7.73 -40.82 -0.32 2.19 16 40 H 0.41 2.67 8.93 -40.82 -0.36 2.31 16 LS Contribution 361.46 15.07 5.45 5.45 Total: -1.00 -31.86 361.46 -9.41 -41.27 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: -4.11 Total: 16.51 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: -3.86 Total: -25.26 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: 0.67 Total: -48.27 kcal Atomic # 8 Polarization: -45.37 SS G_CDS: -1.90 Total: -47.27 kcal Atomic # 14 Polarization: 17.26 SS G_CDS: -5.03 Total: 12.23 kcal Atomic # 16 Polarization: 45.97 SS G_CDS: -0.63 Total: 45.34 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.86 -9.41 -41.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029972327.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.122 kcal (2) G-P(sol) polarization free energy of solvation -31.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds