Wall clock time and date at job start Tue Mar 31 2020 05:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99871 * 2 1 4 4 H 1.48503 * 109.47150 * 269.99919 * 3 2 1 5 5 H 1.48501 * 109.46988 * 29.99673 * 3 2 1 6 6 H 1.48493 * 109.47457 * 149.99996 * 3 2 1 7 7 C 1.37872 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00277 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00123 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.47457 * 179.97438 * 9 7 2 11 11 C 1.34770 * 119.99822 * 270.00654 * 10 9 7 12 12 O 1.21297 * 119.99583 * 184.73939 * 11 10 9 13 13 C 1.50701 * 120.00505 * 4.73018 * 11 10 9 14 14 N 1.46501 * 109.47164 * 180.02562 * 13 11 10 15 15 C 1.35041 * 126.39922 * 269.69061 * 14 13 11 16 16 N 1.30499 * 108.69749 * 179.86195 * 15 14 13 17 17 C 1.34125 * 109.25613 * 0.41141 * 16 15 14 18 18 N 1.48035 * 125.98677 * 179.72332 * 17 16 15 19 19 O 1.21803 * 119.99486 * 180.02562 * 18 17 16 20 20 O 1.21794 * 120.00399 * 0.02562 * 18 17 16 21 21 C 1.34667 * 108.01987 * 359.74641 * 17 16 15 22 22 C 1.40029 * 119.99749 * 90.00028 * 10 9 7 23 23 C 1.38849 * 120.04594 * 247.64464 * 22 10 9 24 24 C 1.38112 * 119.95571 * 179.72453 * 23 22 10 25 25 C 1.38469 * 120.04443 * 0.55038 * 24 23 22 26 26 F 1.35099 * 119.95758 * 179.70475 * 25 24 23 27 27 C 1.38476 * 120.09159 * 359.72205 * 25 24 23 28 28 C 1.38115 * 120.04287 * 0.02562 * 27 25 24 29 29 H 0.96995 * 120.00486 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.46944 * 60.00263 * 9 7 2 31 31 H 1.09004 * 109.47328 * 300.00227 * 9 7 2 32 32 H 1.08997 * 109.47578 * 300.00869 * 13 11 10 33 33 H 1.09008 * 109.46219 * 60.00893 * 13 11 10 34 34 H 1.07996 * 125.65070 * 359.97438 * 15 14 13 35 35 H 1.07998 * 126.58943 * 180.02562 * 21 17 16 36 36 H 1.08002 * 120.01859 * 359.97438 * 23 22 10 37 37 H 1.08005 * 119.97913 * 180.25059 * 24 23 22 38 38 H 1.08003 * 119.98106 * 179.97438 * 27 25 24 39 39 H 1.07998 * 120.02353 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 4.0000 -2.5752 0.0013 11 6 4.2250 -3.2092 1.1691 12 8 4.7102 -4.3209 1.1719 13 6 3.8740 -2.5370 2.4714 14 7 4.2128 -3.4250 3.5862 15 6 3.4010 -4.3415 4.1560 16 7 4.0535 -4.9399 5.1147 17 6 5.2896 -4.4257 5.1964 18 7 6.3382 -4.8305 6.1598 19 8 7.4282 -4.2875 6.1372 20 8 6.1110 -5.7065 6.9749 21 6 5.4094 -3.4764 4.2487 22 6 4.2329 -3.2366 -1.2108 23 6 3.4327 -4.3086 -1.5828 24 6 3.6605 -4.9559 -2.7813 25 6 4.6933 -4.5439 -3.6065 26 9 4.9183 -5.1822 -4.7757 27 6 5.4962 -3.4786 -3.2347 28 6 5.2684 -2.8252 -2.0394 29 1 -0.4850 0.8400 -0.0004 30 1 3.8752 -0.6796 0.8894 31 1 3.8746 -0.6807 -0.8905 32 1 4.4360 -1.6077 2.5637 33 1 2.8060 -2.3193 2.4915 34 1 2.3814 -4.5466 3.8651 35 1 6.2821 -2.8722 4.0495 36 1 2.6301 -4.6333 -0.9372 37 1 3.0357 -5.7872 -3.0730 38 1 6.3015 -3.1590 -3.8795 39 1 5.8950 -1.9947 -1.7496 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031804564.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:47 Heat of formation + Delta-G solvation = 28.264623 kcal Electronic energy + Delta-G solvation = -29667.760645 eV Core-core repulsion = 25109.587106 eV Total energy + Delta-G solvation = -4558.173539 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.107 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.85959 -43.02813 -41.66513 -40.41286 -38.34627 -36.45177 -35.63610 -34.52898 -32.94875 -31.15697 -30.78246 -30.27398 -28.66725 -27.71293 -26.08843 -23.49493 -23.02554 -22.65152 -21.82241 -21.73090 -19.88248 -18.87199 -18.43341 -17.87036 -17.62052 -17.52631 -17.39319 -16.89729 -16.42120 -16.27921 -15.54947 -15.21910 -15.16814 -14.66814 -14.57018 -14.37829 -14.29815 -13.68112 -13.54924 -13.32893 -13.04554 -12.65251 -12.47121 -12.45772 -12.11724 -11.60394 -11.54986 -11.35617 -11.14407 -11.07332 -11.03804 -10.80680 -10.68801 -10.65396 -10.04286 -9.81449 -9.37355 -9.10183 -9.07160 -8.99619 -8.14308 -6.56898 -4.64120 0.25411 1.08894 1.16245 1.26805 1.53683 2.18372 2.44275 2.55023 2.90441 2.95676 3.01643 3.12684 3.59236 3.93602 4.08044 4.27981 4.34699 4.38567 4.45424 4.61668 4.73118 4.77068 4.85530 5.01393 5.23797 5.39243 5.41738 5.46712 5.53077 5.87403 5.96872 6.09004 6.12476 6.19218 6.32597 6.43579 6.48280 6.61296 6.96719 7.00571 7.11860 7.36160 7.84360 7.91855 8.10433 8.44910 8.98820 10.54496 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.007850 B = 0.003697 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3565.849896 B = 7570.949681 C =10101.332163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.084 3.916 3 Si 0.869 3.131 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.558 4.558 8 H 0.082 0.918 9 C 0.204 3.796 10 N -0.544 5.544 11 C 0.507 3.493 12 O -0.534 6.534 13 C 0.083 3.917 14 N -0.428 5.428 15 C 0.243 3.757 16 N -0.453 5.453 17 C 0.038 3.962 18 N 0.070 4.930 19 O -0.169 6.169 20 O -0.139 6.139 21 C 0.074 3.926 22 C 0.156 3.844 23 C -0.071 4.071 24 C -0.142 4.142 25 C 0.088 3.912 26 F -0.143 7.143 27 C -0.145 4.145 28 C -0.095 4.095 29 H 0.271 0.729 30 H 0.039 0.961 31 H 0.040 0.960 32 H 0.133 0.867 33 H 0.157 0.843 34 H 0.231 0.769 35 H 0.203 0.797 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.336 -1.422 -0.726 7.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.122 4.122 3 Si 0.695 3.305 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.596 4.596 8 H 0.100 0.900 9 C 0.085 3.915 10 N -0.272 5.272 11 C 0.294 3.706 12 O -0.411 6.411 13 C -0.041 4.041 14 N -0.108 5.108 15 C -0.043 4.043 16 N -0.172 5.172 17 C -0.171 4.171 18 N 0.590 4.410 19 O -0.378 6.378 20 O -0.360 6.360 21 C -0.069 4.069 22 C 0.066 3.934 23 C -0.090 4.090 24 C -0.162 4.162 25 C 0.069 3.931 26 F -0.122 7.122 27 C -0.164 4.164 28 C -0.114 4.114 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.150 0.850 33 H 0.175 0.825 34 H 0.247 0.753 35 H 0.219 0.781 36 H 0.151 0.849 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.613 -2.198 -0.802 7.015 hybrid contribution 0.654 1.508 -0.720 1.794 sum 7.267 -0.690 -1.522 7.457 Atomic orbital electron populations 1.69852 1.06249 1.27804 1.47465 1.24842 0.94740 0.98926 0.93693 0.86968 0.80225 0.83935 0.79339 1.19573 1.20502 1.18902 1.21218 0.88237 0.95380 1.54793 0.89975 1.20116 0.96770 0.76106 0.98523 1.45501 1.63260 1.16053 1.02355 1.20369 0.78776 0.86169 0.85309 1.90791 1.43768 1.19421 1.87132 1.22179 1.07616 0.92242 0.82097 1.45415 1.10576 1.29532 1.25230 1.25293 0.99021 0.88663 0.91299 1.69750 1.02453 1.25482 1.19493 1.20498 0.92132 1.04613 0.99877 1.42236 1.00168 0.99122 0.99427 1.94543 1.09122 1.56616 1.77537 1.94564 1.86512 1.23289 1.31591 1.22277 0.91379 1.00021 0.93250 1.17486 0.94594 0.94105 0.87261 1.21094 0.97893 0.94740 0.95303 1.20983 0.98338 1.02065 0.94796 1.17668 0.97859 0.94353 0.83206 1.91477 1.94253 1.80879 1.45588 1.20907 1.01068 0.96403 0.98038 1.21017 0.96288 1.00233 0.93871 0.91834 0.94364 0.94152 0.84967 0.82516 0.75293 0.78051 0.84894 0.84551 0.84576 0.84886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.15 13.96 55.43 0.77 -21.37 16 2 C 0.08 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.87 16.62 27.47 -169.99 -4.67 11.95 16 4 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.26 -4.52 6.54 56.52 0.37 -4.15 16 7 C -0.56 -11.79 9.71 -34.44 -0.33 -12.13 16 8 H 0.08 1.96 8.06 -52.49 -0.42 1.54 16 9 C 0.20 3.43 3.95 -5.19 -0.02 3.41 16 10 N -0.54 -8.51 2.51 -114.71 -0.29 -8.80 16 11 C 0.51 7.50 7.59 -10.99 -0.08 7.41 16 12 O -0.53 -9.44 16.18 5.54 0.09 -9.35 16 13 C 0.08 0.93 5.29 -5.19 -0.03 0.91 16 14 N -0.43 -5.07 2.24 -119.87 -0.27 -5.34 16 15 C 0.24 2.98 12.56 -90.38 -1.14 1.84 16 16 N -0.45 -6.93 11.23 -11.69 -0.13 -7.06 16 17 C 0.04 0.58 8.02 -145.53 -1.17 -0.59 16 18 N 0.07 1.14 4.45 32.62 0.15 1.28 16 19 O -0.17 -2.63 19.02 -29.46 -0.56 -3.19 16 20 O -0.14 -2.41 19.24 -29.46 -0.57 -2.98 16 21 C 0.07 0.91 11.25 -16.56 -0.19 0.72 16 22 C 0.16 2.46 4.76 -83.66 -0.40 2.06 16 23 C -0.07 -1.09 9.53 -39.40 -0.38 -1.46 16 24 C -0.14 -1.96 10.02 -39.54 -0.40 -2.36 16 25 C 0.09 1.21 7.30 -39.41 -0.29 0.92 16 26 F -0.14 -1.94 17.26 2.25 0.04 -1.90 16 27 C -0.14 -1.84 10.02 -39.54 -0.40 -2.23 16 28 C -0.09 -1.29 9.69 -39.40 -0.38 -1.67 16 29 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 30 H 0.04 0.57 5.53 -51.93 -0.29 0.28 16 31 H 0.04 0.69 7.29 -51.93 -0.38 0.31 16 32 H 0.13 1.16 7.26 -51.93 -0.38 0.78 16 33 H 0.16 1.71 7.91 -51.92 -0.41 1.29 16 34 H 0.23 1.98 8.06 -52.49 -0.42 1.56 16 35 H 0.20 1.84 8.06 -52.49 -0.42 1.42 16 36 H 0.13 2.05 8.06 -52.49 -0.42 1.62 16 37 H 0.14 1.58 8.06 -52.48 -0.42 1.16 16 38 H 0.14 1.37 8.06 -52.48 -0.42 0.95 16 39 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 362.19 15.07 5.46 5.46 Total: -1.00 -29.78 362.19 -8.85 -38.62 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -3.58 Total: 4.03 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -5.29 Total: -1.36 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: 0.23 Total: -41.29 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -1.04 Total: -15.52 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 16.62 SS G_CDS: -4.67 Total: 11.95 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.78 -8.85 -38.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031804564.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.890 kcal (2) G-P(sol) polarization free energy of solvation -29.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds